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Results: 1-20 of 4372next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 PfamA26U 10-88 -10.600 28  PF11638.3; DNAA_LAWIP/5-67; DnaA N-terminal domain
168-386 -94.600 79  PF00308.13; DNAA_STRCO/317-535; Bacterial dnaA protein
412-480 -33.300 47  PF08299.6; DNAA_PSEPU/414-483; Bacterial dnaA protein helix-turn-helix
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 PfamA26U 13-130 -49.400 29  PF00712.14; DPO3B_BACSU/1-127; DNA polymerase III beta subunit, N-terminal domain
138-260 -45.600 25  PF02767.11; DPO3B_PROMI/129-244; DNA polymerase III beta subunit, central domain
262-399 -42.900 26  PF02768.10; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 PfamA26U 1-382 -23.600 12  PF11398.3; Q6D3T4_ERWCT/1-377; Protein of unknown function (DUF2813 topsan)
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 PfamA26U 75-162 -37.100 25  PF05258.7; Q02A53_SOLUE/3-88; Protein of unknown function (DUF721 topsan)
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 PfamA26U 84-183 -9.520 18  PF13589.1; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
295-465 -77.700 44  PF00204.20; Q9R3E4_ACISP/115-285; DNA gyrase B
641-703 -41.400 61  PF00986.16; Q6MRR8_BDEBA/731-795; DNA gyrase B subunit, carboxyl terminus
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 PfamA26U 39-475 -96.700 31  PF00521.15; A1ZXC5_9BACT/29-447; DNA gyrase/topoisomerase IV, subunit A
621-666 -12.700 50  PF03989.8; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 PfamA26U 1-195 -11.000 PF05782.6; ECM1_HUMAN/1-540; Extracellular matrix protein 1 (ECM1)
185-303 -47.700 59  PF12089.3; Q0SAF2_RHOSR/350-466; Transmembrane domain of unknown function (DUF3566 topsan)
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 PfamA26U 9-145 -94.000 100  PF10814.3; Y008_MYCTU/9-145; Protein of unknown function (DUF2562 topsan)
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 PfamA26U 16-180 -57.100 34  PF00160.16; Q21K05_SACD2/30-188; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 PfamA26U 58-136 -24.200 18  PF10756.4; Q5YRV9_NOCFA/80-151; Protein of unknown function (DUF2581 topsan)
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 PfamA26U 1-93 -61.000 32  PF06781.7; A7BB21_9ACTO/1-87; Uncharacterised protein family (UPF0233 topsan)
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 PfamA26U 100-257 -63.100 29  PF05949.7; Q2RGA3_MOOTA/82-238; Bacterial protein of unknown function (DUF881 topsan)
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 PfamA26U 4-189 -38.100 22  PF00117.23; GUAA_SYNY3/30-212; Glutamine amidotransferase class-I
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 PfamA26U 11-270 -49.700 22  PF00069.20; KS6A1_MOUSE/407-664; Protein kinase domain
495-557 -14.600 23  PF03793.14; Q72S33_LEPIC/112-183; PASTA domain
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 PfamA26U 13-267 -47.700 24  PF00069.20; KS6A1_MOUSE/407-664; Protein kinase domain
371-430 -12.500 15  PF03793.14; Q72S33_LEPIC/112-183; PASTA domain
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 PfamA26U 33-93 -14.600 24  PF03717.10; Q8CXI6_OCEIH/55-207; Penicillin-binding Protein dimerisation domain
130-454 -73.600 21  PF00905.17; YQGF_BACSU/352-682; Penicillin binding protein transpeptidase domain
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 PfamA26U 45-410 -107.000 31  PF01098.14; SP5E_BACSU/10-366; Cell cycle protein
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 PfamA26U 17-235 -33.200 17  PF13672.1; C0DBA3_9CLOT/45-272; Protein phosphatase 2C
324-417 -12.000 18  PF08955.5; Q2B6F1_9BACI/93-167; BofC C-terminal domain
416-503 -9.770 20  PF12526.3; Q8JJN7_HEV/686-799; Protein of unknown function (DUF3729 topsan)
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 PfamA26U 84-147 -36.700 26  PF00498.21; Q8YS22_NOSS1/91-156; FHA domain
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 PfamA26U 5-316 -9.800 12  PF07271.6; P32_MYCGA/1-289; Cytadhesin P30/P32
8-123 -36.600 77  PF12401.3; Q744Q9_MYCPA/8-123; Protein of unknown function (DUF2662 topsan)
455-518 -22.300 42  PF00498.21; Q8YS22_NOSS1/91-156; FHA domain


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]