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Results: 1-20 of 2301next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG0865 aap/aspU - Dispersin [Escherichia coli 17-2] (VF0215) 116 SCOP175 19-56 -7.200 15  d1ly2a1 g.18.1.1 (A:0-66) Complement receptor 2, cr2 {Human (Homo sapiens) [TaxId: 9606]}
2 VFG2285 (gi:110800384) nanH - sialidase [Clostridium perfringens ATCC 13124] (VF0391) 382 SCOP175 4-381 -79.400 33  d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]}
3 VFG2286 (gi:110801889) cpe - enterotoxin Cpe [Clostridium perfringens SM101] (VF0383) 319 SCOP175 214-318 -5.490 17  d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}
4 VFG1640 (gi:11322959) sfaC - SfaC protein [Escherichia coli 536] 73 SCOP175 1-73 -31.900 90  d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
5 VFG1643 (gi:11322961) sfaD - SfaD protein [Escherichia coli 536] 179 SCOP175 31-178 -58.400 18  d2j2zb1 b.2.3.2 (B:24-173) PAP fimbrial minor pilin protein PapH {Escherichia coli [TaxId: 562]}
6 VFG0772 (gi:11527908) espC - enterotoxin EspC [Escherichia coli E2348/69] (VF0173) 1305 SCOP175 79-284 -9.790 16  d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
380-1003 -13.400 13  d1daba_ b.80.1.7 (A:) Virulence factor P.69 pertactin {Bordetella pertussis [TaxId: 520]}
1011-1305 -41.400 15  d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}
7 VFG0767 (gi:11527909) orf1 - unknown [Escherichia coli E2348/69] 66 SCOP175 7-53 -4.800 23  d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]}
8 VFG0770 (gi:11527910) orf2 - unknown [Escherichia coli E2348/69] 54 SCOP175 16-34 -5.450 31  d1imta2 g.3.10.1 (A:37-80) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
9 VFG0771 (gi:11527911) orf3 - unknown [Escherichia coli E2348/69] 390 SCOP175 52-206 -5.500 11  d1k28d1 b.106.1.1 (D:4-200) Baseplate structural protein gp27 {Bacteriophage T4 [TaxId: 10665]}
10 VFG0773 (gi:11527912) orf5 - unknown [Escherichia coli E2348/69] 57 SCOP175 12-51 -4.910 12  d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}
11 VFG0777 (gi:11527914) orf6.2 - unknown [Escherichia coli E2348/69] 51 SCOP175 1-50 -11.000 12  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
12 VFG0778 (gi:11527915) orf6.3 - unknown [Escherichia coli E2348/69] 46 SCOP175 15-40 -4.750 23  d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
13 VFG0780 (gi:11527916) orf7 - unknown [Escherichia coli E2348/69] 463 SCOP175 1-42 -13.500 14  d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
119-292 -18.200 13  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
120-244 -23.700 16  d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
14 VFG0781 (gi:11527917) orf8 - unknown [Escherichia coli E2348/69] 83 SCOP175 16-81 -6.730 d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
15 VFG0776 (gi:11527918) orf6.1 - unknown [Escherichia coli E2348/69] 80 SCOP175 2-33 -11.700 15  d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
16 VFG0766 (gi:11527918) rorf1 - unknown [Escherichia coli E2348/69] 126 SCOP175 24-116 -12.700 22  d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]}
17 VFG0768 (gi:11527919) rorf2 - unknown [Escherichia coli E2348/69] 56 SCOP175 1-53 -6.300 13  d2hqya2 d.108.1.4 (A:1-134) Hypothetical protein BT3689 {Bacteroides thetaiotaomicron [TaxId: 818]}
18 VFG0769 (gi:11527920) rorf3 - unknown [Escherichia coli E2348/69] 161 SCOP175 11-153 -7.270 12  d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
19 VFG0774 (gi:11527921) rorf4 - unknown [Escherichia coli E2348/69] 126 SCOP175 19-118 -17.400 d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}
20 VFG0775 (gi:11527922) rorf5 - unknown [Escherichia coli E2348/69] 62 SCOP175 1-58 -33.400 32  d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.