current user: public




Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2301next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG0865 aap/aspU - Dispersin [Escherichia coli 17-2] (VF0215) 116 SCOP175 1-66 -6.980 16  d2jnaa1 d.230.6.1 (A:1-96) Hypothetical protein STM0082 {Salmonella typhimurium [TaxId: 90371]}
2 VFG2285 (gi:110800384) nanH - sialidase [Clostridium perfringens ATCC 13124] (VF0391) 382 SCOP175 4-381 -82.700 32  d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]}
3 VFG2286 (gi:110801889) cpe - enterotoxin Cpe [Clostridium perfringens SM101] (VF0383) 319 SCOP175 214-318 -7.140 18  d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}
4 VFG1640 (gi:11322959) sfaC - SfaC protein [Escherichia coli 536] 73 SCOP175 1-73 -33.500 90  d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
5 VFG1643 (gi:11322961) sfaD - SfaD protein [Escherichia coli 536] 179 SCOP175 31-178 -56.600 19  d2j2zb1 b.2.3.2 (B:24-173) PAP fimbrial minor pilin protein PapH {Escherichia coli [TaxId: 562]}
6 VFG0772 (gi:11527908) espC - enterotoxin EspC [Escherichia coli E2348/69] (VF0173) 1305 SCOP175 399-989 -13.300 11  d1daba_ b.80.1.7 (A:) Virulence factor P.69 pertactin {Bordetella pertussis [TaxId: 520]}
1016-1305 -37.000 15  d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}
7 VFG0767 (gi:11527909) orf1 - unknown [Escherichia coli E2348/69] 66 SCOP175 17-50 -5.860 17  d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]}
8 VFG0770 (gi:11527910) orf2 - unknown [Escherichia coli E2348/69] 54 SCOP175 16-34 -5.580 31  d1imta2 g.3.10.1 (A:37-80) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
9 VFG0771 (gi:11527911) orf3 - unknown [Escherichia coli E2348/69] 390 SCOP175 163-228 -4.420 16  d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}
10 VFG0773 (gi:11527912) orf5 - unknown [Escherichia coli E2348/69] 57 SCOP175 23-55 -6.480 18  d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}
11 VFG0777 (gi:11527914) orf6.2 - unknown [Escherichia coli E2348/69] 51 SCOP175 1-50 -8.440 12  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
12 VFG0778 (gi:11527915) orf6.3 - unknown [Escherichia coli E2348/69] 46 SCOP175 15-40 -3.600 23  d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
13 VFG0780 (gi:11527916) orf7 - unknown [Escherichia coli E2348/69] 463 SCOP175 2-42 -12.300 14  d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
118-292 -15.300 15  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
120-244 -20.800 16  d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
14 VFG0781 (gi:11527917) orf8 - unknown [Escherichia coli E2348/69] 83 SCOP175 22-73 -5.870 13  d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}
15 VFG0776 (gi:11527918) orf6.1 - unknown [Escherichia coli E2348/69] 80 SCOP175 6-27 -7.000 13  d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
16 VFG0766 (gi:11527918) rorf1 - unknown [Escherichia coli E2348/69] 126 SCOP175 24-116 -12.100 22  d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]}
17 VFG0768 (gi:11527919) rorf2 - unknown [Escherichia coli E2348/69] 56 SCOP175 32-56 -5.260 28  d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
18 VFG0769 (gi:11527920) rorf3 - unknown [Escherichia coli E2348/69] 161 SCOP175 11-161 -6.880 11  d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
19 VFG0774 (gi:11527921) rorf4 - unknown [Escherichia coli E2348/69] 126 SCOP175 19-126 -20.900 12  d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}
20 VFG0775 (gi:11527922) rorf5 - unknown [Escherichia coli E2348/69] 62 SCOP175 1-60 -33.700 31  d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}


FFAS is supported by the NIH grant R01-GM087218-01
6 1 9 8 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.