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# Query Length Result vs. Range Score %id Covered by template(s)
1 d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]} 116 COG0113 1-115 -57.100 24  [R] COG2346 Truncated hemoglobins
PDB0113 1-116 -69.100 100  1dlw_A mol:protein length:116 HEMOGLOBIN
PfamA26U 1-115 -60.800 24  PF01152.16; Q7CX73_AGRT5/7-128; Bacterial-like globin
SCOP175 1-115 -65.300 35  d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
2 d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId: 1143]} 123 COG0113 1-123 -58.900 20  [R] COG2346 Truncated hemoglobins
PDB0113 1-123 -70.200 100  1s69_A mol:protein length:124 Cyanoglobin
PfamA26U 2-123 -61.700 20  PF01152.16; Q7CX73_AGRT5/7-128; Bacterial-like globin
SCOP175 1-123 -60.600 17  d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
3 d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]} 127 COG0113 1-127 -59.000 16  [R] COG2346 Truncated hemoglobins
PDB0113 1-127 -67.900 100  1idr_A mol:protein length:136 HEMOGLOBIN HBN
PfamA26U 13-127 -60.300 16  PF01152.16; Q7CX73_AGRT5/7-128; Bacterial-like globin
SCOP175 13-127 -65.300 35  d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
4 d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]} 126 COG0113 1-125 -63.500 32  [R] COG2346 Truncated hemoglobins
PDB0113 1-126 -74.000 100  1ngk_A mol:protein length:128 Hemoglobin-like protein HbO
PfamA26U 2-124 -65.200 32  PF01152.16; Q7CX73_AGRT5/7-128; Bacterial-like globin
SCOP175 1-124 -60.600 17  d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
5 d1ux8a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Bacillus subtilis [TaxId: 1423]} 119 COG0113 1-119 -58.400 41  [R] COG2346 Truncated hemoglobins
PDB0113 1-119 -70.300 100  1ux8_A mol:protein length:132 YJBI PROTEIN
PfamA26U 2-119 -62.500 41  PF01152.16; Q7CX73_AGRT5/7-128; Bacterial-like globin
SCOP175 1-119 -57.000 39  d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
6 d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]} 110 COG0113 5-110 -30.600 13  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-110 -60.100 100  1kr7_A mol:protein length:110 Neural globin
PfamA26U 2-88 -37.000 35  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 2-110 -43.900 16  d2gdma_ a.1.1.2 (A:) Leghemoglobin {Yellow lupin (Lupinus luteus) [TaxId: 3873]}
7 d3sdha_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} 145 COG0113 9-145 -48.800 18  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-145 -65.600 98  3uhb_A mol:protein length:146 Globin-1
PfamA26U 7-144 -14.400 10  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
13-118 -39.700 17  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 8-145 -57.600 22  d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}
8 d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 29163]} 142 COG0113 2-141 -46.200 15  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-142 -66.600 100  1b0b_A mol:protein length:142 HEMOGLOBIN
PfamA26U 1-142 -15.200 10  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
6-114 -40.300 29  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 1-141 -58.800 27  d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}
9 d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]} 147 COG0113 2-146 -41.700 12  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-147 -66.000 100  1h97_A mol:protein length:147 GLOBIN-3
PfamA26U 1-142 -11.300 12  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
6-116 -42.700 13  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 1-146 -57.000 18  d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}
10 d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]} 147 COG0113 2-147 -56.600 18  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-147 -77.900 100  1jf3_A mol:protein length:147 monomer hemoglobin component III
PfamA26U 1-147 -14.400 12  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
6-111 -35.400 17  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 1-147 -62.600 19  d2gdma_ a.1.1.2 (A:) Leghemoglobin {Yellow lupin (Lupinus luteus) [TaxId: 3873]}
11 d1a6ma_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]} 151 COG0113 1-151 -47.500 12  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-151 -71.600 98  4fwx_A mol:protein length:153 Myoglobin
PfamA26U 2-150 -14.300 11  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
6-112 -35.600 21  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 2-151 -66.800 32  d1urva_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}
12 d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]} 146 COG0113 2-146 -51.500 15  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-146 -68.200 100  1mba_A mol:protein length:147 MYOGLOBIN
PfamA26U 1-146 -15.000 11  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
6-113 -44.000 29  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 1-144 -58.800 27  d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 29163]}
13 d1ecda_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]} 136 COG0113 1-135 -40.600 13  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-136 -65.100 100  1eca_A mol:protein length:136 ERYTHROCRUORIN (AQUO MET)
PfamA26U 1-131 -12.400 PF11563.3; Q47S02_THEFY/2-197; Protoglobin
5-105 -45.000 50  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 1-135 -54.800 24  d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}
14 d2gdma_ a.1.1.2 (A:) Leghemoglobin {Yellow lupin (Lupinus luteus) [TaxId: 3873]} 153 COG0113 3-151 -56.600 20  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-153 -78.800 100  1gdi_A mol:protein length:153 LEGHEMOGLOBIN (CARBONMONOXY)
PfamA26U 2-153 -17.400 PF11563.3; Q47S02_THEFY/2-197; Protoglobin
7-115 -40.500 19  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 5-150 -63.300 21  d1q1fa_ a.1.1.2 (A:) Neuroglobin {Mouse (Mus musculus) [TaxId: 10090]}
15 d1cg5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]} 141 COG0113 1-141 -48.700 16  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-141 -68.800 100  1cg5_A mol:protein length:141 PROTEIN (HEMOGLOBIN)
PfamA26U 2-140 -14.000 14  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
6-107 -34.600 19  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 2-141 -65.200 38  d3d1ka1 a.1.1.2 (A:1-142) Hemoglobin, alpha-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
16 d3d1ka1 a.1.1.2 (A:1-142) Hemoglobin, alpha-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} 142 COG0113 2-142 -49.500 15  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-142 -69.200 100  1la6_A mol:protein length:143 Hemoglobin alpha-1 chain
PfamA26U 1-141 -14.600 10  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
6-107 -34.000 15  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 2-142 -65.200 38  d1cg5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
17 d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]} 141 COG0113 3-141 -48.300 13  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-141 -72.700 100  1cg5_B mol:protein length:141 PROTEIN (HEMOGLOBIN)
PfamA26U 1-140 -15.300 10  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
7-106 -36.900 18  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 1-141 -64.100 31  d3d1kb1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
18 d3d1kb1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} 146 COG0113 3-146 -43.900 [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-146 -71.000 100  1la6_B mol:protein length:146 Hemoglobin beta-1/2 chain
PfamA26U 1-145 -12.900 11  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
7-111 -36.100 12  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 3-146 -64.400 21  d1a6ma_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}
19 d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]} 136 COG0113 3-136 -48.200 11  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-136 -68.800 100  1gcv_B mol:protein length:136 HEMOGLOBIN
PfamA26U 1-135 -14.600 11  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
7-101 -32.100 15  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 1-136 -63.200 40  d3d1kb1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
20 d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]} 146 COG0113 11-146 -43.900 11  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 1-146 -71.000 100  1it2_A mol:protein length:146 hemoglobin
PfamA26U 7-146 -13.500 11  PF11563.3; Q47S02_THEFY/2-197; Protoglobin
15-122 -39.000 20  PF00042.17; GLB8_CHITH/9-115; Globin
SCOP175 10-146 -55.300 23  d1urva_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.