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Query: [U] COG3946 Type IV secretory pathway, VirJ component, from COG0516

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKQFKIRSVLQSIALLVLAGTAAAEPKPEKITHGRFEQIPVLRPDGEPQRVVIWFSDAGHVDQRTRQAEILRQDGAMVALVDTTHLYKVLAADSNHCTFSVGDVENLSRYLQAYYRDKTYRLPLLVGDGDGSGLVYAVAAQATENILAGVVSDGLCPVVVPTQAVCGAGVASDQHLKPAPVAAPLLVMTVSSAHCPAQLTSGFVRKVALGREIRLAASADLLPRLRAALRVLGAQKGVSLPPPPADLDGLPVVEVPSKAQKKSDTFAIFVSGDGGWAEIDKKVAGHLADADIPVVGLDSLRYFWSERTPEGFAKDLDRIARFYAHHWKRNRLLLVGFSQGADVLPAAINKLSPNTRQIIRMTALLSLGKYAHYEFHVSNWISTDDEGIPIAPDMVKLRSTRTVCIYGVDDQETLCPSLPQQNRRVALPGTHHFNGDYETVAKTILAQMEAAPLast
1 -76.500SP18880A NP_249610.1 413131 Selected-2009-11-12  ali follow..  25  3VVKRHWRRFLVAALVLIVGARPAAQAKLEALDLDDGGHATLAEPGEKPRSRVVVIAAPEQQLNDAQMLNLAHDSAARVIQYFP--------PENGDCRAQQSRLEAVIARLG-------GKPNLVAGIGPGSTTAWRWLASQDDDK-AKALSVGFDI--ALAERDCDAPLPHQ---------ASHGQWLLAWNDNPDDDTAVFVRKQSSAE----------TSISDYDTPLSDVLAHQLRLQLQGNAEALPVLEVPA--AQPSDIVTLFYSGDGGWRDLDKDSAEHMASMGYPVVGIDTLRYYWQHKSPEQSAADLSKLMQHYREKWGAKRFVLAGYSFGADILPAIYNRLPGKDQQQVKAMLLLALARTGSFEIEVEGWLGKAGEEAATGPEMARLPAAKVFCIYGAEEKDESGCTQSAVGEKLELPGGHHFDEDYLSLAKKMLQAIRDRE 422
2 -32.600SP9278A NP_252385.1 413225 Purified-2012-06-07  ali follow..  14  47..................................................................................................................................................................................................................................................TTADGVRLRAWWLPAKKGVPVKGTVLYLHGNGGNLSWHLGGTWWLPAEGYQVLMLDYRGYGQSEGQPGLVYRDIDAAFAWLDQAVKGTERVLLGQSLGGALAIHYLAEHPQR-QGQFKALVFDGVPASYRGIARPLSWL---PDDDSAIHSVARLSGAPMLFFHSIDDTIVPYRQARPPKVLQLTRGGHVQTFAEATWQEVMLRFLDDP. 277
3 -32.100MA4386A NP_853511.2 400010 Cloned-2008-02-06  ali follow..  14  26.................................................................................................................................................................................................................................................................AALRDGNPIIVYLHGSAEHRAASHRLVKVLSDGGFHVLSVDYRGFGDSTGKPTELTTDAICVYEWTKARSGITPVCLWGHSLGTGVATNAAKVLEEK-GCPVDAIVLEAPFTNMWFLRTLMDALRKDKIIFPNDENVKFLS-SPLLILHGEDDRTVPLEYGKERVKMVIFPPGHNLLCKSPTLLITVRDFLSKQ. 253
4 -31.000TT9403A YP_096609.1 404340 Selected-2009-08-14  ali follow..  15  49...............................................................................................................................................................................................................................................KVVSLRTKDNLHLKSWYKPASKH-RPTILYLHGNAGHIGYRMPLVREFIDAGLGVFLLEYRGYGGNPGKPGELYEDGETAIEFLIQHVPSKRVILYGESIGTGVATHLATKYP------VCAVILQSPFTSLT-QYHYPLNFLKPWDQYNSLARMKKIN-APILVLHGKLDQIVPFNEANEPKKMVSFDDKEHND-SADNFSREIIQFALN.. 264
5 -30.300PG9920A NP_636912.1 372467 PDB-2007-07-09  ali follow..  2......................................................................................................................................................................................................................................................................SRGHCILAHGFESDALKVTALAEVAERLGWTHERPDFTDLDARRGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVP------TRALFLMVPPTKMG--------------------PALDAAAVPISIVHAWHDELIPAADVARSARLLLVDDGHRLGAHVQAASRAFAELLQS.. 174
6 -28.800TT4058A NP_890800.1 404797 Selected-2009-08-14  ali follow..  10  56...............................................................................................................................................................................................................................................EVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWTRMGYSMLAIDYRGFGQSTPSEQSASQDAAAALQELARRPDPARRFIYGHSLGGAIAIDLAAR---PDLPPFAGLIVESSFTSIGAMLGTMKW--LVTQPFASVDKLAALT-TPMLLLHGTADRVVPHTMSDELKRLVKIEGASHSG---RIYEDAVADFVRDA. 286
7 -28.100FN9278A NP_069509.1 378945 Crystal|NMR-2007-10-13  ali follow..  14  13...................................................................................................................................................................................................................................................................RIYVERALIVCHGGSVVEKSYTDLAGFFSKRGFPTLIFDFSGTGLSDGH-KAWVEDLLRIAENF------EEVSILGYSMGGAVAVRAAAELR-----NLRKMVVVSSPCCLDSFESFKNLFLKEFTEIEPKNWIGDVG-AEKLIVHGRLDEIVPYNLAREPKAFVEVEKGDHFLRHDNRIVELIAEWLDG.. 229
8 -27.000MA4386B NP_056415.1 400409 Selected-2008-12-22  ali follow..  13  162.................................................................................................................................................................................................................................................................DALASSHPIILYLHGNAGTRGGDHRVYKVLSSLGYHVVTFDYRGWGDSVGTPSEMTYDALHVFDWIKARSGDNPVYIWGHSLGTGVATNLVRRLCER-ETPPDALILESPFTNIRFDWFFLDPITSSGIKFANDENVKHIS-CPLLILHAEDDPVVPYSIAAPARSFRDFKYRHKYIYKSPELPRILRPQQGP.. 391
9 -26.900PU4107A NP_744385.1 381539 Purified-2009-01-30  ali follow..  13  38...................................................................................................................................................................................................................................................................PGTKMPGILFVHGWGGSQQRDLARARHITGLGCVCMTFDLRGHEKTESQRLTVTQDLLVAYDRLVSH-DSSAIAIIGSSYGGYLATLLTRERP------VRWLALRVPAMYWD-RLNAYRQRPLGPTDNRALAACAEFGG-DVLLVESEQDDYVPHSTLMNYRSAFVVDGDHALSSEQKAYSSLLAAWISE.. 252
10 -26.500SP17763A ZP_02422265.1 411221 Purified-2010-11-20  ali follow..  12  66..................................................................................................................................................................................................................................................PSKRGYKYTGFYYHDESYDSFRGLIVFSHGIFDGQLSYLPEIAYFARRGYKIFAFDNSGSHLSGGKSLRGAEDLDAALSFVTKT-NTLPLYLFGHSWGGYAVSAVHCYHLYDIKAVFVQSGFDRTSEMVLEEGSYERMKYGKAAGYTAHAGIAKATGTKFLILHSTDDKTISNVEKNDNITLITEKNKGHDSDRAIKHKAQLDTLFET.. 304
11 -26.400FN12674A YP_462338.1 379822 Purified-2007-10-12  ali follow..  11  7..........................................................................................................................................................................................................................................................NFLFETERKDDTAAMKHVFIHGLES--SGQGDKGRYFRERYPDMIIGDYTG---------SLQERMQTLYKRLEGE---SDLILVGSSYGGLMAAIFACEQET----RVRKLVLLAPALSL----------------PDFDPYLARHLPIPTAVFHGSGDEVVPPEPVRKIAEYHRVDDDHSLHGTFSTMDWDALLEV.... 177
12 -25.900TT16507A MMAG_12JAN01_CONTIG3832_REVISED_GENE2166 404608 Selected-2009-08-14  ali follow..  16  14............................................................................................................................................................................................................................AAVMLMGASLPASAEAVTEEFKIASKWPGQNLYLRNKHPAAKPEKTVLFLHGATYPAHSSQSWMDWMAARGYDVYSLDIRGYGKSGHPPEDAVDDVTRAVDFILSRRNSQRIVLVGWSWGATLAGSFANTSQ----DKVERLVLYAPQWLRDVTPPSDADLARVPASGKPRWNPERLS-VPALVIQGEWDAEAPPSMGMPYKRYVMVGEATHMEKNRKQLYQAVAEFLESVP 345
13 -25.800SP10917A YP_095190.1 412080 Purified-2010-09-29  ali follow..  14  48.................................................................................................................................................................................................................................................................VNSRHPGEVIVLIHGLMRTYVSMKPLKAYLEAQGYQVYLYK---YPSARYNIQEHGVYLNQFITTILENNPAIKIHFVTHSLGGIIVREALSKLSQKQLKHVGYLIMLAPPNQGSMISYFIKPLAELSSEQTSYVHRVPVPDIKMGIIAGRFDAKVPPDYLQGQTEQVIINNTHTFIMYDSKVKKLVLSFLEKG. 251
14 -25.500FP4107A NP_639225.1 383078 PDB-2009-11-23  ali follow..  11  24....................................................................................................................................................................................................................................................................PTGMPGVLFVHGWGGSQHHSLVRAREAVGLGCICMTFDLRGHEGYASMRQSVTDDIKAAYDQLASL-DAHSIAVVGLSYGGYLSALLTRERP------VEWLALRSPALYKDAHWDQPK-RALAPGDNLALAACAQYKG-DVLLVEAENDVIVPHPVMARSLTSRVIAGDHALSVHQQEYTRALIDWLTE.. 238
15 -25.400GS9198G YP_878415.1 384027 Purified-2010-09-29  ali follow..  16  69....................................................................................................................................................................................................................................................SKNEDVLLKGWWIPAQKQSKKTIIFSHGYGNNRELHKTLAKKLCENGYNVLLFDFRASGESEGKVVTIGYDLLGAIDFVKNKKQSKEINLIGWSMGATTSILAGTE-----STDVKAIVADSPFGNLKDYLQLPKIRGFSIEDVDTIKAASNMSNKKLFLIHSKDDEAIPYENTKGCAEIWITNNAKHYSLYKDQYEKRIIEFFET.. 315
16 -25.100SP16046A NP_251743.1 413214 PDB-2012-05-04  ali follow..  15  15....................................................................................................................................................................................................................ACGPALASQAPVYGERLEGFDYAYPVHYLDFTSQGQPLSMAYLDVAPKKANGRTILLMHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYSFQQLAANTHALLERLGVARASVIGHSMGGMLATRYALLYP----RQVERLVLVNPIGLEDWKALGVPWRSVDD-TQPVVYELDRLQ-MPTLLLIGEKDNTAIGKDAAPAATLVEFPDGHTPQIQAERFHQALLEGLQTQP 335
17 -24.800TM1046 TM1046 282913 Purified-2001-10-30  ali follow..  14  27...................................................................................................................................................................................................................................................................PEKIERNLIFLHGIGGNIPYLLWFGEKFREYNIKTWFLILPYHEKRAPE-DEAVQDVIDLVDVVKRD-NDKPISLMGFSFGGMITTIALAR-----EKRIEKGVICCSGGDWRWINWYSPYTERLREFYDPASFAPFVD-QKVLFFWALFDHVIPYQSYAKNKKTVYLPSGHKGSYFFRYIAKRVVRFLID.. 283
18 -24.600GS13637A YP_001087340.1 384041 Purified-2010-09-29  ali follow..  15  74...............................................................................................................................................................................................................................................SELMIQSSNNYKLESLFITSNIKTRDTMILVHGIGSSYYEMLKVAYRYLDKGYNVLVYNQRNTGNSGGDNYTFGYDLDSLVKFVKNKFPEGRLGVHGFSMGAGTAAMHSESKDDKVDFYILDSPYSEMKDAIRMGVLEKRISGFWYSDVKPYESVEKSN-VPILFIHGTKDTVCNYQNSHDKKDLWLIEGIGHFEHDSTVYFNKIFKFIDS.. 319
19 -24.100MA6031A NP_035974.1 400170 Cloned-2009-02-26  ali follow..  16  24.....................................................................................................................................................................................................................................................NADGQYLFCRYWKPSGTPKALIFVSHGAGEHCGRYDELAHMLKGLDMLVFAHDHVGHGQSEGERQVFVRDVLQHVDTIQKDYPDVPIFLLGHSMGGAISILVAAERPTY----FSGMVLISPLVLANPESASTLKVLAAKLLNFVLPNMTLGRTLPFLLLQGSADRLCLMESSRSQDKTLKMYEGHVLHRELPEVTNSVLHEVGCPP 303
20 -24.000FN4107C YP_546482.1 379496 Diffraction|HSQC-2007-11-01  ali follow..  16  1........................................................................................................................................................................................................................................MSVLKGSQNVTICNANGLKLAARLELPDIPPRGMAMIAPAFGCTKEIASRTARRLLQYGIGSLRLDFTGIGQSEGDFSMTNEDFVSAADWLRQHVAA-PNILIGHSFGGLVALNACHSIP----ESRACVTIATPESPAHVPYVLRRQFADHARQFRLHDTMQRLR-VPVLIMHSPRDEMVPFETARHPKSLLAIEDADHMRPAAEFVASTIGLWGMR.. 254
21 -23.700TM1159 TM1159 283025 Purified-2004-07-19  ali follow..  14  30..............................................................................................................................................................................................................................................DSTYSRAEKGTDPVEVYIFSPKRKKQGSVMILQGLGSQNVLYLIMAHYLSRKGIEAILPVLPGNFTRVAE-EHALTDLLSLLELLKVK-WHERNCLFGYCLGGMIAVLLNA-----LSSDFKKTIIMMAGGDFATLFWKSPTLSFVRRKLDPLAYAKFVDTSRIVMLEAMFDKALPKSTRDGKPKRIKVPSSHV----QVLAARYIMKLLKEQ. 312
22 -23.500FL4049A NP_393672.1 376246 PDB-2007-11-14  ali follow..  11  9.....................................................................................................................................................................................................................................................DVNGTRVFQRKMVTDSNRRS-IALFHGYSFTSMDWDKLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDHAAEFIRDYLKANGVARSVIMGASMGGGMVIMTTLQYP----DIVDGIIAVAPAWVESLKGDMKKI------------------RQKTLLVWGSKDHVVPYASIISGSRLEIVEGSGHYIKKPEEFVRITVDFLRN.. 205
23 -23.500MA3618B NP_056222.1 400304 Purified-2009-05-08  ali follow..  12  87................................................................................................................................................................................................................................................................LPLNQAHRVEVVLLHGKAFNSHTWEQLGQLLSQRGYRAVALDLPGFGNSAPSKEASTAGRAALLERALRDLEVQNAVLVSPSLSGHYALPFLMRGH----HQLHGFVPIAPTSTQNY-----------------TQEQFWAVKTPTLILYGELDHILARESLRPNHSVVKLRNAGHYLHKPQDFHLVLLAFLDHLP 271
24 -23.300SP19076A YP_096351.1 412138 Purified-2010-09-29  ali follow..  16  26.....................................................................................................................................................................................................................................................TVDQKKIILPYWLSRPVSYGAVIIVSGGETWSLLLEQFAKGLARNGWSVVLLNC-----TKNNSIPWINQLPEVISTLRQN-NNKRIVLVHYGDQLNLALEYFSKPQSK---MINGLVMLSAYDLN-----------------RNLQKVPRLR-FPLFDIVGQFDYDMVRQQRKSRELAIDIPGTHDYQYSQQLLLAFVHGWMAK.. 214
25 -23.300TM1350 TM1350 283211 Purified-2001-11-06  ali follow..  13  7.................................................................................................................................................................................................................................................................KHGEDWKGTVVIVHGLGEHSGRYRRLVREFVSEGVQVVTFDLPGHGKSPGRRGHLRDDVFKILNEITKD--LERFVLFGHSLGGLIAIRFTQIFQPE---NQKGLVVSAPATHSPVLEFMVRFLSFFVPFLTMSNGINP--KVPVLIFHGTDDRVVSFEALSTEKKLVSFPGGYHELFEDPEHQKEFFKTIVE.. 250
26 -23.200YDR428C YDR428C 354901 PDB-2004-05-20  ali follow..  14  23.................................................................................................................................................................................................................................................................EISQNTREAVIYIHG-GAWNDPENTIKSMDTESTVCQYSIEYR----EITNPRNL-YDAVSNITRLVKEKGLTNINMVGHSVGATFIWQILAALKDGLLQIVKRVFLLD-VEYPEYDCFTRLAFPDGIQMYEEEPSRVM-FSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLHNDVYKNGKVAKYIFDNI.... 260
27 -23.100MA3618A NP_083907.3 399959 Purified-2009-03-27  ali follow..  10  17........................................................................................................................................................................................................................................................NLFFRETRPGSGQPVRFSVLLLHGIRFSSETWQNLGQRLAEAGYRAVAIDLPGLGRSKEAAAPAPIGPGSFLAAVVDTLELGPPVVISPSLSGMYSLPFLVAPG----SQLRGFVPVAPICTDKINAVDYASVK-----------------TPALIVYGDQDPMGSSSFQHPNHRVLVMEGAGHYLDKPDEWHKGLLDFLQG.. 208
28 -23.100MA3618C NP_116139.1 400163 Cloned-2009-02-26  ali follow..  13.....................................................................................................................................................................................................................................................QVQGQALFFREAPGSGQARFSVLLLHGIRFSSETWQNLGHRLAQAGYRAVAIDLPGLGHSKEAAAPAPLAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAPG----SQLPGFVPVAPICTDKI-----------------NAANYASVKTPALIVYGDQDPMGQTSFEHPNHRVLIMKGAGHYLDKPEEWHTGLLDFLQG.. 208
29 -22.500XB5587A 16412177 358725 Crystal|NMR-2005-07-23  ali follow..  12  21..........................................................................................................................................................................................................................................................................IIMIHGFAPDSQLMIGCMEPVKESSFSRIYLDLPGMGKTENYDSIQNADLTLLLEFIEAVIPGEQFVLAGESYGGYLTRGIAAKMP----DRVLGVLLICPVIYPEKERRTLPEQKVMYQDDTFVQSLSKGDDVPALFLFGRQDDHVGYADGLPHASIAILDFGHNLQIEQPKIFTTMVQDF.... 263
30 -22.000TT4101A NP_435879.1 404204 Selected-2009-08-14  ali follow..  16  61......................................................................................................................................................................................................................................................................EGTPLLSIHGAGGGWDQGLTNVADLVGRGFRVIAPSRFGYLGTPIPADASPSAQADAHVALLSKLEINKTVVVGVSAGARSAIELALRHP----DKVSALVLIVPGTYAPAPSVLIRFLGVPPELVEAAPPLEKIA-APTLVVSAQDDLFNTLPAAIPGAKLVVYDGGHLLVGQGGKVKKVVSDFLAQT. 319
31 -21.900MA8720A XP_904852.1 400472 Cloned-2009-02-26  ali follow..  13  11.....................................................................................................................................................................................................................................................PFGNKLLDAVCLVPNKNIAYGIILTHGASGDMNL-MSLASHLASHGFFCLRFTCKGLNIVHRIKAYKA---VLNYLKTSGEYKLAGVFLGGRSMGSRAAASVMCHTPDDADDFVRGLICIS------YPLHHPK-----QQHKLRDEDLFRIK-DPVLFVSGSADEEKVAQKMQAPSKIHWIEKANH-NDVFKEINTQILFWIQE.. 218
32 -21.900FK9670A YP_322756.1 371453 Purified-2006-11-08  ali follow..  11  4..........................................................................................................................................................................................................................................................................YIYLHGFASSPQSAKAIRQRFAQIHTQLTIPDLNAGEFSQLTITRQIQQIAATFPD-----DSVPITLIGSSLGGLTAAHLGQRYL-----QVQRLVLLAPAEGAVQSWQQNGYYPVYHYSYNFVTDAAQYQPIPTLILHGKHDEVIPITASRD-VELIELDSNHALGNVMEEIWQAISLFCQLPE 213
33 -21.900PL3888B YP_002548124.1 401112 PDB-2010-01-28  ali follow..  11  1....................................................................................................................................................................................................................................MTNVGRPIETHAITVGQGSDARSIAALVRAPAQDERPTCIWLGGYRSDMTGTKEMDDLAASLGVGAIRFDYSGHGASGGA-SRWLEEALAVLDHFKP----EKAILVGSSMGGWIALRLIQELKARHDTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSECPVHILQGMADPDVPYQHALKLVEHLPADGDHRLSQDIDRMRNAIRAMIEPRP 269
34 -21.300SP9087G ZP_02030729.1 412825 Purified-2010-09-29  ali follow..  13  1MKHKALYLYLILFFLLCCSVTTTGQEKKQ-------ERFTL-MGLGDS----ITEGADFFTCYLYPLWEKLFTAGYQFDFIGPRESKCRIGTLNHC--FSGKNVEFLESKIDSLYRLYPADIVLLAGHNH-KSIINKIQAINPNVRILIAQVIPSGKLPKYSYIPELNEKIAEMVAGLNSGQVFLVNQAQGFNWQDYTVHDKVHPNKAGAEKMATVWFEALKKVLASSETVFSPEIVRYKTLEDGDSLALHIFKPRNMQAGEKRPAIVYFFGGGGTPIQFYRECAYYASKGMVAVSVDYRIGYLHHSTPFESFEDAKDAICWLRSHADPDKIAVAGGSAGGHLAAALGTIGSDETVPRPNLSVLYYPVIDMVSRGYGFPEIKRDFEKISPIHHVSEATP-STLILLGTKDPIVSVETIEADCELHLFEGAGHLTEEYYKVRKLTDDFLKR.. 479
35 -21.200SP9198B NP_390245.1 406662 Purified-2010-09-29  ali follow..  12  58...............................................................................................................................................................................................................................................TAFVIPSAYGYDIKGYHVAPHDTPN-TIIICHGVTMNVLNSLKYMHLFLDLGWNVLIYDHRRHGQSGGKTTSYGDDLNKVVSLLKNKTNHRLIGIHGESMGAVTALLYAGHCSDGADFYIADCPFACFDEQLAYRLRAEYRLGYRAREVSPLAVIDKIE-KPVLFIHSKDDDYIPYEKKRGPKALYIAENGEHYTKNRHTYRKTVQEFLDN.. 299
36 -21.200MA16068A XP_001480680.1 400273 Cloned-2009-03-24  ali follow..  11  38..................................................................................................................................................................................................................................................................GPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYW----DHLEFCDGFRKLLDHL----QLDKVHLFGASLGGFLAQKFAEYTHKS--PRVHSLILCNAFSDTSMMADAIDFMVDRLESLGQSELASRLTDIPVTIMDVFDQSALSMYKLYPNARRAHLKTGGNF-CRSAEVNLYVQIHLLQ.. 275
37 -21.100MA4101D NP_071864.1 400049 Selected-2008-12-22  ali follow..  12  1......................................................................MTSEHTMLTGV-----------TDGFFCCLLGTPPNAVRPLESVESSDGYTFVEV---KPGRVLRVKHAGPAPIPTPPPPPPED-DPGVKTGLVRC---QRRITVYRNGRLVV---------ENLGRAPRADLQGRSGSGDPPAALEVELAEPAGGDTRANPGSGRRRRPRRPKRTIHIDCEQRITSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQYALAEDMRAIFTRY----AKKRNVLIGHSYGVSFCTFLAHEYP----DLVHKVIMINGGGPTALEPSLCSIFNMPTCVLHCLSPCLAWSTVPVLLVHGMHDKFVPVEEDQLLAFLKLIEEGSHMLECPETVNTLLHEFLLWEP 412
38 -21.000GS9198I NP_267730.1 384132 Selected-2007-09-11  ali follow..  16  79..................................................................................................................................................................................................................................................TSSDKLKLKLYAADYKQPTKTNKWAIVVHGYGGQSIDMASWTRHFYNKGYNVVTPDLRGHGKSQGDYIGMGKDMLLWIAKIIQKGPQAEIVLLGVSMGGATVMNTSGELPSNVKAIVEDCGFTSTVDVFAYQLKQLYGLGYDIFKSSAIKQVAK-SKTPILFIHGDKDTFVPYDAAKVEKEKLIVHGAGHEKVNPDLYWSHVWDFVGK.. 317
39 -20.900SP9198C ZP_02994114.1 410425 Purified-2010-09-29  ali follow..  13  59...............................................................................................................................................................................................................................................QEITIKSPFGYDLKGMYFPGKNSKK-TVIICHGIKCNLYNSVKYMKIFMDKGFNGVIYDHRNHGSSGGENTTFGQDLEAVADWVFERNGQDIVGIHGESMGAGTILQNAA-IDDRIAFYVADCPYSSMKDILQLRLKEDYKLGLFFSQVSPIKDIEKVE-TPILFIHGMEDKYIPKEMSIDVKDIYLAPNADHYMKNKEEYKERIYKFLEK.. 299
40 -20.800MA16068B NP_057714.1 400313 Cloned-2009-02-26  ali follow..  11  34..............................................................................................................................................................................................................................................................LYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYW----DHLEFCDGFRKLLDHL----QLDKVHLFGASLGGFLAQKFAEYTHKS--PRVHSLILCNSFSDTS-MADAIDFMVDRLESLGQSELASRLTDIPVTIMDVFDQSALSMYKLYPNARRAHLKTGGNF-CRSAEVNLYVQIHLLQ.. 275
41 -20.700GS9198H NP_266277.1 384112 Selected-2007-09-11  ali follow..  19  70.....................................................................................................................................................................................................................................................KNDGLKLDAWYVPAEHKTNNTVIVVHGFRQDKSAMRQYGQLFHELGYNVLMPDNRGAGQSEGKFITFGFDVIAWANYLTDKNPESQISLYGLSMGASTVMMASSELPSSVKNIIEDCGYTNAWDEITYQAKESYNIGWFFQEASATKALTK-DKLPILLIHGSNDTYVPTSMVGTPKELLVIKGAAHFETNPELYRQTISKFMKA-P 311
42 -20.600FN1022A YP_495972.1 379624 Purified-2007-10-10  ali follow..  14  24...................................................................................................................................................................................................................................................................GNADKPPLLLVHGGRDHCRSWDWTAEALRE-DWHIIALDHRGHGDSQWTQDDLVYDVAQLIHQL----DLAPVTIVSHSWGANTSLRYAGLFP----ENVRKIVAIALMKDVPFARRVREFIVEKRKAAGRLPELWGAITCPTLLLNGADPDRNGMAQHFRNAQVVEFENGHWLHHDQDRFIATLRDFL.... 290
43 -20.600MA4101C NP_078803.4 400034 Purified-2009-03-27  ali follow..  11  3............................................TGVTDGIFCCLLGTPPNAVGPLESVESSD-GYTFVEVKPGRVLR---------------VKHAGPAPAAAPPPPSSASSDAAQGDLSGLV----CQRRITVYRNGRLLVE----------------------------------LGRAPRADLLHGQNGSGEPPAALEVELADPAGSDGRLAPGSAGSGSGSGSGGRRRRARRPKRTIHIITSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQYALAEDMRAIFKRY----AKKRNVLIGHSYGVSFCTFLAHEYP----DLVHKVIMINGGGPTALEPSFCSIFNMPTCVLHCLSPCLAWSTVPVLLVHGMHDKFVPVEEDQRMAEILLIDEGSHMLECPETVNTLLHEFLLWEP 420
44 -20.500MA4101E NP_080455.1 400096 Purified-2009-03-13  ali follow..  14  1...........................................................................................................................................................................................MKAMAAEEEVDSADAGGGSGWLTGWLPTWCPTSTSHLKEAEEKMLKCVPCTYKKEPVRISNGNRIWTLMFSHNISSKTPLVLLHGFGGGLGLWALNFEDLST-DRPVYAFDLLGFGRSSRPREEVENQFVESIEEWRCALRLDKMILLGHNLGGFLAAAYSLKYP----SRVSHLILVEPWQTPSGETAFKNMTIPYGAKRPMLQRIGGLHDIPVSVIFGARSTSIQSLRPKSYVKTIAILGGHYYADQPEEFNQKVKEICHTV. 350
45 -20.300GS9198E YP_794658.1 384011 Purified-2010-09-29  ali follow..  18  66...............................................................................................................................................................................................................................................VEWTQMTADGLCLRASWLAAKQPTTKVVILAHGLGHAREQMIPWARVFHDWGYAVLMPDARAHGESDGHTIGYGHDYQGWITQVIDQNGADQIVLLGISMGAATVMATAGELPTNVKAIIADSGYASVLGEARYRMWYSRWGDYRLADGDIAGQLKK-SQIPLLLIHGAKDTTVPYQAAAGPKQKYCDPNAEHRDADPVKYDQLVADFLST.. 307
46 -20.100FN5895F YP_052047.1 379337 Purified-2007-09-27  ali follow..  11  22......................................................................................................................................................................................................................................................................QGPALVLIHGTPFSSQVWRRIAPLLSSH-WTVYYYDMVGYGQSHKSAGQSLGGQDRLLAALLKEWKLTRPDILCHDFGGATALRGYFLQG----LRYASLTLFDAVAISPWEEALNIYMSPWQGEVGQAAFYRQIADCPVNMLWGEQDEWIPLEVGKGDAPLQIVKNGHLVQEDAPAIVQSMYSLLLKRA 273
47 -20.100SP4101C ZP_02433111.1 410316 Selected-2009-11-12  ali follow..  13  58..............................................................................................................................................................................................................................................................INYGEVENDKPPLLLIHGQMGIWEDYALVMPELGKK-WHIYAVDVYGHGESSHDEGVNGDDLIWFINNV----IGKPTVVAGYSNGAITAAYVAAYGG----GNIAGVVLEDPP.................................................................................... 167
48 -20.100SP9198D NP_815226.1 410776 Purified-2010-09-29  ali follow..  17  85...................................................................................................................................................................................................................................................LKIKDETLYARCFIPYPDNHR-WAICVHGRSNGKRDMAYTALRFAEEGYNVLVPDLRAHGKSSGNKIGMGLDLLSWLSEVLAIDMEAEIILVGGSMGAATVMMASGELPTNVRGLIVDCGYTSVYDEFKYVLHESFHLGFQLKTASSVRQLHK-NTLPTFFIHGTGDRFVPLAATQGIKKGLIVAKAPHSVYEPENYYSSIFEFLEE.. 322
49 -20.000SP0336B YP_001301641.1 412466 Purified-2010-09-29  ali follow..  16  43.............................................................................................................................................................................................................................................................KMVTPNQESGYPVVLIIPGSGGKNNSLRYLAEGLAGKGIASLRYDKRGIASSASA-EDGIKDARGWIDYLSKDKRISGIYVLGHSEGALVGMAASVD-----NPKVKGYISVAGAGRPAYEIIEEQMAGQPEVTYNPQEIIKKLK-VPVLILQGDKDDAELLKRSQPSADYHLIGNMNHYTDPALPLHKDVLILIEKKP 321
50 -20.000MA4101B NP_071343.2 400012 Purified-2009-03-27  ali follow..  14  56...........................................................................................................................................................................................................................................................IWTVTVSPEQNDRTPLVMVHGFGGGVGLWILNMDSLSA-RRTLHTFDLLGFGRSSRPAEGAEDEFVTSIETWRETMGIPSMILLGHSLGGFLATSYSIKYP----DRVKHLILVDPWGFPLRPTNPSEIRAPPAWVKAVASVLGRSNDVPITMIYGSDTKKVKMQRPDSYVRDMEIKGSHHYADQPHIFNAVVEEICDSV. 341
51 -19.900GS9198F YP_796199.1 384021 Purified-2010-09-29  ali follow..  12  73...................................................................................................................................................................................................................................................KAAGASLKLVADYVPAAHDTKKTVVLVHGFGSSKEAMGGYVAMFHRLGYNTLTPDTRGQGQSQGKVISYGRDYLKWVKQVIAKQGPQQVVLFGVSMGGATTMMTSGLTPSQLKAYVEDCGYTDAQAEITYQAKQMYHLGFYFKDANAVAAVKK-NHKPMLFIHGGADSFVPYRADAGPKQLLVVPGAQHLSHAPQRYTQTVKAFLAK.. 311
52 -19.800GS9198J NP_815254.1 384136 Purified-2008-01-22  ali follow..  19  64...............................................................................................................................................................................................................................................QEWSITSEDGLRLKAIYLPADKKSNRTVIMAHGYMGSAETMSVFAKMYHDWGYNVLAPDARGHGKSQGDYIGFGKDYVQWIEKVLTENGQQQITLYGVSMGAATVMMTSGELPDNVKAIVEDCGYSTVNQELQYQLKELFNLGYFFGEASAVKQLQK-NHLPMLFIHGENDTFVPYNATQGPKEKYVVPGAEHYNKNPEKYKETVAAFLDK.. 306
53 -19.800MA4101A 17028429 399998 Selected-2008-12-22  ali follow..  14  56...........................................................................................................................................................................................................................................................IWTVTVSPEQKDRTPLVMVHGFGGGVGLWILNMDSLSA-RRTLHTFDLLGFGRSSRPTEGAEDEFVASIETWRETMGIPTMILLGHSLGGFLATSYSIKYP----ERVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNDVPITMIYGANTKKVKMQRPDSYVRDMEIEGSHHYADQPHIFNAVVEEICNSV. 341
54 -19.700GS9198B YP_535951.1 384307 Selected-2007-09-11  ali follow..  14  71....................................................................................................................................................................................................................................................SATDNLKLRAIYLPAENKTNKTIIVAHGYKGEAMHMARYIRLFHNLGYNVLAPDDRASGQSQGKYITFGLDYMKWIKQVIAKKGSDQIGLFGVSMGGATVMMVSGELPKQVKAIVEDCGYSSIESELSEQLKQQFNLGYDFGKGSSTKQLEK-NKLPIFFIHGDSDTFVPYKATSAPKKLWVTKNTGHYNNHPKEYQKRVNEFFNK.. 308
55 -19.600MA16072B NP_079617.2 400038 Purified-2009-03-27  ali follow..  13  62..............................................................................................................................................................................................................................................................YSFRGRPGHKPSILMLHGFSAHKDMWLSVVKFLPKN-LHLVCVDMPGHEGTTRSSVGQVKRIHQFVECL--KLNKKPFHLIGTSMGGHVAGVYAAYYP----SDVCSLSLVCPAPHNSFYRKLFLEIVNEKSRYSLHENMDKIK-VPTQIIWGKQDQVLDVSGADSNSQVEVLENGHSVVMERPKTAKLIVDFLASV. 327
56 -19.600MA16072A NP_065727.3 400299 Cloned-2009-02-26  ali follow..  14  62..............................................................................................................................................................................................................................................................YSFRGRPGHKPSILMLHGFSAHKDMWLSVVKFLPKN-LHLVCVDMPGHEGTTRSSDGQVKRIHQFVECL--KLNKKPFHLVGTSMGGQVAGVYAAYYP----SDVSSLCLVCPAPHNNFYRKLFLEIVSEKSRYSLHQNMDKIK-VPTQIIWGKQDQVLDVSGADANCQVELLENGHSVVMERPKTAKLIIDFLASV. 327
57 -19.600FN9059A YP_544121.1 379495 Crystal|NMR-2007-10-19  ali follow..  12  47................................................................................................................................................................................................................................................................APIAGGQHPLILVSHGSGGSHLLYRTMTAHLAQHGYVVAMIEHPGNNRVDNQFMGKVEHLRLTADALYGHLQAGRIGVIGHSMGGYTALALAGGTPWYPPDRVKALVLLAPATVWFMP----------------EHALEDVD-VPILMLSAEHDPYTPAWHDPANVTSRCVKNAGHFS.................. 249
58 -19.600FL11149A YP_169019.1 375939 Purified-2007-06-12  ali follow..  13  35....................................................................................................................................................................................................................................................................GQSGPALVLIPGTLGRADIFWQQIAALSG-EARILAVSYPASG----GISDWAADLAQIISDA----EMQGATILGSSLGGYLAQYLTATEP----ALCGGLVAANTLASVRFEAGLASWQAPDHPYSDLARLLLQLPRDRMFTVESDDDHLISLRAALTPARAYRFRATSHF-TRPDAYTALLREVLGLT. 271
59 -19.600SP18975A NP_251639.1 413212 Selected-2009-11-12  ali follow..  16  56.................................................................................................................................................................................................................................................................EGGSEKNPTLLLIHGFGADKDNWLRFARPLTER-YHVVALDLPGFGDSSKPQQADVGTQAERVANFAAAIGVRRLHLAGNSMGGHIAALYAARHP----EQVLSLALIDNAAVAASAFNAQIFEQLRQRYIPLEPELPKIE-APTLLLWGDRDRVLDVSSIEKRPSVVIMENGHVPMVERPETAQHYQAFLDGV. 307
60 -19.400SP0336A ZP_03457609.1 407356 Purified-2014-05-19  ali follow..  14  43.............................................................................................................................................................................................................................................................KLLLPAHAKSCHVVVLIAGSGMKNNSLKFLAEGLALKGIASLRFDKRGIASSASRLEDYVNDVTGWIDLLAKDKRFTGITVAGHSEGSLIGMLTCRK-----RPEVKGFISIAGAGSPAYDLIEKQVAAQMTPKYNPQTVIASLK-MPILILQGKKDEAARLKKASPQAELILIDKMNHYNNPSLPVNAALINAIAE.. 316
61 -19.300TM1022 TM1022 282889 Purified-2001-12-12  ali follow..  10  18....................................................................................................................................................................................................................................................................EGGNEGVLFIHGYTGSPHDFEYMAKEVNRAGFTVSVPRLPGHGTCTTTARDWLRRAFDAYYDLKAIC--DRVYVVGLSMGGVIALILASQMN------PPKLVTLAAARKEYWSYNWPKQAAELYKLMKLARKSVSKITSATLVVAAKNDNMVPMKAASEKRKLLVFEKSGHNDVEKEDVTRAVIEWLKG.. 252
62 -19.300SP0336C YP_001299345.1 409704 Purified-2012-10-24  ali follow..  14  42.............................................................................................................................................................................................................................................................KLLLPGGVKTCPVVLIIAGSGLRNNSLKFLAEGLAANGIASLRFDKRGIGTSASA-EDYVNDVTGWIDYLAKEKRFTTITVAGHSEGALIGMLACQN-----RPKVKGYISVAGAGRPAYEIIEAQVAAQQNPEYNPRTVIASVK-VPVLIVQGKNDDAELLKKGCPAAELLLIDKMNHYGNPSLPVNSTLIASVST.. 317
63 -19.200GS9198A YP_210532.1 384268 Purified-2010-04-01  ali follow..  12  70...............................................................................................................................................................................................................................................RDTFVLNPEGIRLHAYYIAAPQPTKKTAVIVHGYTDNAIRMFMIGYLYHDLQYNVLLPDLQHQGESGGPAIQMGLDVMQWMHIANQIYGDSQMVVHGISMGGATTMMVSGEQPYFVKCFVEDCGYTSVWDEFSHELKSSFHLGWNFEEASSLNQVKK-SHLPMFFIHGDKDTYVPYEAKSAPKQLWIVPGAAHYKENKEEYTRKVKEFTDR.. 313
64 -19.100GS9198D YP_001299819.1 384010 Purified-2008-05-02  ali follow..  11  70...............................................................................................................................................................................................................................................KDTFIYSPDHVKLHAYYVASSRPTAKTAVIVHGYTDNAIRMMMIGYLYKKLDFNILLPDLRDTGLSGGNAIQMGKDVTQWMEVANRIYGDSSMVVHGISMGAATTMMVSGEQPDYVKCFVEDCGYTSVWDQFSKELKAQFGLGWGFKEASALKQVAR-CHLPMFFIHGDKDDYVPYEAKPQPKALWIVPEADHYLFNTEEYTQKVKAFVDK.. 313
65 -19.100SP9198A ZP_03458143.1 407363 Purified-2010-09-29  ali follow..  12  70...............................................................................................................................................................................................................................................RDTFIINRKGRQLHAMFASAAKPTDKTAVIVHGYTDNAIRMLMIGYLYNDLNYNILLPDLQDNGLSEGPAIQMGLDVLNWMNIANDIFGKRQMVVHGISMGAATTMMVSGEQQPFVKCFVEDCGYTSVWDEFSFQLKDMFGLGWNFQEASSLEQVKK-CSLPMFFIHGDADTYVPYEAKSEPKELWIVPGATHYKDYPQEYTERVKKFVGK.. 313
66 -18.900GS9198C YP_794427.1 384007 Selected-2007-09-11  ali follow..  15  75.........................................................................................................................................................................................................................................................NRMVAEYIPAATPSQQTVIISHGYKGNGETMANFAQMYHHLGFNVLLPDDRGHGESAGEYISFGLDYLQWIQQVIDRSTADNILLFGVSMGGATMEMLSGELPPQVKAIIADCGYSSIEAELTYLLKRQFHLGYYLGDVTSTDQLRK-NTRPILFIHGEKDVYVPYAATHAPKQLWIVKNASHFWMNPERYQQRVTAFLQT.. 307
67 -18.700GS13146A YP_001303549.1 384285 Purified-2008-06-17  ali follow..  15  48.........................................................................................................................................................................................................................................................LDKYELPSISPASKKPVMIFAFGGGGDKA-YIPYFEFLARNGFVVVSTDYR---ALQHAIDTAVEDFYDATGFVINQSSDEQIVASGSSAGAITVLQAEYDLCNGHEL----------AKRLPAGFNYAGVISYAGAVSGVLPPHWEKMPCPIMLFHGDADKTVPFEQAAASYYFYKVENAGH---PMSRNQYDIMSFLSR.. 287
68 -18.700GS9198K YP_193540.1 384186 Purified-2010-09-29  ali follow..  13  65.....................................................................................................................................................................................................................................................NTNNLTLCAQYLDHHSNK--TVILLHGFMSDSDSMGGFAKMFYDFGYNVLLPDARAQGKSEGQYIGYGEDIAKWINEIIQKNGADKIVIMGQSMGGATIMMVSGMLPKQVKAFIEDCGYSNVKEEIKYQAGNLFSIGFFLGKASSANQLSK-NNRPFLFIHGGKDHFVPYQASNGPKEIWIAPLAGHYPMYKTEYRKQIKAFLDK.. 302
69 -18.600TM1160 TM1160 283026 Purified-2004-07-19  ali follow..  13  65........................................................................................................................................................................................................................................................SLKMDVYYPSVKRESYPFVLFAHG-GGWISGYRRWYRFLNANGFAVATFDYR-YGYFHYIEDIL-EDLKSAISFLNEHLLIKNLNLMGLSAGGHLVLYHAMR-KEGEKDFDGNVVWYAPCDLLDLATTLKGFPVRKKEDYVFYSPVAWVNPKSTMLVHGMKDDVVPLRENGVEAKLRLHPEGKH-DSLTVKFLYETVSFLKR.. 306
70 -18.600TT3691B YP_399044.1 404330 Selected-2009-08-14  ali follow..  41CLTRLLWSSGFAFGLWGAIALPSRPAETLRVSWAPVSVLENFQRTGRFDRGFGFLNVLVPEATLKEARTALSAR-LPLSPEVLRPVLTNTDTLEI--------LQQIGSLIRPQPGESGAAALLTASEQPQGLTLIGLIKAFPGPLMQLDLDTGLKLFQRIRALEAETGAMLRAIAAQMQEQPSLPSRNFRPAQRGPYTVRQQNWDWVDSDRTR----------------------------------RVPTTIYWPDRQGLSLPVVIISHGLGEDRGNFAYLAQFLASHGFVVVLPEHVGSSSRQFAS-DRPQDIRFVLDRLMLRVNTRRVAVLGHSYGGFTALMLAGAVIEPEKPRVVAVLPISPFASKVFE-----------------AALNQVQ-TPTLLWSGSADLIVPTLAGSPNKHLVVAVNATHFS.................. 489
71 -18.500FL10866A NP_343859.1 375699 PDB-2007-09-17  ali follow..  15  37...........................................................................................................................................................................................................................................................ISLHKVNLIGGGNDAVLILPGTWSSGDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRWISDIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKN---DIKGLILLDGGPTKH---KKEDMFPILASFDPYWPYRLSLERVPTIAFVSERFGIQIFDSLPSNSEIILLKGYGHLDNSEKDVNSVVLKWLSQ.. 351
72 -18.500TT1160A YP_399470.1 404618 Selected-2009-08-14  ali follow..  12  2...........................................................................................................................................................................................................................................................LTARHRPAIAPAAGQVVLLHGFGANAEDLLGLDAEFARPDLDLWSVEAP-YQTDWPGLSEAIAALKAWLLALPAQTQLSSTLLLGFSQGAAMTLEMGALLP------VKGLMICSGY-------------------WHPSLEWPKALTPTAIVTHGTIDPVVPFAAGEEIHQRLQAAGGHWIDRPIAALRDFLNQQLPPHT 204
73 -18.400SP0336D NP_250371.1 413210 Selected-2009-11-12  ali follow..  17  44.............................................................................................................................................................................................................................................................SLLLPRSAVPPPVVLLVAGSGGNNRYLLRLAEALAERGIASVRYDKRGVARSLAA-GVYVDDVVAWSERLARDPRFSRLILVGHSEGALIASLAAP------RTPAEELIAIAGSGQPIDRVLREQLRGRLPPREDPARAFGRLR-IPTLIVQGRNDDAEALQRAKPDSQLVLIDGMNHYNDPNLPLARQLVEAVSR.. 315
74 -18.400GS9198L YP_193629.1 384191 Purified-2010-04-06  ali follow..  73...................................................................................................................................................................................................................................................KSASSNYCLDANYIPKKNSHK-TAVLLHGFMNNKDTMAPYAAMFHQLGYNVLIPDARAHGKSQGKYIGYGYDVQKWVKKDIAEKGKKKIVIFGVSMGGATTMMTSGLMPKQVKAYIEDCGYTDVKSEFLYEAKDIYKMGFYLGDASAVNQLKK-NKLPMMFIHGSKDNFVPYKATNGPKELWIAEKAAHFETYPREYKARVSKFLNK.. 313
75 -18.300SP13146A ZP_02069317.1 409295 Purified-2010-09-29  ali follow..  14  51................................................................................................................................................................................................................................................................QIQGTQSKPVILFAFGGGGRRD-YISYFHFWARAGYVVVSTDYRTQLKDIDKSECAVEDFGDATNYIIEHSNPAQIIACGSSAGAITALQAEYEICNQT----------AFADRLPANFNYAGVISFSGVICANGIPKWIMSPCPLMLFHGDADSTVPFTKAVVAYYFYIAEGIGH-YSPMKDNRHDILSFLNR.. 282

FFAS is supported by the NIH grant R01-GM087218-01
8 5 9 5 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.