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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 PfamA26U 29-217 -55.000 18  PF14322.1; D3IK10_9BACT/22-231; Starch-binding associating with outer membrane
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 PfamA26U 8-49 -11.700 33  PF01915.17; Q8CVX0_ECOL6/395-650; Glycosyl hydrolase family 3 C-terminal domain
61-143 -10.100 11  PF05753.9; Q9VUZ0_DROME/9-186; Translocon-associated protein beta (TRAPB)
91-164 -18.900 17  PF14310.1; D1W6P3_9BACT/673-742; Fibronectin type III-like domain
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 PfamA26U 1-63 -7.740 21  PF07055.7; Y2233_BURXL/322-386; Enoyl reductase FAD binding domain
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 PfamA26U 1-120 -7.560 10  PF04603.7; Q98SG1_XENLA/5-145; Ran-interacting Mog1 protein
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 PfamA26U 6-120 -42.000 20  PF13657.1; A8G984_SERP5/4-104; HipA N-terminal domain
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 PfamA26U 23-147 -32.300 11  PF13338.1; A5VH48_SPHWW/39-172; Domain of unknown function (DUF4095 topsan)
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 PfamA26U 51-120 -7.070 PF11417.3; A7GI97_CLOBL/1-71; Loader and inhibitor of phage G40P
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 PfamA26U 15-107 -53.000 61  PF12957.2; C0FN75_9FIRM/66-158; Domain of unknown function (DUF3846 topsan)
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 PfamA26U 5-90 -38.700 33  PF12958.2; A7VG10_9CLOT/4-86; Protein of unknown function (DUF3847 topsan)
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 PfamA26U 4-188 -51.800 44  PF13310.1; Q8PUX5_METMA/68-330; Virulence protein RhuM family
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 PfamA26U 7-107 -33.800 88  PF12959.2; C0FUM1_9FIRM/5-105; Protein of unknown function (DUF3848 topsan)
112-239 -70.700 41  PF12960.2; A8RDW3_9FIRM/110-242; Protein of unknown function (DUF3849 topsan)
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 PfamA26U 23-118 -7.600 10  PF12876.2; Q73YI5_MYCPA/185-277; Sugar-binding cellulase-like
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 PfamA26U 3-127 -91.400 97  PF12962.2; D1PJ11_9FIRM/3-127; Protein of unknown function (DUF3851 topsan)
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 PfamA26U 42-122 -30.100 25  PF12958.2; A7VG10_9CLOT/4-86; Protein of unknown function (DUF3847 topsan)
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 PfamA26U 57-90 -9.500 29  PF07362.7; A3J7N2_9ALTE/14-85; Post-segregation antitoxin CcdA
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 PfamA26U 2-197 -9.550 17  PF04928.12; PAP_CANAL/3-351; Poly(A) polymerase central domain
25-177 -12.400 16  PF14091.1; C7PAK4_CHIPD/23-174; Domain of unknown function (DUF4269 topsan)
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 PfamA26U 5-115 -84.400 66  PF12963.2; B0TG46_HELMI/3-113; Protein of unknown function (DUF3852 topsan)
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 PfamA26U 7-106 -54.500 28  PF12964.2; B3CBT3_9BACE/3-97; Protein of unknown function (DUF3853 topsan)
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 PfamA26U 1-145 -11.400 PF01278.15; COLY_YERPE/21-312; Omptin family
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 PfamA26U 9-57 -8.290 14  PF03153.8; Q7QD50_ANOGA/10-358; Transcription factor IIA, alpha/beta subunit


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;