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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 SCOP175 9-39 -5.170 32  d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
2 TM0002 TM0002 281883 Purified-2001-08-29 41 SCOP175 6-40 -4.390 25  d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]}
3 TM0003 TM0003 281884 Purified-2001-12-06 40 SCOP175 8-36 -4.450 37  d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
4 TM0004 TM0004 281885 Purified-2004-07-19 31 SCOP175 10-29 -3.790 25  d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}
5 TM0005 TM0005 281886 Purified-2001-01-30 650 SCOP175 169-610 -13.000 16  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
170-448 -16.900 18  d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 SCOP175 2-124 -47.900 26  d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
126-345 -76.000 37  d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
7 TM0007 TM0007 281888 Purified-2004-07-19 438 SCOP175 177-366 -26.600 16  d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
250-438 -11.200 14  d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 SCOP175 1-224 -80.800 27  d1r61a_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus [TaxId: 1422]}
9 TM0009 TM0009 281890 Purified-2001-02-14 142 SCOP175 2-141 -55.100 32  d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
10 TM0010 TM0010 281891 Purified-2005-03-03 607 SCOP175 6-96 -25.400 31  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
110-349 -87.000 49  d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
351-434 -36.200 44  d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
435-533 -44.900 43  d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
512-598 -39.300 31  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
11 TM0011 TM0011 281892 Purified-2004-02-02 128 SCOP175 1-119 -15.900 16  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
34-125 -41.200 28  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
12 TM0012 TM0012 281893 Purified-2001-08-29 176 SCOP175 18-175 -86.400 27  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
13 TM0013 TM0013 281894 Purified-2001-08-24 253 SCOP175 1-242 -80.600 17  d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
14 TM0014 TM0014 281895 Purified-2001-01-30 278 SCOP175 39-188 -9.130 14  d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
15 TM0015 TM0015 281896 PDB-2007-09-14 192 SCOP175 7-192 -36.800 18  d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
16 TM0016 TM0016 281897 Purified-2001-08-24 101 SCOP175 1-87 -15.300 23  d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}
33-100 -28.400 32  d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
17 TM0017 TM0017 281898 Purified-2003-03-05 394 SCOP175 7-256 -78.000 28  d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
257-393 -46.200 32  d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
18 TM0018 TM0018 281899 Purified-2001-08-24 324 SCOP175 5-322 -70.200 27  d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 SCOP175 1-252 -96.700 40  d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}
20 TM0020 TM0020 281901 Purified-2001-08-24 127 SCOP175 41-124 -5.670 13  d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Osterman A, Overbeek R, Godzik A. Automatic detection of subsystem/pathway variants in genome analysis. Bioinformatics. 2005 Jun 1;21 Suppl 1:i478-i486.