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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2301next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG0865 aap/aspU - Dispersin [Escherichia coli 17-2] (VF0215) 116 SCOP175 1-65 -7.080 16  d2jnaa1 d.230.6.1 (A:1-96) Hypothetical protein STM0082 {Salmonella typhimurium [TaxId: 90371]}
2 VFG2285 (gi:110800384) nanH - sialidase [Clostridium perfringens ATCC 13124] (VF0391) 382 SCOP175 4-381 -81.600 32  d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]}
3 VFG2286 (gi:110801889) cpe - enterotoxin Cpe [Clostridium perfringens SM101] (VF0383) 319 SCOP175 214-318 -6.980 17  d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}
4 VFG1640 (gi:11322959) sfaC - SfaC protein [Escherichia coli 536] 73 SCOP175 1-73 -36.900 90  d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
5 VFG1643 (gi:11322961) sfaD - SfaD protein [Escherichia coli 536] 179 SCOP175 38-178 -57.500 22  d1pdkb_ b.2.3.2 (B:) PapK pilus subunit {Escherichia coli [TaxId: 562]}
6 VFG0772 (gi:11527908) espC - enterotoxin EspC [Escherichia coli E2348/69] (VF0173) 1305 SCOP175 1012-1305 -33.500 15  d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}
7 VFG0767 (gi:11527909) orf1 - unknown [Escherichia coli E2348/69] 66 SCOP175 7-53 -4.990 23  d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]}
8 VFG0770 (gi:11527910) orf2 - unknown [Escherichia coli E2348/69] 54 SCOP175 16-34 -5.550 31  d1imta2 g.3.10.1 (A:37-80) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
9 VFG0771 (gi:11527911) orf3 - unknown [Escherichia coli E2348/69] 390 SCOP175 163-228 -4.580 16  d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}
10 VFG0773 (gi:11527912) orf5 - unknown [Escherichia coli E2348/69] 57 SCOP175 23-55 -6.310 18  d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}
11 VFG0777 (gi:11527914) orf6.2 - unknown [Escherichia coli E2348/69] 51 SCOP175 1-51 -9.220 12  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
12 VFG0778 (gi:11527915) orf6.3 - unknown [Escherichia coli E2348/69] 46 SCOP175 15-40 -3.720 23  d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
13 VFG0780 (gi:11527916) orf7 - unknown [Escherichia coli E2348/69] 463 SCOP175 2-42 -12.200 14  d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
13-97 -10.200 14  d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
120-244 -22.000 16  d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
125-292 -15.000 14  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
14 VFG0781 (gi:11527917) orf8 - unknown [Escherichia coli E2348/69] 83 SCOP175 6-65 -5.890 20  d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
15 VFG0776 (gi:11527918) orf6.1 - unknown [Escherichia coli E2348/69] 80 SCOP175 6-33 -7.710 17  d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
16 VFG0766 (gi:11527918) rorf1 - unknown [Escherichia coli E2348/69] 126 SCOP175 24-116 -13.200 22  d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]}
17 VFG0768 (gi:11527919) rorf2 - unknown [Escherichia coli E2348/69] 56 SCOP175 4-52 -5.700 24  d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
18 VFG0769 (gi:11527920) rorf3 - unknown [Escherichia coli E2348/69] 161 SCOP175 23-161 -6.950 15  d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
19 VFG0774 (gi:11527921) rorf4 - unknown [Escherichia coli E2348/69] 126 SCOP175 17-126 -17.500 11  d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}
20 VFG0775 (gi:11527922) rorf5 - unknown [Escherichia coli E2348/69] 62 SCOP175 1-60 -33.100 31  d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.