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Query: gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSIVFDSDFGILKRTIKDIVRAKREYLRVNYGINIDDNQSSIYNIIASSLALIEEEIINELNLFFSKMKPGGTYWAAIEEHISSKSTTYSAVRNALLNLDGIEYTNIKSAAGKANIYLILKETLLDTSKSNINSPEFKAKLWETLYLTTPSGTLLEGDIEIDGLNSTGQRKSYKISLGKRKYVYMKVKYKLDLKNYLYLNIDSQIRDIYSRIISNNYSDMGISFEYQDFFAPVNEVKGIKFMEISACIKDTDTESITKIGDSDFKKNQDIAINDDTMLLFNMTDRLLIDIGLast
1 -128.000PF03434.11; Q9R331_BORBU/1-290; DUF276 topsan  ali follow..  100  1MSIVFDSDFGILKRTIKDIVRAKREYLRVNYGINIDDNQSSIYNIIASSLALIEEEIINELNLFFSKMKPGGTYWAAIEEHISSKSTTYSAVRNALLNLDGIEYTNIKSAAGKANIYLILKETLLDTSKSNINSPEFKAKLWETLYLTTPSGTLLEGDIEIDGLNSTGQRKSYKISLGKRKYVYMKVKYKLDLKNYLYLNIDSQIRDIYSRIISNNYSDMGISFEYQDFFAPVNEVKGIKFMEISACIKDTDTESITKIGDSDFKKNQDIAINDDTMLLFNMTDRLLIDI. 290
2 -6.140PF00508.15; VE2_HPV1A/1-200; E2 (early) protein, N terminal  ali follow..  16  4.............................................LSSRLDLLQEQLMNLYEQDSKLIEDQIKQWNLIRQE---QVLFHFARKNGVIGLQAVPSLASSQEKAKTAIEMVL---------ESLKDSPYGTEDWSLLFLAPPAGTFKKSGSTLEVTYDNNPDNQTRHTIWNHVYVWRKVSSGVDAVGVYYLEHDGY-KNYYVLFAEEKYSTTGVNYRGKRFTNVMS......................................................... 200
3 -5.860PF01349.15; POLG_YEFV1/2257-2500; Flavivirus non-structural protein NS4B  ali follow..  11  1......NELGMLEKTKEDLFGKKNLIPSSASPPDLDLKPGAAWTVYVGIVTMLSPMLHHWINLSLSGIAQSASVLSFMDKGIPFMKMNISVIMLLVSGWNSITVMPLLCGIGCAMLHWSLILPGIKAQQSK--------LAQRRVFHGVAENPVVDGNPTVDIEEAPEMPALYEKKLALYLLLALSL........................................................................................................ 181
4 -5.230PF14198.4; D4LQH4_9FIRM/4-113; Transposon-encoded protein TnpV  ali follow..  14  5...........................................................................................................................................................VNGYLIPNLTYKSGEQMEQLGKGFLRRDYLKNHRNSTYQVMLLLEVDKAAREREEVILEQLEEKEPLPDKEKDQMAWVRAANQHRAIAEEIILKE......................................... 108
5 -4.990PF08028.9; O05773_MYCTU/223-355; Acyl-CoA dehydrogenase, C-terminal domain  ali follow..  12  8........LGNARAAIDDLVELAGGKKGLGSTRTLAERSATQAAAAESALGAARALFYEVIEAAWQVSHDAEAV--PVTMRNRLRLAATHAVRTSADVVR-----SMYDLAGGTAIY.............................................................................................................................................................................. 111
6 -4.980PF17038.3; Q8U4V2_AGRFC/1-299; Cellulose biosynthesis protein BcsN  ali follow..  1..................................................................................................MASPSEALIFPPPGGPEI-------------VAVVNRTYSNAVAQQVILRSETTTPGQNYLKAEFFGPQQAGDTDRDALTFKGFR------ASSVAREIRAEFPGEAIAMSANYLQNGYGAFSYAYGWQDIRSPESM-LGRIKVRLRLCQSGASVERLLAVMYN............................. 161
7 -4.890PF10789.7; Q7Y5F2_9CAUD/11-117; Phage RNA polymerase binding, RpbA  ali follow..  20  13....................................................................................................................................................................NSVKIRKAWVSFISDIRANQLQAL-EQKIRFELYAEIDKMVRDTYIDLLVRRRES........................................................................ 66
8 -4.840PF13419.4; E0UR30_SULAO/3-179; Haloacid dehalogenase-like hydrolase  ali follow..  14  1..ILFDLD-GTLIDSTEAILESFHNSFAVY-----SPDDEQIKALIGHPLDVMYRELGMKEDMIWDFVN---TYKEHYRKISTQKTILLQNAKEAVESAAKFASLGIVTTKTGKYSQVLMEHFGLMDKFDVLIGREHVQNILRALFDTNNKEIWMIGDTQLDLISAKN........................................................................................................................... 169
9 -4.810PF00496.20; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle  ali follow..  14  43LNYVVSPESKVVTVQNVDWIKSAEKLGDYSVRLHLKKPFPPALEYLSNAVPMFPKKYFEQVGIAGFSRKPIGTYFKDSPQHINFRVIADAETRLAELNLKAMPNLVVTSGATMRIGFLILDARGTSSADSPMKHLKVRQAINYAINRDGLASQLVGGESKP----DTTAATVYNYDPAKAKALLAEAGYPNGFETEIFAYRDRDYVEA----IIGNLRAVGINAKLR................................................................ 317
10 -4.790PF05201.13; D3SML0_THEAH/7-152; Glutamyl-tRNAGlu reductase, N-terminal domain  ali follow..  10  10............................................................................ELREKLACGQEETPHILKLLASASGLKELMILSTCNRVELYMVGSAQDAKRAVEVYTDIKGADVGKNISFFLEKERAV---------------AHIFMVASSLDSMVVGEP------------QIVRQFKDAYLLARQASTVGKILNRLYQHALKTAKRVR...................................................... 143

FFAS is supported by the NIH grant R01-GM087218-01
9 9 7 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.