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Query: gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCDLRKTKLIDKISSLELYKYSIFFRNYIENVAEDCLKNGLILESAAHNVSEVELARLKVQLKNALLNCIISYRFHGIGYVLVKTKDTLIDLEQPVNIELPIGFEYLDYEYVRDLGVDFDHITYKVKSNNKNNSLDAVKIHKSRLIIYENFDYILKRYVPCYTESFLLDIYLFEKIYVEIERRIENHNFLFYKDESLVQLQDALSSATTSLSALTQSNNDRGSGILSSFLRKQNSNNHSKDISNLRNLNDSLSQELARLKSNLNNEGMFYTATPSASLEVIKYDLSYLKEALALIKAKIGADTKEPLTRSFNEQAKGLGNDGKGDRSNYYDFLKGVQEQVENSCNLKLTKYFGLDMKFNSLIMLSEEQKVERDIKLIELYSKYNQLIQSSSFNNEELAMLKEKLFSFLast
1 -84.900PF06381.9; Q11J16_CHESB/39-389; Protein of unknown function (DUF1073 topsan)  ali follow..  14  1............QQLVAAYRTSWLPRKIIDIPALDSCRAWRAWQAKNPQIEKLEAEETRLGVQGKVLEVRKKARLFGGAAIYFDLGDDASQ-VEKVKAGGIRFLTVLTPRQLDPLSPLYGRPKDYTVVSGT---TARVKIHPSRLAIFIGNELPDRDIT---------------------------------SSASYAWGDSVLTSVLEAVKQADSTSANIASLIFEANVDVVTMEGLMAYVGT-PDGERKVTDRYRIAATGKSINRMLIL-DGKEKYERKSASFTNLHELMDRFFQNVSGAADIPMTRLFGMSPGGLNSTGEADLRNYYDRIASGQTLEMQPALANLDECLDIHYVWNPLWQMSEKEKAEIFKAKSDAART......................... 351
2 -12.300PF07230.9; PORTL_BPT4/6-508; Bacteriophage T4-like capsid assembly protein (Gp20)  ali follow..  66..........TTRELIDTYRNNYEVDNAVSEIVSDAIVY-VALNLDKSKFSPKIKNMMLLSFQRKGSDHFRRWYVDSRIFFHKIIDPKR-------PKEGIKELRRLDPRQVQYVR--------------------EIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAAVVYAHSGLVDCCGKNIIGYLHRAVKPANQLKLLEDAIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGKI--GKAVTEVDTLPDNTGNMEDI-RWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITTFAKFIRELQHKFEEVFLDPLKTNLNIKIEFHRDSYFAELKEAEILERRINMLTMAEPFIGK--MTDEEIEQEAKQ.... 499
3 -9.790PF05133.12; F3YBH0_MELPT/30-501; Phage portal protein, SPP1 Gp6-like  ali follow..  48.......................LTKTAARRLASIIFNEKCEVVLDVAEEQSIDKETLA-NFFNLLELNLEKGIALGGFAMRPYIDAKGKIKISWIRADQFYPLQS--AIATKKTITIGNKQYYYTLLEFHEWENNAYIIE-NELYKSESPETVGKRVPLAEIYDDLADTVKLTGLQRPLFTYFRTPGANNKSLES---GMGIVDNSREILDQINLTHDQFSWEIQMGQRRVIVPAEWLRVNENDPARPMLFDTAQNVLMGMYGD------SSQTIGIKDVTTAIDAIDHWIKEFEVQIGMSTGS-----MSYADDGLKTATESDNSMTYQTRSSYLT-MLEKALDELIHAIQVSVHFNDGLFVDKNKQLDEKVSLAGMMPKKEFLKRNFGLSDESAEEWLTA.... 465
4 -8.520PF04860.10; Q8XYS6_RALSO/46-375; Phage portal protein  ali follow..  132.......................................................................................................................................................................................................GISPIRQHAETIGLGLSVQRYGKEFFDGGGRP-------TGLLTVKGDLQDKSWERLKAVARLKQSDNKTLLLPADLDYKSISIAPEDAQETRKFNRSEIASLYNVP-GHMINDLERATFSNISEQGVGFVRYVMNWEQEINRKVFTPAERRAGYYVKLNALLRGTPKERAE----------FYHYGITDGWLDRNEVRALED..... 330
5 -8.480PF05136.11; A9C2C6_DELAS/51-407; Phage portal protein, lambda family  ali follow..  27...........RDRSSDSARNDWSSESIIQKWTTTLVGIAITPRFRRIKDKERRQEINDLDAYGMQTLAVRSWIERGEMFGRRRYRKTSDGLAVPMQ------VQLLEADMVPNFDADTYSGL-----PVNNKIRSGIEFDNR------GKKIAYWVYKEHPGDGVWSGAGGTPAATALVVPAEDMFHMFEPKRIGARRGVPTLAPILAKQRNILDYEDAERQKIANLFVAFISRSLPSLDPTHQALTGLESEIDGEAAPLLPMKPGLMQELEDGQTVEFAKPP-TSYSDYMRTSHLGTTAGTGVPYELAVGDIANVSDRTLRVVINEYRRFASQRQ...................................................................... 357
6 -6.560PF17111.3; G2X365_VERDV/2-211; Fungal N-terminal domain of STAND proteins  ali follow..  16  5.......................................................................................................................................................................................................................SIASGVVALITFAFQSSTALYTTVRSFQSQDKTARALKTELTDLTAVLESLLETVSANPDINFEALKLPLYRCGKTCEEYGDLIARCTKHSSTPRPSFRDWIGQQYLKGDISDFKEMLAGYKST-----INIALANVNLRVVASITPNALEEYKDLIRDITSDLQEHMQRL..................... 170
7 -5.820PF06558.10; SECM_KLEP7/24-163; Secretion monitor precursor protein (SecM)  ali follow..  1.........................................................................................................................................................................................................................................................................................................MVAASLGLPALSNGHETAAPAKATASNHNPSKVNFVDYWHQHAIRTVIRHL------SFAMAPQALPVAEETSPLQAQHLALLDTLSALLTQDSTPPVVIRQA....... 112
8 -5.320PF11568.6; T1I764_RHOPR/63-202; Mediator complex subunit 29  ali follow..  10  1...................................................................................................................................................................................................................................................................................EKLD----NISKVKTLVGPLRDSLAATLKTAARTLHQNSLVDIGSLKNADMEEFYSICDQI-ELHLKTSIECLNQGAS-SQRYLNMTVTPQRSEPVPGQQEMNTLTQYLATVRTQVSFAKELHDMLLA.... 133
9 -5.300PF15975.3; YQIK_ECOLI/406-530; Flotillin  ali follow..  2..................................................................................................................................................................................................................................................AEMQAAAIVELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLQALPAVIEKSVEPMKSIDGIKIIQVDGLNRGGAAGDANTGNVGGGNLAEQALSAALSPLIDSLLNEIGV..................................................... 125
10 -5.270PF11492.6; Q7T7T5_HARNA/2003-2059; Cricket paralysis virus, VP4  ali follow..  12  1..................................................................................................................................................................................................................................................................................GDEYETAKTSPLSISGTLTTVANVAAAASSLPHIGAFSKATEIVARAGASAAKLF.............................................................................. 55

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.