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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 13463next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF00001.16; HRH2_CANFA/35-288; 7 transmembrane receptor (rhodopsin family) 254 PfamA26U 1-254 -57.500 12  PF10323.4; Q86DM2_CAEEL/15-294; Serpentine type 7TM GPCR chemoreceptor Srv
2 PF00002.19; GLP1R_RAT/141-398; 7 transmembrane receptor (Secretin family) 258 PfamA26U 1-258 -71.600 12  PF05462.6; CAR4_DICDI/1-309; Slime mold cyclic AMP receptor
3 PF00003.17; Q80Z09_MOUSE/601-839; 7 transmembrane sweet-taste receptor of 3 GCPR 239 PfamA26U 49-237 -8.880 11  PF05297.6; Q89558_EBVG/1-381; Herpesvirus latent membrane protein 1 (LMP1)
4 PF00004.24; LON_BRECH/351-493; ATPase family associated with various cellular activities (AAA) 143 PfamA26U 1-122 -15.900 12  PF00910.17; A7M6L1_9SECO/473-576; RNA helicase
5 PF00005.22; YTFR_ECOLI/49-174; ABC transporter 126 PfamA26U 1-126 -15.300 21  PF09818.4; Q2C6W1_9GAMM/1-438; Predicted ATPase of the ABC class
6 PF00006.20; A0YD60_9GAMM/56-264; ATP synthase alpha/beta family, nucleotide-binding domain 209 PfamA26U 6-197 -9.540 12  PF07088.6; GVPD1_HALSA/23-536; GvpD gas vesicle protein
12-169 -11.900 12  PF13481.1; Q7U700_SYNPX/79-275; AAA domain
7 PF00007.17; GTHB2_FUNHE/24-128; Cystine-knot domain 105 PfamA26U 2-94 -21.600 14  PF05463.6; SOSD1_MOUSE/6-206; Sclerostin (SOST)
8 PF00008.22; LTBP1_RAT/1462-1496; EGF-like domain 35 PfamA26U 8-27 -11.300 45  PF07645.10; Q8WPL1_OIKDI/1687-1732; Calcium-binding EGF domain
9 PF00009.22; EFG_CHLPN/9-286; Elongation factor Tu GTP binding domain 278 PfamA26U 3-174 -13.900 17  PF10662.4; A5ZM04_9FIRM/1-141; Ethanolamine utilisation - propanediol utilisation
10 PF00010.21; BHA15_RAT/73-125; Helix-loop-helix DNA-binding domain 53 PfamA26U 1-53 -5.340 13  PF08589.5; Q0CA90_ASPTN/9-99; Fungal protein of unknown function (DUF1770 topsan)
11 PF00011.16; HSP23_DROME/63-161; Hsp20/alpha crystallin family 99 PfamA26U 1-93 -19.100 14  PF05455.6; O33403_NATVU/1-181; GvpH
12 PF00012.15; HSP77_YEAST/32-633; Hsp70 protein 602 PfamA26U 2-368 -22.400 23  PF06723.8; Q92GC5_RICCN/10-340; MreB/Mbl protein
13 PF00013.24; Q9LQ22_ARATH/211-276; KH domain 66 PfamA26U 10-54 -21.900 31  PF13014.1; B9HEA8_POPTR/415-462; KH domain
14 PF00014.18; O17644_CAEEL/982-1034; Kunitz/Bovine pancreatic trypsin inhibitor domain 53 PfamA26U 30-48 -6.050 26  PF06358.6; Q6B4J7_9VIRU/1-111; Protein of unknown function (DUF1065 topsan)
15 PF00015.16; MCPC_SALTY/323-517; Methyl-accepting chemotaxis protein (MCP) signalling domain 195 PfamA26U 1-175 -63.800 18  PF03532.8; O50963_BORBU/3-255; OMS28 porin
16 PF00016.15; RBL1A_CHRVI/146-454; Ribulose bisphosphate carboxylase large chain, catalytic domain 309 PfamA26U 20-303 -8.770 17  PF01207.12; DUSB_ECOLI/13-321; Dihydrouridine synthase (Dus)
17 PF00017.19; P85B_BOVIN/326-401; SH2 domain 76 PfamA26U 1-74 -7.520 11  PF07528.9; ILF2_DROME/105-345; DZF domain
18 PF00018.23; YKA7_CAEEL/197-244; SH3 domain 48 PfamA26U 2-48 -24.900 17  PF07653.12; Q91VM1_MOUSE/239-294; Variant SH3 domain
19 PF00019.15; DVR1_DANRE/251-355; Transforming growth factor beta like domain 105 PfamA26U 1-105 -14.600 15  PF03045.10; GREM1_MOUSE/67-184; DAN domain
20 PF00020.13; TNR4_RAT/62-102; TNFR/NGFR cysteine-rich region 41 PfamA26U 3-41 -6.160 12  PF04186.8; Q4JVQ6_CORJK/2-119; FxsA cytoplasmic membrane protein


FFAS is supported by the NIH grant R01-GM087218-01
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Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.