FFAS03 list of results E.coli / PfamA26U

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 PfamA26U 1-15 -4.830 33 PF07418.6; Q4YUM7_PLABA/1-292; Acidic phosphoprotein precursor PCEMA1
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 PfamA26U 614-810 -33.900 29 PF00742.14; C1P978_BACCO/136-314; Homoserine dehydrogenase
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 PfamA26U 83-150 -18.100 25 PF00288.21; ISPE_BACSU/86-144; GHMP kinases N terminal domain
220-287 -15.100 16 PF08544.8; ISPE_HAEDU/194-263; GHMP kinases C terminal
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 PfamA26U 84-379 -6.050 13 PF00291.20; A0Z504_9GAMM/17-322; Pyridoxal-phosphate dependent enzyme
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 PfamA26U 2-75 -36.400 54 PF10697.4; A6TC37_KLEP7/23-107; Protein of unknown function (DUF2502 topsan)
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 PfamA26U 1-245 -118.000 58 PF03883.9; Y1338_ALCBS/1-245; Protein of unknown function (DUF328 topsan)
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 PfamA26U 40-458 -126.000 44 PF01235.12; Y183_HAEIN/53-467; Sodium:alanine symporter family
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 PfamA26U 14-313 -115.000 57 PF00923.14; Q966C7_CAEEL/13-315; Transaldolase
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 PfamA26U 8-153 -20.400 19 PF00994.19; CINAL_DESPS/4-169; Probable molybdopterin binding domain
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 PfamA26U 3-186 -88.300 32 PF01184.14; A7TND9_VANPO/71-281; GPR1/FUN34/yaaH family
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 PfamA26U 5-39 -11.500 37 PF13099.1; D0W7K2_NEILA/3-37; Domain of unknown function (DUF3944 topsan)
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 PfamA26U 1-111 -74.100 80 PF10807.3; A6T4F3_KLEP7/1-134; Protein of unknown function (DUF2541 topsan)
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 PfamA26U 4-604 -182.000 59 PF00012.15; HSP77_YEAST/32-633; Hsp70 protein
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 PfamA26U 5-67 -39.700 54 PF00226.26; Q22028_CAEEL/17-79; DnaJ domain
142-344 -9.630 13 PF02335.10; NRFA_BACFN/56-493; Cytochrome c552
144-204 -30.900 41 PF00684.14; DNAJ1_CORGL/147-211; DnaJ central domain
262-340 -27.100 22 PF01556.13; A2FIH5_TRIVA/258-337; DnaJ C terminal domain
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 PfamA26U 9-360 -33.200 11 PF04693.7; Q5MPE9_9CREN/3-342; Archaeal putative transposase ISC1217
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 PfamA26U 24-66 -30.900 34 PF01848.11; D0FSB4_ERWPY/58-100; Hok/gef family
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 PfamA26U 5-47 -30.100 34 PF01848.11; D0FSB4_ERWPY/58-100; Hok/gef family
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 PfamA26U 4-380 -120.000 100 PF06965.7; NHAA_ECOLI/4-380; Na+/H+ antiporter 1
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 PfamA26U 13-66 -22.300 29 PF00126.22; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
90-295 -21.400 12 PF03466.15; Q98I60_RHILO/88-294; LysR substrate binding domain
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 PfamA26U 37-167 -84.100 97 PF03400.8; INBD_SHIDY/1-131; IS1 transposase

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|16127995\|ref\|NP_414542.1\| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655]`	`21`	`PfamA26U`	`1-15`	`-4.830`	`33`	`PF07418.6; Q4YUM7_PLABA/1-292; Acidic phosphoprotein precursor PCEMA1`
2	`gi\|16127996\|ref\|NP_414543.1\| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655]`	`820`	`PfamA26U`	`614-810`	`-33.900`	`29`	`PF00742.14; C1P978_BACCO/136-314; Homoserine dehydrogenase`
3	`gi\|16127997\|ref\|NP_414544.1\| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655]`	`310`	`PfamA26U`	`83-150`	`-18.100`	`25`	`PF00288.21; ISPE_BACSU/86-144; GHMP kinases N terminal domain`
				`220-287`	`-15.100`	`16`	`PF08544.8; ISPE_HAEDU/194-263; GHMP kinases C terminal`
4	`gi\|16127998\|ref\|NP_414545.1\| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655]`	`428`	`PfamA26U`	`84-379`	`-6.050`	`13`	`PF00291.20; A0Z504_9GAMM/17-322; Pyridoxal-phosphate dependent enzyme`
5	`gi\|16127999\|ref\|NP_414546.1\|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655]`	`75`	`PfamA26U`	`2-75`	`-36.400`	`54`	`PF10697.4; A6TC37_KLEP7/23-107; Protein of unknown function (DUF2502 topsan)`
6	`gi\|16128000\|ref\|NP_414547.1\| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655]`	`258`	`PfamA26U`	`1-245`	`-118.000`	`58`	`PF03883.9; Y1338_ALCBS/1-245; Protein of unknown function (DUF328 topsan)`
7	`gi\|16128001\|ref\|NP_414548.1\| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655]`	`476`	`PfamA26U`	`40-458`	`-126.000`	`44`	`PF01235.12; Y183_HAEIN/53-467; Sodium:alanine symporter family`
8	`gi\|16128002\|ref\|NP_414549.1\| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655]`	`317`	`PfamA26U`	`14-313`	`-115.000`	`57`	`PF00923.14; Q966C7_CAEEL/13-315; Transaldolase`
9	`gi\|16128003\|ref\|NP_414550.1\| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655]`	`195`	`PfamA26U`	`8-153`	`-20.400`	`19`	`PF00994.19; CINAL_DESPS/4-169; Probable molybdopterin binding domain`
10	`gi\|16128004\|ref\|NP_414551.1\| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655]`	`188`	`PfamA26U`	`3-186`	`-88.300`	`32`	`PF01184.14; A7TND9_VANPO/71-281; GPR1/FUN34/yaaH family`
11	`gi\|16128005\|ref\|NP_414552.1\| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655]`	`237`	`PfamA26U`	`5-39`	`-11.500`	`37`	`PF13099.1; D0W7K2_NEILA/3-37; Domain of unknown function (DUF3944 topsan)`
12	`gi\|16128007\|ref\|NP_414554.1\|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655]`	`111`	`PfamA26U`	`1-111`	`-74.100`	`80`	`PF10807.3; A6T4F3_KLEP7/1-134; Protein of unknown function (DUF2541 topsan)`
13	`gi\|16128008\|ref\|NP_414555.1\| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655]`	`638`	`PfamA26U`	`4-604`	`-182.000`	`59`	`PF00012.15; HSP77_YEAST/32-633; Hsp70 protein`
14	`gi\|16128009\|ref\|NP_414556.1\| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655]`	`376`	`PfamA26U`	`5-67`	`-39.700`	`54`	`PF00226.26; Q22028_CAEEL/17-79; DnaJ domain`
				`142-344`	`-9.630`	`13`	`PF02335.10; NRFA_BACFN/56-493; Cytochrome c552`
				`144-204`	`-30.900`	`41`	`PF00684.14; DNAJ1_CORGL/147-211; DnaJ central domain`
				`262-340`	`-27.100`	`22`	`PF01556.13; A2FIH5_TRIVA/258-337; DnaJ C terminal domain`
15	`gi\|16128010\|ref\|NP_414557.1\| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655]`	`370`	`PfamA26U`	`9-360`	`-33.200`	`11`	`PF04693.7; Q5MPE9_9CREN/3-342; Archaeal putative transposase ISC1217`
16	`gi\|16128012\|ref\|NP_414559.1\| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655]`	`69`	`PfamA26U`	`24-66`	`-30.900`	`34`	`PF01848.11; D0FSB4_ERWPY/58-100; Hok/gef family`
17	`gi\|49175991\|ref\|YP_025292.1\| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655]`	`50`	`PfamA26U`	`5-47`	`-30.100`	`34`	`PF01848.11; D0FSB4_ERWPY/58-100; Hok/gef family`
18	`gi\|16128013\|ref\|NP_414560.1\| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655]`	`388`	`PfamA26U`	`4-380`	`-120.000`	`100`	`PF06965.7; NHAA_ECOLI/4-380; Na+/H+ antiporter 1`
19	`gi\|16128014\|ref\|NP_414561.1\| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655]`	`301`	`PfamA26U`	`13-66`	`-22.300`	`29`	`PF00126.22; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family`
				`90-295`	`-21.400`	`12`	`PF03466.15; Q98I60_RHILO/88-294; LysR substrate binding domain`
20	`gi\|16128015\|ref\|NP_414562.1\| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655]`	`167`	`PfamA26U`	`37-167`	`-84.100`	`97`	`PF03400.8; INBD_SHIDY/1-131; IS1 transposase`