FFAS03 result: JCSG0610 vs. PDB0610
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Query: PT05936A YP_001006878.1 378382 Purified-2007-08-22
Psi-Blast: psi-nr85  ncbi     FFAS03 vs.COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron 
FFAS03 scores below -9.5 usually mean significant similarity (less than 3% of false positives)
This master-slave alignment does not show gaps in the query sequence.
Please, use ali links, to see full alignments between query and template sequences.
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# Score Template More... Result vs. %idFirst MRTNKVVWSEGLFLRPQLFQQQERYLEYYAHKRAATITPFFWGFAQYEIDREALSYGKLVLRSGKGVLPDGTPFDIPGHAELPEPLTITPDHLGKLIYLAVPLRLDNSDETIFDEYDMSSLARFYAYEADLSDTNAIRQGPKPVQLSRLRLKLVSESEMTESWIGLPLAKVRAIQPDGSVLLHLEDYIPPVTGYAASSLLSEWLTHLNGLVKMRADMLAKRLSNSDGKASASAEIVDYLLLQIFNKYEPSLDHLRNIPELPPIVLYQELAKFAGELSTFIRTKTRRPRPAPGYDHGKLYPSIRPLVDDVHELLNQILVRAGQMIPLEPKGNGVWSASVLPNELRSFSNLVLAVHAQLPMDVLQHQFSVQTKISAPQQLHELVRSHLPGLELQRLPVPPRQIPYSAGYVYFELMKSGPFWDKVSNAGAIALHVAGDFPALKMELWGIRDSLast
1 -6.640 2oqp_A mol:protein length:134 Interleukin-21  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  7  1.................................................................................................................................................................................................MQGQDRHMIRMRQLIDIVDQLKNYVNDLVPEFLPAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGRRQKHRLTCPSCDSYEKKPPKEFLERFKSLLQKMIHQHLSSR................................................................................................................................. 127
2 -5.760 1vjv_A mol:protein length:415 Ubiquitin carboxyl-terminal hydrolase 6  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  10  21..............................................................................................................................................................................................FKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQN-KSFKSVLPVVLLNTLRKCYPQF-------AERDSQGGFYKQQDAEELFTQLFHSMSIVFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGT---TNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTN.................................. 234
3 -5.670 1n0l_B mol:protein length:138 mature Fimbrial protein PapE  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  10  6VSNTTVDWQD-------EIQTLSQNGNHEKEFTVNMRCPYNLGTMKVTITATNTYNNAILVQNTSNTSSDGLLVYLYNSNA................................................................................................................................................................................................................................................................................................................................................................................ 80
4 -5.440 2fg9_A mol:protein length:178 5-nitroimidazole antibiotic resistance protei  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  12  2..................................................................................................................................................................................................................................................................................................................................................................GSDKIENLYFQGMKTIVIEDKQRIESIILQADACVGITDLEGNPYVVPYENDTLYLHSGPEGGKIEMLQRNNNVCITFSLG.............. 87
5 -5.300 2hti_A mol:protein length:185 BH0577 protein  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  13  11..................................................................................................................................................................................................................................................................................................................................................................................ECKDEKKITEFLNKARTGFLGLSTNDQPYVIPWHNHAIYFHGASEGRKIKMIEANPEVCFTICED.............. 79
6 -5.130 3ih6_A mol:protein length:197 Putative zinc protease  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  11  58.......................................................................................................................................................................................................................................................................RLYHALVPLASGVFGFT-MDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIPTEKP............................................... 197
7 -5.090 3lpe_A mol:protein length:92 Putative transcription antitermination protei  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  16  2..................................................................................................................................................................................................................................................................................................................................................................SRRASVGAHMIFAVRTMVGQEKNIAGLMASRAEKEQLDVYSIASESLK---GYVLVEAETKGDVEELIKGMPRVRGIVPGTIAIEEIE....... 87
8 -5.010 3ewg_A mol:protein length:91 Putative transcription antitermination protei  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  18  3.............................................................................................................................................................................................................................................................................................................................................................................FAVRTMVGQEKNIAGLMASRAEKEQLDVYSIASESLK---GYVLVEAETKGDVEELIKGMPRVRGIVPGTIAIEEIE....... 77
9 -4.960 1jva_A mol:protein length:475 VMA1-DERIVED HOMING ENDONUCLEASE X10SSS  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  10  3.................................................NSDAIIYVGSFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREV---IKLPRGRETMYSVVQKSQHRAHKSDSSREVPELLKFTCNATNELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLW--IGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETF----LAGL----------------------IDSDG----YVTDEHGIKATIKTIHTSVRDGLVSLARS 367
10 -4.810 2w2m_P mol:protein length:114 PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9  psi-nr85 ncbi ali model  COG0610 HUMSAVAR JCSG0610 PDB0610 PfamA240 SCOP175 VFDB b.thetaiotaomicron  10  38..........................................................................................................................................................................................................................................................................................................................................................GTYVVVLKEETHLSQSERTARRLQAQAARRKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS................................... 109


Hot Paper and Paper of the Day:
Hot Paper from Godzik Lab     Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.
Paper of the Day     Alonso A, Rahmouni S, Williams S, van Stipdonk M, Jaroszewski L, Godzik A, Abraham RT, Schoenberger SP, Mustelin T. Tyrosine phosphorylation of VHR phosphatase by ZAP-70. Nat Immunol. 2003 Jan;4(1):44-8. Epub 2002 Nov 25.

FFAS is supported by the NIH grant R01-GM087218-01
2 0 6 5 9 3   jobs submitted since Sep. 25, 2005
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