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Query: gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGGFNMELFDENYYAKAVANIIGEVKDPIMYKWFSPDQIEDVDLQMGYQKTVKWDAFLNANPTTIANEVNTISTIGFSSEVVRLNYLKLQYKFRHLKQTSEKFYTSDSYIGDINNNLLPFAQAYKLASSEIIKLINHFVLTGTVSIQKDGKNQKRLLPNMYGLLNMPEQIKEEVASGDKDKMDKIFEKIEAGLSKLELGDEFSTPMMVIVDPATSLKLVKPYAAAQGAASSCEKWEDVLIQTIKAINNREDVYIETSNLLKHKILIYPLNSELIKFKPSKYMLPTPNEQVDKDSTDVAHSYIDFVLGGLLATRKTILQVNIKQSLast
1 -9.480PF09950.7; H8L668_FRAAD/90-334; Uncharacterized protein conserved in bacteria (DUF2184 topsan)  ali follow..  13  1.......................................................AWVGKD----ASAITGLGDIGKTMHPLSLWAMQIGWTIPELASAQQLGRPVDQ-------------QKFAGMNLKHQMDIDEQVYIGDTVL------------GLEGLVNSSAVTTTNVVNGSSKTPKEILADFNAILNLAEASAYAVCPTKVLIAPAKYSILTQPVSEAGNISILEYVRTNCISHNVNG----RPLDIQPVKWLADRMVAYTQEMDRVRFP----YVPLQRTPLEYRDLRQLVTYFGRLGAVEFVYPETLAYAD.... 244
2 -7.240PF04454.10; Q08WR7_STIAD/2-266; Encapsulating protein for peroxidase  ali follow..  13  69..................................................................QETATVFTDVRKFKTIPIIYKDFLLHWRDIEAARIHNMPLDV-------------SAAAGAAALCAQQEDELIFYGDPKL------------GHEGLMTATDR--LTVPLGDWATPGAGYVAIVEATRKLNEHGHYG-PYAVVLSPRLYSLLHRIFEKTGVL----------EIETIRQLASDG---FQSNRLRGDSGVVVSTGRENMDLTVAM---DMVTAYLGASRMNHPFRVLEALI.................. 265
3 -5.460PF02177.14; H3A528_LATCH/10-110; Amyloid A4 N-terminal heparin-binding  ali follow..  14  11......................................................................................................................................VNMHMDVRTGKWEPDPSGVESCFRNTDEILNYCQKVYPDLQITSATRPVTIDNWCRKSRRKCKGHQRIVVPYRCIAGEYVSEALLVP....................................................................................................... 100
4 -5.160PF03723.12; T1I7V8_RHOPR/426-679; Hemocyanin, ig-like domain  ali follow..  12  9.................................FPGVRIKSAQIIGENLSPNTLATYWQKSDVDLSRGLDFTPRGSVYARFTHLQHVPFKYKIEVENNGPPKAGTLRIFISDERQLPMLFRDQKNLFV-EMDRFKVT-LKSKMNIIERSSEDSTVTIPFERTFRNLDANRPDEGSRQADQ-----FNFCGCGWPHVPKGTADGYPCTLFV-------MVSDYEQDKVSESRTGTCDDAFAYC-----------IRDSVYPDKRSMGFPFDRQPRTGANDLRLFMTPNMIIQ................................. 248
5 -5.160PF14550.4; XKDF_BACSU/39-157; Putative phage serine protease XkdF  ali follow..  15  4...............................................................................................................................................LFTKSEQDEQKLV----YGIVYEPDVPDAHGDFMTAEEIEKAAHGFLAEAREIDINHSFEGGTGVVVESMIGSKRITKGSWVLVTRASDEVWEQIKAGIITGYS............................................................................. 110
6 -4.940PF05044.10; PROX1_CHICK/578-731; Homeo-prospero domain  ali follow..  14  6..............................................................................................HLKKAKLMFFYTRYPSSNMLKTYFSDVKFNRCITSQLIKWFSNFREFYYIQMEKYARQA----------------INDGVTSTEELSITRDCELYRALNMHYNKANDFEVPERFLE--VAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQ............................................................... 154
7 -4.870PF07068.9; CAPSH_BPKVM/3-495; Major capsid protein Gp23  ali follow..  13  236..................................................................SSNNEWNEMSFRIDKQVVEAKSRQLKAQYSIELAQDLRAVHGL-----------AELSGILANEVMVELNREIVNLVNSQAQIGKSGWTQGAGAAGVFDFSDAVDVKGARWAGEAYKALLIQIEKEANEIGRQTGRGNGNFIIASRNVVSALSMVGPAAQGMQDGSMNTDTNQTVFAGVLGGRFKVYIDQ-YAVNDYFTVGFKGST-VFYSP--YVPLTPLRGSDSKN.............................. 460
8 -4.800PF11305.6; L0ISP1_MYCSM/1-73; Protein of unknown function (DUF3107 topsan)  ali follow..  15  6.................................................................................................................................................................GVTDSPRELNFNSAQTPSEVEKLITDALSKDSGVLALTDEKGRRFLVQASKIAYVEI.......................................................................................................... 62
9 -4.780PF07583.9; L0DB70_SINAD/169-373; Protein of unknown function (DUF1549 topsan)  ali follow..  12  2..................................................................................................................................IDAFILAKLESEGMSPSEQADKRRRATFDLIGIPPTATEIEAFEADHTPDAFAKVVERL---LASPHYGERWGRHWLDVARYADTKGYVFN---EERRYPYSYTYRDYV---IRSFNEDLPYDQFLLQQIAADRLPQDGNTQPLAALGFLTVGRRFLNNQQDIIDDRIDVVTRGLLGLTVACAR.......... 179
10 -4.680PF05983.9; R4X872_TAPDE/8-173; MED7 protein  ali follow..  15  8...........................PKEFELFTNANLEA--YRQDPASVGDLVARAMQPPDTPTKAYSVFGAT-----------WQIEDKLPTLQDSGLEQLYPDGY--DLVLELKKLSRSLMLNYLELITIMS----IAPEQFPGKVEHLRLIMINMHHLINSPHQTRESLIVVMEQQIARRTRETED..................................................................................................................................... 154

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.