current user: public




2011.Jan.03.22504.0
Query: PF00083.17; STP1_ARATH/26-489; Sugar (and other) transporter (submitted on 2011.Jan.03, from 10.1.46.41, by public)

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWLast
1 -25.200d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  55..................................................GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL--FLLGMAWFNDWHAALYMPAFCAILVAL-FAMMRDTPQ----------------SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWDGFMVMIGGSILAVILLIVVMIGEK........... 435
2 -18.300d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  35..............................................HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL---FFAKTDAPS-------------------------SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL-NMYESIGFQAYLVLGLVALGFTLISVFTLSGPGPLSLLR..... 410
3 -6.290d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1.................................................................................................GSSGSSGQAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQ................................................................................................................................................................................................................................................................................................................ 63
4 -5.530d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  3....................................................................................................................LTSFSMEDDPQPVLLDSISVKPNTI--LLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRF---PLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQ................................................................................................................................................................................................................... 135
5 -5.340d1nsla_ d.108.1.1 (A:) Probable acetyltransferase YdaF {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  1................................................................................................................................................................................................GMFTCKVNEHITIRLLEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETIIPDWRRQYADLNGIEAGLLYDGSLCGM-EIGYWIAKEFEGKGIITAARKLITYAFEELELVGNEKSRAVPERIGRDGLYVNGMHHDLVYYSLLK........................................................................................................................... 177
6 -5.180d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  3....................................................................................................................................................................................................LPESPKYLARKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEM...................................................................................................................................................................................................................... 70
7 -5.000d2fcka1 d.108.1.1 (A:1-178) Putative ribosomal-protein-serine acetyltransferase VC1889 {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  13  8......................................................................................................................................................................................................VTQRLQLRLITADEAEELVQCIRQSQTLHQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGMVAINEFYHTFNMASLGYWIGDRYQRQGYGKEATALILFCFERLELPENVPSQALALRCGPNRFLYAGEPKAGIVFSLI............................................................................................................................ 177
8 -4.880d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors follow..  11...........................................................................................................................................................................................................LKEEDLIAGGEHVLCAYIMKPKAGYGYVATAAHFAAESST-GTNVEVCTTDDFTRGVDALVYEVDEARELTKIAYPVALFDRNITDGKAMIASFLTLTMGNNQGMGDVEYAKMHD.................................................................................................................................................. 124
9 -4.560d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein BLES03 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  31.............................................................................................................................ATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLMHLAPGFKLDHAWAGIARA-VVEGRLQVAKVSPRAKEGGRQVI--VYTDDFTDRLGVLEADSAIRAA-GIKCLLTYKPDVYTYLGIYRANRLCPTLYESRFQLGGSARGSRVLDRANNVEL........................................................................................................................................... 234
10 -4.560d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}  ali model 3D-neighbors follow..  13  21.............................................................PVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVSVGDSVDI-------------YFGRRITATVTEDPLYDPK---TRLRG................................................................................................................................................................................................................................................................................................................................. 88

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.