current user: public




11497070
Query: gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290
# Score Template Links and tools%idFirst MSIVFDSDFGILKRTIKDIVRAKREYLRVNYGINIDDNQSSIYNIIASSLALIEEEIINELNLFFSKMKPGGTYWAAIEEHISSKSTTYSAVRNALLNLDGIEYTNIKSAAGKANIYLILKETLLDTSKSNINSPEFKAKLWETLYLTTPSGTLLEGDIEIDGLNSTGQRKSYKISLGKRKYVYMKVKYKLDLKNYLYLNIDSQIRDIYSRIISNNYSDMGISFEYQDFFAPVNEVKGIKFMEISACIKDTDTESITKIGDSDFKKNQDIAINDDTMLLFNMTDRLLIDIGLast
1 -134.000PF03434.8; Q0SLC5_BORAP/1-291; DUF276 topsan  ali follow..  90  1MSIVFDSDFGILKRTIRDIVRTKREYLRVNYGINIDDSNSSIYNIIASSLALIEEEIINELNLFFSKMKPGGSYWAAIEEHISSKSTTYSAVRNALLNLNGIEHANIKSSAGKANIYLILKEDLLDTNKTNINNPEFKAKFWETLYLTTPSGTLLEGDIEIDGLNSTGQLKSYKISLGKRKYVYMKVKYKLDLKNYLYLNIDSQIRNIYSRIISNNYFDMGISFEYQDFFAPVNEVKGIKFMEIKICVKDTDTESISKISDSDFQTNQDISINDDTMLLFNTTERLLIDID 291
2 -6.600PF00508.12; Q4JHA5_HPV38/1-202; E2 (early) protein, N terminal  ali follow..  13  2...........................................ETLSARFTVLQEKLMDIYESGVEDLDTQIQHWQLLRQE---QIIYHYARRHGVLGYQPVPSLASSEAKAKDAISMVLLLESLKKSKYADEQWTLAQTSLE-AVRSPPADCFKKGPKNIEVVFDGDPENLMSYTVWTYIYYWEKVEGHVDYTGAYYYEGNLKVYYLKFENDAKRFGVTGVHVNKDTVFTPVT......................................................... 199
3 -5.990PF08873.6; Q7WDF5_BORBR/9-217; Domain of unknown function (DUF1834 topsan)  ali follow..  12  1................................................PYTRIEAAICGRLKAGLSMVRGVASYGGELDDDLGQIVRVLPAAWVTFGGITGTRPYSTSKETGRFAVMAGQLNARSEEAMRRGGHRPQEIGTNPLVLLIQQDLTDQDGRLEISALRPGRVRTLFNTQLRGEAVSVFACEFETDW.................................................................................................. 155
4 -5.060PF00823.14; A5TZH9_MYCTA/2-160; PPE family  ali follow..  13  18.................................................................GPVLAAATGWSSLGREYAAVAEELGALLAAVQA-GVWQGPSAESFAAACLPYLSWLTQASADCAAAAARLEAVTAAYAAALVAMPTLAELAANGAMVATNFFGI-NTIPIAVNEADYVRMWLQAATTMATY............................................................................................... 150
5 -5.050PF12112.3; B2SY61_BURPP/2-100; Protein of unknown function (DUF3579 topsan)  ali follow..  10  27..........................................................................................................................................................................................................ERLAGVMACFGPGARKGPNAYMQYSLYVRPT-MIGDLKCVILDSRLRDIEPMAFDFV--LNFAKDNDLVVTEACEL............. 99
6 -5.010PF03935.10; Q6FUB1_CANGA/183-684; Beta-glucan synthesis-associated protein (SKN1)  ali follow..  9.....EDDDYLHNPDPEEEARLDRKRFSNDFKYMDKRSAGGLAGVLFLFIGLGCLFILLPALTYTGVTEHAKPVVQEILS--AYQYPQLSAIRTKLVDPDTPQSALSRQARDGSYWKLVFSDEF---NAEGRTFYDGEDQFWTAPWYSPDASTTRNGTLQLRMDAFKNHNLYYRSGMSWNKLCFTQGAIEVSAN................................................................................................. 205
7 -4.790PF00605.12; Q6TGZ1_DANRE/10-117; Interferon regulatory factor transcription factor  ali follow..  10  18...............................GLVWDNPEKTMFRIPWKHAGKQDFRSEEDAAIFKAWAAFKGKLMENGNSDPASWKTRLRCALNKSPEFSEVTERSQLDISEPYKVYRLVP.......................................................................................................................................................................... 107
8 -4.770PF01715.12; MIAA_HAEIN/37-292; IPP transferase  ali follow..  15  3..IYKGMDIGTAKPSKEELALAPHRLI----DILDPSESYSAMNFRDDALREMAD--ITAQGKIPLLVGGTMLYYKALIEGLSPLPSADENIRAEL--------EQKAAQQGWAALHTELAK--IDPISAARINPSDSQRINRALEVFYITGKSLTELTEEKGEALPYDFVQFAIAPQDRHVLHERIEQRFHK--MIELGFQAEVEKLYARGDLNINLPSIRCVGYRQMW---EYLQGDYAYEEMIFRGICATRQLAKRQLTWLRGWKT...................... 248
9 -4.740PF12007.3; B2JPP5_BURP8/1-193; Protein of unknown function (DUF3501 topsan)  ali follow..  18  14....YAKARKTMREQIIEHKKRRIVRLGNHLTFLFEDELTIRYQILHIEKIFDEEGIQGELEAYLPLVPDGSNLKATMQIEYENEVER----RAALARLIGVEDSVFVKVDGEEPSYAIADEDLERENNEKTSAVHF.......................................................................................................................................................... 145
10 -4.620PF01975.12; SURE_PSEA6/1-185; Survival protein SurE  ali follow..  15  1MRILLSNDDGVFAQGLAELYKELKEDLSLQQPLRMEQMQSGFYAVNGTPSDCVHVGVNSFLQQDPELVISGINHGANLGDDVIYSGTVAAATEGRYMGLPAIAVS.......................................................................................................................................................................................... 123

FFAS is supported by the NIH grant R01-GM087218-01
6 0 4 5 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.