current user: public


Query: gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320
# Score Template Links and tools%idFirst MGGFNMELFDENYYAKAVANIIGEVKDPIMYKWFSPDQIEDVDLQMGYQKTVKWDAFLNANPTTIANEVNTISTIGFSSEVVRLNYLKLQYKFRHLKQTSEKFYTSDSYIGDINNNLLPFAQAYKLASSEIIKLINHFVLTGTVSIQKDGKNQKRLLPNMYGLLNMPEQIKEEVASGDKDKMDKIFEKIEAGLSKLELGDEFSTPMMVIVDPATSLKLVKPYAAAQGAASSCEKWEDVLIQTIKAINNREDVYIETSNLLKHKILIYPLNSELIKFKPSKYMLPTPNEQVDKDSTDVAHSYIDFVLGGLLATRKTILQVNIKQSLast
1 -9.630PF09950.4; Q46YM7_CUPPJ/97-345; Uncharacterized protein conserved in bacteria (DUF2184 topsan)  ali follow..  13  7..............................................................SWIGKDASAIAGIALDIGKTANPLTLWGMQIGWTIPELESAQKLGRPVD---------QQKFAGMQLKHNMDVDEQVYIGDTVL------------GVTGLVNNTLVTNVSNAATGNATPDQILADVNELLTSVGASAYAYCPSELRLPPAKFSILVSAKVSSAGNIS---VLEYLKQNTISNSINGRPLNIQPLKWLADRMMAYTKEQDKVRF----PMVPLQRTPLEYRDIRQLTTYFGRLGVVEVVYPELIGYRD.... 247
2 -6.680PF04454.7; Q08WR7_STIAD/2-266; Encapsulating protein for peroxidase  ali follow..  12  84...............................................................................................IPIIYKDFLLHWRDIEAARIHNMPLVSAAAGAAALCAQQEDELIFYGDPKL------------GHEGLMTATDR--LTVPLGDWATPGAGYVAIVEATRKLNEHGHYG-PYAVVLSPRLYSLLHRIFEKTGVL----------EIETIRQLASDG---FQSNRLRGDSGVVVSTGRENMDLTVAM---DMVTAYLGASRMNHPFRVLEALI.................. 265
3 -6.400PF13814.1; Q5LU27_SILPO/33-231; Replication-relaxation  ali follow..  12  16.........................................................................................................................................YELTRDTHRCKDTTLRQMQKLRAGGYLSLPHQQRATERAEFNPYIYDLTQKAEDHLFDLGIDEPTVRPTGHWWHSYMTSCVTSAIDIAALRAGVRFIPAHEI---LAIKDVDLAIPIGRAHLIPDQLLDYGGRYRAFALEVDRGTEPKTSPAKRKSWKRSIEQYRQIIEKQRYKRHYGL........ 193
4 -5.790PF00885.14; Q5FS93_GLUOX/14-155; 6,7-dimethyl-8-ribityllumazine synthase  ali follow..  10  6...........................................................................................................................MAIVVSRFNTNITGGLKNGSLEWLEERGITDVDVYDAPGAFELPLLAQRLAKSGKYEGVEFISLGATIGIMQAQLATEVPIAFGILTTYTEQ------QAVDRSRKDAENKGREAAAACVESVAFLRNV........................................................................ 142
5 -5.770PF12534.3; B3DLX1_XENTR/1-65; Leucine-rich repeat containing protein 8  ali follow..  21  5...........................................................................................................................................................................................................TEFRQFSEQQPAFRVLKP-------------WWDVFMDYLSAAMLMIGGFGCTLQIMPVKILCLPERLQ.................................................... 60
6 -5.470PF11305.3; A4TFD4_MYCGI/1-74; Protein of unknown function (DUF3107 topsan)  ali follow..  14  6.................................................................................................................................................................GVTDSPRELVFASAQTPAEVEKLVADALSGEPGVLGLTDEKGRRFLVQSTRIAYVEI.......................................................................................................... 62
7 -5.220PF09776.4; RM55_BOVIN/7-125; Mitochondrial ribosomal protein L55  ali follow..  17  49..............................................................................................................................................ILLVKQDGSTIHIRYPEPRRILTMPVDLDSLSPEERRARFRKREGQLKEKKEEPELADDFDV........................................................................................................................ 110
8 -4.880PF07583.6; A6BYQ2_9PLAN/160-373; Protein of unknown function (DUF1549 topsan)  ali follow..  18  1................................................................................................................................NPIDAFVAARHQSAKVQPAPQASKRRRLYLDLTGLLPTPEEVAVFVADEDPAAYEKLVDTL---LASPHFGERWGRFWLDLARYADS-------YLGDSIRPHAWVYREWV---IQAINEDMPFDQFSIEQLAGDLLEKPTDTQLI.................................................. 138
9 -4.690PF09696.5; Q4WPV9_ASPFU/23-159; Ctf8  ali follow..  16  10...........................................................................................................................................................AILELQGTINLPSLDDQGAVPRSADADDPNAAITTFEIGKLMFPDYKRVYLYVGRYQRMTKKLAQPLALVQKRKKRPDDNNG---------AESEGEELEIVEIIKYKLLFKNRPEPV................................................... 137
10 -4.580PF08644.6; A5E7S6_LODEL/549-702; FACT complex subunit (SPT16/CDC68)  ali follow..  12  1.................................................................................................................................................IHIDYKNQTIILP-ISGRP-VPFHINKSGSQNEEGDYTYLRLNFNSPGAGGNVTRRVELPY----EDSPDNTFLRSITIRSKDRDRMVDVFKAIQDLKKDSVKRDQERKQMADVVTQANLIEFKGSRVKKLDN--FVRPTPDTKKLGGVLQIHENGLRY.................... 154
FFAS is supported by the NIH grant R01-GM087218-01
4 7 3 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
 Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.