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11497065
Query: gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKMSEQESLQAQVAGEEELLVTKLHSEVLLLLGIDKFALSRQNFLLHLSLLQAILVTRGIDASSLTYEQIFLLTFYHMGCQLRKQGVVREFEFDRIKKEKFNELELDYYPSSSGGEEGGEGSCGSNKNFCSQLDAFLEKLKRETSTPSCVGVVLast
1 -30.600PF13029.1; Q6YI80_BORHE/1-68; Domain of unknown function (DUF3890 topsan)  ali follow..  31  6...............ESSEGFGETYLRIKALLDLSEEDLSFAKFEEQAKLLEMILNTRGVNLSTLNISQASLLLYYHI........................................................................... 68
2 -7.000PF09891.4; Q9UZF3_PYRAB/2-163; Uncharacterized protein conserved in archaea (DUF2118 topsan)  ali follow..  12  44.........DFVDLDRAKFLAKEIYDRFHFYVDQYEHRMKVDAIIVYPDRRTKIYLKKGDELLLLPVEGYVVTLIADVGNRVRKGDAF-----AAVTTRK----EVHYLKPPRPG...................................... 141
3 -6.900PF03940.8; MS84B_DROME/15-74; Male specific sperm protein  ali follow..  25  1................................................................................................................CGGPCGPCGPCGPCGSCCSPCGSCCAPCGPCGPCGPCCG.. 39
4 -6.630PF09783.4; YANE_SCHPO/5-186; Vacuolar import and degradation protein  ali follow..  15  115.............................................VYMRWKELAMLDKTVDYQNHNQSFPFGISFYYI-SFSQSTGKIKGYYYHHSEPEKVLFLELNPIID.......................................... 182
5 -6.530PF06374.6; NDUC2_BOVIN/4-120; NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2)  ali follow..  15  38...............................................SGLIDNAIRRRPVLLAGLHRQLLYITSFVFVGYYLVRDHDMFSYDFPEKDKKTYGEVFEEFHP........................................... 115
6 -6.000PF00068.14; PA21B_LATSE/28-144; Phospholipase A2  ali follow..  11  9.............................................................IQCVNKGSRASYHYADYGCYCGAGGSGTPVDYGEAEKMGCYPKWTLYTYDCSTEEPNCSTKTGCQGFVCACDLEAAKCFARSPYNNK..... 107
7 -5.810PF11407.3; T2MU_MYCSP/1-202; Type II restriction enzyme MunI  ali follow..  15  5.ELSGRLNWQALAGLKASGAEQNLYNVFNAVFEGTKYVLYEKPKHLK-NLYAQV---------VLPDDVIKEIFNPLIDLSTTQWGVSPDFAIENTETHKILFGEIKRQDGWVEGKDPSAGRGNAHERSCKLFTPGLLKAYRTIGG....... 139
8 -5.740PF03383.10; O62449_CAEEL/34-184; Caenorhabditis serpentine receptor-like protein, class xa  ali follow..  11  62..................LTFLMSIQRIYAVFQPFNQHFTNGKLWGYCAIVAIFSW-------------ILLLIPFFSHCPVNINQRVFSFAVACQERHPITSLQNKY............................................. 138
9 -5.730PF00522.13; VPX_HV2BE/5-99; VPR/VPX protein  ali follow..  13  21LERTIEALNREAVNHLPRELIFQVWQRSWRYWHDEQGMSASYTKYRYLCLMQKAI-----------------FTHFKRGCTCWGEDMGRE............................................................... 93
10 -5.360PF06574.7; Q8EBI3_SHEON/10-167; FAD synthetase  ali follow..  12  46....EPQPQELFRGENAPARLSLLRDKIVLLDELGVERLVCVNFNRAFADQPAEHFIEELLVRKLGIKYLVVGDDFCFGKGLKQAGTRYGFTVVSTQSFIVGSQRVS.............................................. 155

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.