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Query: PE00025C YP_807469.1 368040 PDB-2006-09-01, from JCSG1214

Results of FFAS03 search in PDB1214
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MGSLAEWYQRIPTPDDLTRVESLFANMQAQFPQLKLEFKWNQPMFTDHGTFIMGFNPSKKHLAVAIEPQTMTRFIPQIDKAGYDHSQIIRFPWHKPLDEQLIHDLIAYTIDQKKDATTFWQRLast
1 -74.8002i8d_A mol:protein length:123 Uncharacterized conserved protein of COG5646  ali model follow..  100  2MGSLAEWYQRIPTPDDLTRVESLFANMQAQFPQLKLEFKWNQPMFTDHGTFIMGFNPSKKHLAVAIEPQTMTRFIPQIDKAGYDHSQIIRFPWHKPLDEQLIHDLIAYTIDQKKDATTFWQR 123
2 -69.8002oc6_A mol:protein length:124 YdhG protein  ali model follow..  41  2MDVFSEYLAGIADPFHRERTEEVLTWIKNKYPNLHTEIKWNQPMFTDHGTFIIGFSVSKKHLAVAPEKVTIAHVEDDIKAGYDYTEQLIRIPWNGPVDYTLLEKMIEFNILDKADCSTFWRK 124
3 -62.0002kl4_A mol:protein length:118 BH2032 protein  ali model follow..  35  4MEVFAEYLKGIDHPDHRDRTEEILSWVAATFPNLEPQMKWNTPMFSNQGTFIIGFSTSKHHLSVSPEEIGISQFADAIQAGYSATKGLFRIPWNDPVHYELLKQMIEFNIQDKE........ 118
4 -6.0004jpb_W mol:protein length:151 Chemotaxis protein CheW  ali model follow..  34IEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKILGISFDEQKMKSIIVARTKDVEVGFLV---------DRVLGVLRITENQLDLTNVSDKFGKKSKGLVK............... 131
5 -5.8902jkr_I mol:protein length:142 AP-2 COMPLEX SUBUNIT SIGMA-1  ali model follow..  16...LAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQ 134
6 -5.7803u2m_A mol:protein length:115 FAD-linked sulfhydryl oxidase ALR  ali model follow..  17  20LHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPDLRKRLARNHPDTRTRAAFTQWLCHLHNEVN........................................................... 88
7 -5.7704e0h_A mol:protein length:106 Mitochondrial FAD-linked sulfhydryl oxidase E  ali model follow..  12  15LHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPDFEKYIRENAPQVESREELGRWMCEAHNKVN........................................................... 83
8 -5.7303u5s_A mol:protein length:126 FAD-linked sulfhydryl oxidase ALR  ali model follow..  17  31LHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPDLRKRLARNHPDTRTRAAFTQWLXHLHNEVN........................................................... 99
9 -5.7202fio_A mol:protein length:123 Late genes activator  ali model follow..  11  1...............................PKTQRGIYHNLEYVASNTDVTFFFSSELY----------LNKFLDGYQEYRKKFNKKIERVAVTPWNMDMLADITFYSEVEKR........ 76
10 -5.6801k0s_A mol:protein length:151 CHEMOTAXIS PROTEIN CHEW  ali model follow..  30IEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKILGISFDEQKMKSIIVARTKDVEVGFLV---------DRVLGVLRITENQLDLTNVSDKFGKKSKGLVK............... 127

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Doukhanina EV, Chen S, van der Zalm E, Godzik A, Reed J, Dickman MB. Identification and functional characterization of the BAG protein family inArabidopsis thaliana. Biol Chem. 2006 Jul 7;281(27):18793-801. Epub 2006 Apr 24.