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402966
Query: MJ0622H YP_385125.1 402966 Selected-2009-06-20, from JCSG0709

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVLMICNTDGALYVFRKPIINRLVACGHEVDSISAASRYFEPLNALGVHPLQLDFARHSVSPLSNVRLFRALYAMVRRLKPDVVHNFTHKPAILGSIAARLAGVKGIFITITGLGSLFVHDDPKTRLMRYLLLAQYKFALGFVDTVFFQNPDDMEYFVSKKLVGAGKAVLTYGSGLDLDEYRLPSTEEIARARAMLGAELGVDLRGRKVALFPARGVPEKGFFEFYRAAKTINALEPDAYAFLHLGLVDADAARRISKEGMEQYAADCGVKYLGFKDNIKDYMIASDIVVLPSSYREGTPRSLIEALALGKAIVTTDMPGCRETVIDGWNGYLCRKGDEQSLVAKLLAVDGEMLTAARSRSRRYCETKYDAAWLADLTLGRYQGSLNSELast
1 -62.600d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  2..VAFCLYKYGGLQRDFMRIASTVAARGHHVRVYTQSWEGD---CPKAFELIQVPVKSHT-NHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKG------FLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPER-FQILPPGIYPDRKYSEQIPNSREI----YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVG----QDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQ-EAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIEPFSQEQLNEVLALTQSPLRMAWAENARHYA-DTQDLYSLPEKAADIITGG.... 370
2 -48.400d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  14  1MNVLSVSSEIGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAVQHERLDLLILDADNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMAETPEIPSLLTIHNIAFQGQFGANIFSKLEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGIVNGIDADVWNPATDHNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVL------GAGDVALEGALLAAASRHHGRVGVAIGYNESHLMQAGCDAIIIPSRF-EPCGLTQLYALRYGCIPVVARTGGLADTVIDANTGVQFSPVTLDGLKQAITVRYYHDPKLWTQMQKLGMKSDVSWEKSAGLYAALYSQLIS.. 477
3 -41.900d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}  ali model 3D-neighbors follow..  14  1...............................................................................................................................................................................GIDCSFWNESYLTGSRDERKKSLLSKFGM-DEGVTFMFIGRFDRQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILELSRSDLSKFRENCKKRAMS...................... 194
4 -39.200d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  18  3......................................................................................................................................................................................................TSKFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIV----GWFSKGDHAERYARKIMAPDNVKFLGSVEELIDLYSRCKGLLCTAKD-EDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNA-DVNEIIDAMVSKNPD---KFKKDCFRRAKE...................... 165
5 -31.700d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  2.RLVVVSNSAGGLAVGILGALKAAGGL-----ETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLH--PEIFNALPTYDTLLEQLCFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPK----LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHTQIAPTSRGDVQAYQDIRHQLENEGWTPLYYLNQHFKLLMKIFRYSDVGLVTPLR-DGMNLVAKEYVAAQDPANPGVLSQFAGAANELTSALIVNPYDRDEVAAALLTMSLAERISRHAEMLDVI-VKNDINHWQECFISDLKQIVPR. 456
6 -15.600d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  2.RLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLPKHGIEIDFIRISALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNG-----------------IAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVL-----------------------ALPLPQQRLAGREGPVRVLVVG----SQGARILNQTMPQVAAKLGDSVTIWH--QSGKGSQQSVEQAYAEAGQPQHKV--TEFIDDMAAAYAWADVVVCRS------ALTVSEIAAAGLPALFVPFQHKDRPLEKAGAAKIIEQPQVDAVANTLAGWSRETLLTMAERARAASIPD-ATERVANEVSRVARAL.... 351
7 -13.400d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}  ali model 3D-neighbors follow..  12  1MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPP-DCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEAIATVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPS-WERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPT--------LDAVQTGAWILPDERPLSPELAAFLDAGPPPVYLGFGSLGAPADVRVAIDAIRAH-----GRRVILSRGWADLVLPD-----------DGADCFAIGEVNH-QVLFGRVAAVI----HHGGAG-TTHVAARAGAPQILADQPYYAGRVAELGVGVAHDGPTFDSLSAAL-ALTPETHARA-----TAVAGTIRTDGAAVAARLLLDAVSRE. 401
8 -11.900d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  3KRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGEQLRQALSLFGIQERNLDVMQERQALPDLARILPQAARALKEMGADYVLVHDTLTTFAVAWAAFLEGIP-VGHVEAGLRSGNLKEPFPEEANRRLTDVL-------TDLDFAPTPLAKANLLKEGK--REEGILVTGQGVDA-----------VLLAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYP--VHLNPVVREAVFPVLKGVRNFVLLDPLEYG-SMAALMRASLLLVTDS------GGLQEEGAALGVPVVVRNVTERPEGLKAGIL--KLAGTDPEGVYRVVLLENPEELSRM-----RKAKNPYGDGKAGLMVARGVAWRLG.. 363
9 -10.700d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  1MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEA-IPMPLGHGALEIGERRKLGHSLREKRYDRA---VLPNSFKSALVPLFAGIP-----------------------HRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYIALAYDKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAK-HYHYAELAKQLIDEGYQ---VVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQQAVILIAACKAIVTNDS-----GLMHV-AAALNRPLVA--------LYGPSSPDFTPPLSHKARVIRLITGYHKVRKGD--AEGYHQSLIDITPQRVLEELNALLLQ..... 345
10 -8.580d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}  ali model 3D-neighbors follow..  10  9.ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMASQPQIQLIDLPEVEPPPQELLKIPHVKATIKTILSNKVVGLVLDFFCVSMID--VGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSN------SAEKKVFPEGFLEWMELEGKGMICGWAPQV-EVLAHKAIGGFVSH---GW-NSILESMWFGVPILAEQQLNAFRLVKEWGVGLVVAAEEIEKGLKDLMDKDSIVHKKMKEMSRNAVVDGGSSLISVGKLIDDITG..... 461

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.