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11497090
Query: gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCDLRKTKLIDKISSLELYKYSIFFRNYIENVAEDCLKNGLILESAAHNVSEVELARLKVQLKNALLNCIISYRFHGIGYVLVKTKDTLIDLEQPVNIELPIGFEYLDYEYVRDLGVDFDHITYKVKSNNKNNSLDAVKIHKSRLIIYENFDYILKRYVPCYTESFLLDIYLFEKIYVEIERRIENHNFLFYKDESLVQLQDALSSATTSLSALTQSNNDRGSGILSSFLRKQNSNNHSKDISNLRNLNDSLSQELARLKSNLNNEGMFYTATPSASLEVIKYDLSYLKEALALIKAKIGADTKEPLTRSFNEQAKGLGNDGKGDRSNYYDFLKGVQEQVENSCNLKLTKYFGLDMKFNSLIMLSEEQKVERDIKLIELYSKYNQLIQSSSFNNEELAMLKEKLFSFLast
1 -73.900PF06381.6; Q11J16_MESSB/35-393; Protein of unknown function (DUF1073 topsan)  ali follow..  14  1........TVDLQQLVAAYRTSWLPRKIIDIPALDSCRAWRAWQAKNPQIEKLEAEETRLGVQGKVLEVRKKARLFGGAAIYFDLGDDASQP-EKVKAGGIRFLTVLTPRQLQPLSPLYGRPKDYTV---VSGTTARVKIHPSRLAIFIGNELPDRD--------------------------ITSSASYAWGDSVLTSVLEAVKQADSTSANIASL-------IFEANVDVVTMEGLMAYVGT-PDGERKVTDRYRIAATGKSINRMLILD-GKEKYERKSASFTNLHELMDRFFQNVSGAADIPMTRLFGMSPGGLNSTGEADLRNYYDRIASGQTLEMQPALANLDECLDIHYVWNPLWQMSEKEKAEIFKAKSDAARTIAG...................... 358
2 -11.800PF04860.7; Q3YIY9_HAEPR/28-375; Phage portal protein  ali follow..  16....................ALPAVLNAVNVIAQAVASMPCYLFEITGDGRKRIENHSVEYLYQLKEVMMRHLLLNGNAYAVIGWNSK----------GQPETLTPYPPYSVNVQRTLKGDYLYQITDL----NGKVKNYFQDEILHLRH------------------------------------SNDGFMGRSPITVCREAVGLGLAQQRHGSAVMKNGLMA-------------VTTSEWLDQTKGQKALEALKRYQGAKNAGKTPLLEG-GMDYKQLGMSNQDAEGSRKFTIEDIARIFNISPIFLQDYSHSSYANFSEASRAFLGQTLRPHLVNFEQQLKDALMKRYVIEFDTSDLLRTNQQERFAS----------YDTAIKCGILSPNEARKRE...... 347
3 -10.800PF05133.9; Q0R582_9CAUD/19-509; Phage portal protein, SPP1 Gp6-like  ali follow..  57.......................IARTASKKIASLVYNEQSTITTKNEILQKLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDGDKVRVAIKSEGRKNVYYTLVEFHEWVTADGQE-----TGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVI-----------VPEHLTQRQYQRPDGTIDFRPRFDVEQNVYMQIGGSSMDAITDLTSPINDYILAISEGLKLFEMQIGVSSGMFTFDGQGMKTATEVSENSDTYQMRSSIVA-LVEQSIKELCVSMDISVNLDDGVFTDRHAELDYWAKAAGFSTKKRAIGKTLNISGVEAEKELNA.... 474
4 -9.960PF07230.6; A1XGY4_9CAUD/1-507; Bacteriophage T4-like capsid assembly protein (Gp20)  ali follow..  62..........EKQELIRNYRESPEVDEALTEIRNEVFIF-LDFTEESELPQSIKNKILDLNFDHRGIQYFDDWYVDGCIYLEKRVIKGK-------EKQGVHSVSEIDPTRIRKVRLLPKPDPITGEFDVNA--IQEFYLYSNFDPKMFPMNQTIQVNYGSPLVGRRIHKDAITYVHSGLFDRNLG-----QYVSFLKKAIIPFNNLKMMEDAMVRVVRAPQRRAFYVDVSGMQKNKADAYMKG-DSTKGTLSNRRAIQTMLEDYWLPRRDGGKGTEVQTIDNAQDIMDEI-EYLRDKLWRALGIPRSRF-GDQPSTFVFGKGIEIQRFTKFLHLLRS-RFILVIEDLLRT-SLDWQYTEDNAFVEFKESEIINNRLDSLARIQPYVGT--MTDEEIKLEQEK.... 503
5 -8.860PF05136.8; Q8ZMZ5_SALTY/26-396; Phage portal protein, lambda family  ali follow..  30............ARADDLVRNNGIAANAVALHKDHIVGHLFLISYRPNWRYLGMRESAAKSFVDEVEAAGVGVHAFNGEIFLQPVWDAETTQVFRTR------FKAVSPKRVTPGYARGNRQLRAGVETDRNGKALAYHVCDDD---------AGGERWTRIPRFLPSGRPAMLHIFEPVEDGQTR------GANQFYSVMERLKMLDTLQA--TQLQSAIVKAMYAATIESELDSEKAFEYITAADNKDTPLVNMLANYARYYSTNSIKLGGPGDELNLQTAQ-NGFSALEQALLRYIAAGLGVSYEQLSRDYSQVSYSSARASANESWRYFLGRRR..................................................................... 371
6 -6.450PF04344.8; Q5E3R9_VIBF1/34-238; Chemotaxis phosphatase, CheZ  ali follow..  6..................................................................................................................................................................................................KEIGSLTRDLHESLKNFKLDHRVVAIANDEIPDA------RDRLQYVIDKTEMAANKTMDAVDRSLPIADELHEGLVRPQWNSLMKGRIELAQFKTLCHNIDGLLTQVEGN-SSELRNELTTILMAQDFQD-------LTGQIIKRVITLVQEVEDRLVDILTLFKVEERLDAADQSKKPAVAEGPIINPHEREDAVASQDDVDDLLASLGF. 205
7 -6.190PF11568.3; MED29_BOMMO/51-192; Mediator complex subunit 29  ali follow..  1...............................................................................................................................................................................................................................................................................QDKMDNISKVKSLMGSLRESIPMTLKSAAQILHQNHNADSNTQKGMDNPVPRFELEEFFSICDQM-ELHLRTATTCIQQAQS-AAHYLPL-IASRLDSGPTTQETTLSYPQYLKTVGLQISYAKDIHDTL...... 131
8 -5.950PF06558.7; C4X3N6_KLEPN/1-142; Secretion monitor precursor protein (SecM)  ali follow..  1.........................................................................................................................................................................................................................................................................................................MVAASLGLPALS---AAPAKATASNHNPSKVNFSQLALLETNR-QHAIRTVIR--HLSFAMAPQALPVAEETSPLQAQHLALLDTLSALLTQDSTPPVVIRQA....... 112
9 -5.860PF06074.7; VG29_HAEIN/1-518; Protein of unknown function (DUF935 topsan)  ali follow..  66..............AEDMEEKDTHILSELSKRRGAITAVDWQIKPPRNATPEEQRDAEMLQ--DDCIFDATDAILKGFSSQEIE------------EQGLVGGLKLIKNVHWRDPAWFMTPAYQRNSLRLRDGTPEGAEMQQFGWVKHVARA----------KTGYLSRIGLVRTLVKNYSVRDFAEFLEIYGLPLRLGKYPE---------------------------------------GATDKEKQTLLRAVMSIGH-----NAGGIIPRGMELEFEKAADGSFMAMIEWAEKSASKAILGGTLTSQADGATSTNALGNVHNDVRLEIRNADLKRLAATLTRDLVYPL-YALNCKPRFEFDVAESEDLN----AFADGLNKLVDIGFIPKQWAHDKL...... 406
10 -5.490PF04494.10; Q758K7_ASHGO/135-272; WD40 associated region in TFIID subunit  ali follow..  11  1.............................................................................................................................................................................................................................................................................LVQQAQVTPQHYFRAYAMLKNWVDSSLDMYKPELSRIIYPIFIYVFLTLVSKAPVQARRFFDKYSEDYKALHGTEINKLFSVNS-HIKENELAQGFQSNKYRVTISRTTLNLLLYFLNENESVGGSLLISIINQ.... 135

FFAS is supported by the NIH grant R01-GM087218-01
6 0 2 4 4   jobs submitted since Jan 1, 2011
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Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.