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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 PfamA26U 1-15 -4.830 33  PF07418.6; Q4YUM7_PLABA/1-292; Acidic phosphoprotein precursor PCEMA1
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 PfamA26U 614-810 -33.900 29  PF00742.14; C1P978_BACCO/136-314; Homoserine dehydrogenase
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 PfamA26U 83-150 -18.100 25  PF00288.21; ISPE_BACSU/86-144; GHMP kinases N terminal domain
220-287 -15.100 16  PF08544.8; ISPE_HAEDU/194-263; GHMP kinases C terminal
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 PfamA26U 84-379 -6.050 13  PF00291.20; A0Z504_9GAMM/17-322; Pyridoxal-phosphate dependent enzyme
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 PfamA26U 2-75 -36.400 54  PF10697.4; A6TC37_KLEP7/23-107; Protein of unknown function (DUF2502 topsan)
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 PfamA26U 1-245 -118.000 58  PF03883.9; Y1338_ALCBS/1-245; Protein of unknown function (DUF328 topsan)
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 PfamA26U 40-458 -126.000 44  PF01235.12; Y183_HAEIN/53-467; Sodium:alanine symporter family
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 PfamA26U 14-313 -115.000 57  PF00923.14; Q966C7_CAEEL/13-315; Transaldolase
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 PfamA26U 8-153 -20.400 19  PF00994.19; CINAL_DESPS/4-169; Probable molybdopterin binding domain
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 PfamA26U 3-186 -88.300 32  PF01184.14; A7TND9_VANPO/71-281; GPR1/FUN34/yaaH family
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 PfamA26U 5-39 -11.500 37  PF13099.1; D0W7K2_NEILA/3-37; Domain of unknown function (DUF3944 topsan)
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 PfamA26U 1-111 -74.100 80  PF10807.3; A6T4F3_KLEP7/1-134; Protein of unknown function (DUF2541 topsan)
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 PfamA26U 4-604 -182.000 59  PF00012.15; HSP77_YEAST/32-633; Hsp70 protein
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 PfamA26U 5-67 -39.700 54  PF00226.26; Q22028_CAEEL/17-79; DnaJ domain
142-344 -9.630 13  PF02335.10; NRFA_BACFN/56-493; Cytochrome c552
144-204 -30.900 41  PF00684.14; DNAJ1_CORGL/147-211; DnaJ central domain
262-340 -27.100 22  PF01556.13; A2FIH5_TRIVA/258-337; DnaJ C terminal domain
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 PfamA26U 9-360 -33.200 11  PF04693.7; Q5MPE9_9CREN/3-342; Archaeal putative transposase ISC1217
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 PfamA26U 24-66 -30.900 34  PF01848.11; D0FSB4_ERWPY/58-100; Hok/gef family
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 PfamA26U 5-47 -30.100 34  PF01848.11; D0FSB4_ERWPY/58-100; Hok/gef family
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 PfamA26U 4-380 -120.000 100  PF06965.7; NHAA_ECOLI/4-380; Na+/H+ antiporter 1
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 PfamA26U 13-66 -22.300 29  PF00126.22; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
90-295 -21.400 12  PF03466.15; Q98I60_RHILO/88-294; LysR substrate binding domain
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 PfamA26U 37-167 -84.100 97  PF03400.8; INBD_SHIDY/1-131; IS1 transposase


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.