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Query: gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKMSEQESLQAQVAGEEELLVTKLHSEVLLLLGIDKFALSRQNFLLHLSLLQAILVTRGIDASSLTYEQIFLLTFYHMGCQLRKQGVVREFEFDRIKKEKFNELELDYYPSSSGGEEGGEGSCGSNKNFCSQLDAFLEKLKRETSTPSCVGVVLast
1 -36.500PF13029.4; O50935_BORBU/1-84; Domain of unknown function (DUF3890 topsan)  ali follow..  32  1MNDSKLDTNQALSANENLESLQRVYEQILKLLMLDFKDLSIKEFFLYLNLLENILILKRIRIESLNDSTMFVLIYYFI........................................................................... 84
2 -6.550PF09891.7; Q5JEN4_THEKO/2-163; Uncharacterized protein conserved in archaea (DUF2118 topsan)  ali follow..  37..KENEELPDFIDPSRAKFLKREVYDRFYLYVDRTEQKMTADVILVLPDGRTRIYLKKGDELMILPVEGFTKTLIANVGNRVRTGDAFAAVTTRKGEVHYLKP.................................................. 137
3 -6.030PF11173.6; M4U4H3_9GAMM/1-79; Protein of unknown function (DUF2960 topsan)  ali follow..  15  1.......................MSRQVTYIFKKERKTILFT-YAVYHDIYEAVADAEGIDLTA------FLAQEKQLEMSCRGQGIVKNHRQTEFLRMGFKDIKF............................................... 76
4 -5.730PF06574.10; Q8EBI3_SHEON/10-167; FAD synthetase  ali follow..  12  46....EPQPQELFRGENAPARLSLLRDKIVLLDELGVERLVCVNFNRAFADQPAEHFIEELLVRKLGIKYLVVGDDFCFGKGLKQAGTRYGFTVVSTQSFIVGSQRVS.............................................. 155
5 -5.650PF00522.16; VPX_HV2BE/5-99; VPR/VPX protein  ali follow..  13  21LERTIEALNREAVNHLPRELIFQVWQRSWRYWHDEQGMSASYTKYRYLCLMQKA-----------------IFTHFKRGCTCWGEDMGRE............................................................... 93
6 -5.590PF11801.6; G8ZQF4_TORDC/168-308; Tom37 C-terminal domain  ali follow..  12LAQSKTFKVTQQNKRKGKEELQNAKFNMQYLNKLSE-------------LKVWIQVRERAMSEKVIPADLLMWANIYVQLQLPDKDKVATH------SQTLGSDFFATLQKQLDLCSHFEPIIPFREPTFQEQGNAIMSI............. 134
7 -5.550PF02754.14; F2Z6A8_SULAC/148-238; Cysteine-rich domain  ali follow..  15  1.........................................................................VGAYYGCQMLRPEEIMGFE--HSMEDLIRVTGATPVSFKAAKSCCGFPLMGSNPKVGLRLAYGVLKSAKEEQADIII... 80
8 -5.550PF00086.16; E5S275_TRISP/152-222; Thyroglobulin type-1 repeat  ali follow..  10  1...............................................................................CEQKREEGLLA---SRHAGGSKVSIQAAFIPECLPDGSYQPIQCDIFSLTCWCVDQDGIEKTGSRVTG...... 65
9 -5.380PF16497.3; G1L1W7_AILME/2-199; MHC-I family domain  ali follow..  50............LDELQTHGWDSKTGAFIFLWPWSRGNLSNEEVIRAEEAFYSNSIGLPLCFHDHFSEW--FQVQLTGGCELHFGEPSVGFIRIAYEGSDLVSFQNMSWWPSPEGGSRAQQVCRLFNQD-HEDNELMHKLITDHCPRYLSSLL 192
10 -5.310PF12851.5; TET1_MOUSE/1528-1931; Oxygenase domain of the 2OGFeDO superfamily  ali follow..  22  4..........................................................................MYFNGCKFGRSENPRKFRLEKQLEKNLQELATVLAP........................................... 46

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.