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Query: 1nj8_A mol:protein length:459 Proline-tRNA Synthetase, from PDB0516

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSHMLEFSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGKFRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFENFITILEDINPDEIKNILSEKRGVILVPFKEEIYNEELEEKVEATILGETEYKGNKYIAIAKTYLast
1 -33.000TM0514 TM0514 282387 Selected-2001-10-12  ali follow..  23  2.RMKDLYAPTLKETPSDVETVSHEYLLRGIYTYLPLGRRVLLKIENIVREEMNRIGAQEILMPILQPAE-LWKQSGRWDDYGPEMMKL----KDRHERDFTLGPTHEEIVTDLVKNELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIM-KDAYSFHASWESLDETYEQFKKAYSRIMERLGVRYAIGGNASHEEFLGVPPSKIVKSLLYKGKGIELGHIFKLGTKYSEAMKAYFMDENGEMKPFIMGCYGWGSRTMAAVVEHFHDENGMIWPLSIAPYTVVVDIL--NMNDAEQKQVGEKIYQVLSEGEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKEGVVELKKRYSKELVKVNIKNGFGALLETLEKMKREY......................................................................... 570
2 -25.200TM0740 TM0740 282610 Purified-2001-12-18  ali follow..  20  219AFAKKEDLDNYLKFLEEAQRRDHRKLGPGMPFFLPKGVVVLNELMKFSRELHRERGYQEIFTPLIMNEQLWKISG-HWDHYAENMYFIEKD-----EERYAVKPMNCPGHILVYKSRTVSYRDLPLRFFEFGRVHRYERSGVHGLMRVRSFT--QDDAHIFCTPDQIEEEILGVLDLINTIYSQFGFTYRVELSTMPEDHMGDEAIWEIDFHIRDGREWQCATIQ-LDFMMPEKFNVTYIGPDNKEHMIHRAIYGSLERFFGILIEHFAG----AFPTWLAPIQVAVIPI-----SEKHNDGAEKVARRISEGFRVFFDNRRETLGYRIRQAQTQKIPYMIIIGDKELESGKISVRTRTGKEIKDVDPEHFVETLRNEVLSRKLELSMEG..................................................................... 640
3 -11.400TM1379 TM1379 283240 Crystal|NMR-2004-06-10  ali follow..  17  142..........HWDLGPAWGLMDFSRASK-FTVMYGKLARLERALINMLDVHTKEHGYTEVWVPHLVKRETITITGQ-LPKFEEELYLAE-------RDDLFLIPTAEVPLAALHSGEILEEKELPKKYVSYTPCYRREAKDVRGMIRQHQFDKVE---VWVTTPERSFEDLEELVKDAETILRKLELPYRVVSLCTGDLGFTSAKTYDIEVWLPSNAYKEISSCSNVTDFQARRGNMRYRRRSDGKLEYVHTLNGSGIRALVAILENYQQPDGSVRVPEV................................................................................................................................................................................... 414
4 -10.100TM1090 TM1090 282956 Crystal|NMR-2005-04-06  ali follow..  17  6..........................IKGTNDIFGEEIWYWRYVEETFRNVCESAGIEEIRTPIF----------EQTELFVRSVGEESDIVQKEMGRSITLRPEGTAPVVRAFLENSLIDRGFQQRYYYIGPMFRYEKPQS----RLRQF---QVGFEIIGPESPKAD--FEVIMLVDTFLRRLGLTKYKGCPVCRKNYREALKEY--HEYSLNAPKSVDYLCDSCRAHYKKTFEIEYVEDHTGLDYYTRTVFEVRHEGLGAAIAGGGRYDGLF-VPALG-IERIILALKAEGIEEKAFMDGVRLAGELRKGLSVDVDIMDRKLSGQLKHASRMGSRYAVIIGDEELEKGIVILRDLETGDQVEIDRDFAADYIAERVSK.............................................................................. 419
5 -5.470SC.A20848A BC009808 424755 PDB-2014-01-23  ali follow..  16  12................................................................................................................................................................................................................VDENLPDGTHLQPGTK------FIKHWRMKNTG---------NVKWDTKLKFMWGNLTLASTEKKDVLVPCLKAGHVGVVSVEFI---------------------------APALEGTYTSHWRLSGPRVWCSIIVDPFPSEE........................................................................................................... 121
6 -5.210SP14056B ZP_03460275.1 407399 Purified-2010-09-29  ali follow..  13  33.......................................................................................................................AIYRLPLMERAFLCCRYFEGWHSEKHYPYVGWGHKLLPNEKYSARTMTKRDADELL------------------RKDLRKFVAMFRKFGVDSILLGTLAYNVGPAKLLGSKIPKSTLIKKLEAGDRNIYREYIAF-YKGKRHAMLLKRRKAEFALLYIP..................................................................................................................................................................................... 175
7 -5.030SP17151A ZP_02066616.1 408582 Purified-2010-05-29  ali follow..  10  338....................................................................ETYQSMWKFCMAEKDSLDMMFIASWSDYTEGHEIEPTIEDRELRTTLKYAAEFKTLPLMLFRLRKEARFLEKTKMDVSACQRSLDKAALLISQGRYPVAIGLLSQIENDVKTAKSALAVEMMR-LRESDMKIQGKRKSGGYSAEETLSISLPKELVSKLMNNYVGYLYFEYLDKGNESLFIRSSTLREPKEPFKIVSRIRTDNTGE----KSAKVEL---------YKDNIVNGFNMPTFYLKGNVVVR------NLSLGYTIYTVK............................................................................................................................ 597
8 -4.890MJ15794B YP_002550744.1 402292 Crystal|NMR-2009-11-20  ali follow..  17  33...........................................................................................................................................................EQHGPHLPFETAQGVVDRLILALPDTLPVTFLPVEVGYSVEHMDVFG---TRTLETLSGQGRKLMMLNAH--GGNSPLMTVVATEARIRFSMLAVATSWTRFGQPDGLIIDIHGGDIETSVMLALRPDLV----------AMDKAQNFSSRQSEFAARFTHLRAYGPHAFGWKMADLNPLGV-----AGN----------ASVATAEKGENLLSHAVHGLVELLWDIHD........................................................................... 256
9 -4.880SF15522A NP_628111.1 423175 Purified-2011-08-24  ali follow..  14  2................................................................................................................................................................................................................MSFLVSEELSFRIPVELRYETRDPYAVRLTFHLPGDA-----PVTWAFGRELLDGVGRPCGDGDVRIAPVEPEPLAEVLIRLQVGSDQALFRSSAAPLVAFLDRTDKL--------------------VPLGQEGALADFDSHLDEALDRILAEE................................................................................................ 132
10 -4.780SSG15522A SSGA_SAVER 394831 Purified-2009-09-08  ali follow..  13  5..........................................................................................................................................................................................................VQAEVMMSFLVSEELSFRIPVELRYETCDPFAVQLTFHLPGDA-----PVTWTFGRELLDGVGRPCGDGDVHIAPADREAFGEVLIRLQVGGDHALFRSGAVPLVTFLDRTDKL--------------------VPLGQECSLADFDAHLDEALDRILAEE................................................................................................ 141

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.