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# Query Length Result vs. Range Score %id Covered by template(s)
1 ACL93468.1 301 COG1214 25-295 -90.900 28  [S] COG1806 Uncharacterized protein conserved in bacteria
H.sapiens 166-301 -9.710 15  sp|Q9Y3D8|KAD6_HUMAN Adenylate kinase isoenzyme 6 OS=Homo sapiens GN=TAF9 PE=1 SV=1
HGM_OVER 135-294 -5.950 12  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
JCSG1214 26-298 -111.000 30  RH20024B YP_806739.1 415236 Selected-2009-12-04
NEW_HUMAN_DOMAINS 148-207 -6.260 20  sp|Q9Y6X0|SETBP_HUMAN SET-binding protein OS=Homo sapiens GN=SETBP1 PE=1 SV=3 (Range: 1032-1093)
PDB1214 170-301 -9.630 18  1y63_A mol:protein length:184 Lmaj004144AAA protein
PfamA27U 32-287 -89.800 28  PF03618.9; PSRP_ACIAD/11-268; Kinase/pyrophosphorylase
SCOP175 171-298 -9.590 17  d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
VFDB 54-294 -4.790 14  VFG0756 (gi:6009386) bfpF - BfpF, NTP-binding protein/retraction [Escherichia coli B171] (VF0174)
2 ACL93469.1 199 COG1214 4-197 -99.200 45  [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation
H.sapiens 1-199 -70.100 27  sp|O95671|ASML_HUMAN N-acetylserotonin O-methyltransferase-like protein OS=Homo sapiens GN=ASMTL PE=1 SV=3 (Range: 1-300)
HGM_OVER 56-182 -4.590 12  HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;
JCSG1214 5-199 -71.700 31  TM1556 TM1556 283413 Purified-2003-03-05
NEW_HUMAN_DOMAINS 10-108 -5.080 13  sp|Q8WYQ5|DGCR8_HUMAN Microprocessor complex subunit DGCR8 OS=Homo sapiens GN=DGCR8 PE=1 SV=1 (Range: 60-169)
PDB1214 1-199 -84.300 29  4jhc_A mol:protein length:215 Maf-like protein YceF
PfamA27U 4-196 -76.200 27  PF02545.9; MAF_BACSU/3-188; Maf-like protein
SCOP175 3-194 -74.100 27  d1ex2a_ c.51.4.2 (A:) Maf protein {Bacillus subtilis [TaxId: 1423]}
VFDB 1-184 -6.040 12  VFG0245 (gi:15677758) lgtB - lacto-N-neotetraose biosynthesis glycosyl transferase LgtB [Neisseria meningitidis MC58 (serogroup B)] (VF0078)
3 ACL93470.1 285 COG1214 5-285 -95.600 34  [E] COG0169 Shikimate 5-dehydrogenase
H.sapiens 67-247 -12.000 16  sp|Q9UDR5|AASS_HUMAN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1 (Range: 301-600)
100-271 -14.400 16  sp|Q9UDR5|AASS_HUMAN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1 (Range: 451-750)
HGM_OVER 49-165 -3.430 10  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
JCSG1214 11-280 -85.900 29  TM0346 TM0346 282221 Crystal|NMR-2004-09-22
NEW_HUMAN_DOMAINS 68-144 -5.950 tr|A6NMH3|A6NMH3_HUMAN Uncharacterized protein OS=Homo sapiens GN=TNNI3K PE=4 SV=1 (Range: 25-169)
PDB1214 10-281 -95.300 34  1nyt_A mol:protein length:271 Shikimate 5-dehydrogenase
PfamA27U 14-96 -42.200 29  PF08501.6; ARO1_EMENI/1294-1374; Shikimate dehydrogenase substrate binding domain
126-252 -18.500 22  PF01488.15; HEM1_BACHD/171-306; Shikimate / quinate 5-dehydrogenase
SCOP175 10-109 -58.900 36  d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
110-281 -60.500 33  d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
VFDB 131-260 -8.110 17  VFG0361 (gi:16122157) ybtU - yersiniabactin biosynthetic protein YbtU [Yersinia pestis CO92] (VF0136)
4 ACL93471.1 199 COG1214 2-193 -86.700 38  [H] COG0237 Dephospho-CoA kinase
H.sapiens 1-198 -81.500 30  sp|Q8WVC6|DCAKD_HUMAN Dephospho-CoA kinase domain-containing protein OS=Homo sapiens GN=DCAKD PE=1 SV=1
HGM_OVER 23-105 -3.620 11  PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;
JCSG1214 1-198 -86.800 30  RV1387B XM_003131326 423348 Selected-2011-02-23
NEW_HUMAN_DOMAINS 6-98 -5.550 17  sp|Q6NZ63|STEAL_HUMAN STEAP family member 1B OS=Homo sapiens GN=STEAP1B PE=2 SV=1 (Range: 1-97)
PDB1214 1-199 -87.700 34  1uf9_A mol:protein length:203 TT1252 protein
PfamA27U 2-181 -77.300 28  PF01121.15; COAE_VIBVU/3-182; Dephospho-CoA kinase
SCOP175 1-195 -87.600 34  d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
VFDB 1-187 -9.740 17  VFG0274 (gi:15644698) ureG - urease accessory protein (ureG) [Helicobacter pylori 26695] (VF0050)
5 ACL93472.1 237 COG1214 2-229 -115.000 36  [L] COG0847 DNA polymerase III, epsilon subunit and related 3`-5` exonucleases
H.sapiens 3-197 -12.800 16  sp|Q9Y3B8|ORN_HUMAN Oligoribonuclease, mitochondrial OS=Homo sapiens GN=REXO2 PE=1 SV=3
5-168 -39.300 25  sp|Q9BQ50|TREX2_HUMAN Three prime repair exonuclease 2 OS=Homo sapiens GN=TREX2 PE=1 SV=1
HGM_OVER 65-160 -4.100 13  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
JCSG1214 2-173 -77.900 34  TM0496 TM0496 282369 Purified-2001-02-21
NEW_HUMAN_DOMAINS 66-169 -5.220 15  sp|O15050|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4 (Range: 325-445)
PDB1214 1-180 -107.000 43  2gui_A mol:protein length:194 DNA polymerase III epsilon subunit
PfamA27U 5-164 -102.000 46  PF00929.19; DPO3E_ECOLI/9-175; Exonuclease
SCOP175 3-169 -105.000 46  d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
VFDB 47-158 -6.260 12  VFG2367 (gi:123443285) wbcH - putative glycosyl transferase [Yersinia enterocolitica 8081] (VF0392)
6 ACL93473.1 262 COG1214 7-262 -117.000 49  [I] KOG1680 Enoyl-CoA hydratase
H.sapiens 2-261 -112.000 55  sp|P30084|ECHM_HUMAN Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4
HGM_OVER 24-143 -2.490 17  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
JCSG1214 3-261 -81.900 29  WT20715A.ECH1 NM_001398 422936 Selected-2010-11-11
NEW_HUMAN_DOMAINS 18-102 -4.700 sp|Q8IVL0|NAV3_HUMAN Neuron navigator 3 OS=Homo sapiens GN=NAV3 PE=1 SV=3 (Range: 1916-2020)
PDB1214 2-261 -118.000 57  1dub_A mol:protein length:261 2-ENOYL-COA HYDRATASE
PfamA27U 15-261 -81.800 25  PF00378.15; FADB_ECOLI/10-267; Enoyl-CoA hydratase/isomerase family
SCOP175 2-261 -119.000 57  d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 95-156 -4.500 24  VFG0305 (gi:15645172) cag25 - cag pathogenicity island protein (cag25) [Helicobacter pylori 26695] (VF0060)
7 ACL93474.1 96 COG1214 6-92 -55.600 33  [J] COG0268 Ribosomal protein S20
H.sapiens 2-87 -6.940 16  sp|Q7Z353|HDX_HUMAN Highly divergent homeobox OS=Homo sapiens GN=HDX PE=1 SV=1 (Range: 451-690)
HGM_OVER 6-96 -3.410 15  PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
JCSG1214 6-96 -54.200 28  TM1657 TM1657 283514 Purified-2001-12-11
NEW_HUMAN_DOMAINS 25-85 -6.450 14  sp|Q86VI3|IQGA3_HUMAN Ras GTPase-activating-like protein IQGAP3 OS=Homo sapiens GN=IQGAP3 PE=1 SV=2 (Range: 274-339)
PDB1214 1-96 -56.300 26  1fjg_T mol:protein length:106 30S RIBOSOMAL PROTEIN S20
PfamA27U 7-90 -47.800 27  PF01649.13; RS20_SYNY3/2-92; Ribosomal protein S20
SCOP175 8-96 -54.000 27  d2uubt1 a.7.6.1 (T:8-106) Ribosomal protein S20 {Thermus thermophilus [TaxId: 274]}
VFDB 6-84 -5.590 13  VFG0756 (gi:6009386) bfpF - BfpF, NTP-binding protein/retraction [Escherichia coli B171] (VF0174)
8 ACL93475.1 490 COG1214 22-490 -120.000 32  [L] COG0593 ATPase involved in DNA replication initiation
H.sapiens 159-490 -13.100 11  sp|Q99741|CDC6_HUMAN Cell division control protein 6 homolog OS=Homo sapiens GN=CDC6 PE=1 SV=1
HGM_OVER 198-319 -3.100 10  PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;
JCSG1214 20-489 -128.000 100  C.LS21333A NP_418828.1 430427 Purified-2014-07-08
NEW_HUMAN_DOMAINS 164-301 -4.690 13  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB1214 26-490 -109.000 25  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
PfamA27U 24-87 -19.100 27  PF11638.3; DNAA_LAWIP/5-67; DnaA N-terminal domain
149-373 -91.400 37  PF00308.13; DNAA_STRCO/317-535; Bacterial dnaA protein
398-467 -42.100 64  PF08299.6; DNAA_PSEPU/414-483; Bacterial dnaA protein helix-turn-helix
SCOP175 145-408 -10.600 14  d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
147-368 -86.600 29  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
397-490 -48.400 61  d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
VFDB 145-328 -13.800 16  VFG1729 (gi:26249443) c3608 - Hypothetical protein [Escherichia coli CFT073]
9 ACL93476.1 206 COG1214 6-206 -99.100 52  [L] COG3145 Alkylated DNA repair protein
H.sapiens 10-206 -71.800 25  sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2
HGM_OVER 61-177 -4.020 11  PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;
JCSG1214 6-186 -21.200 18  MA4241A XP_001471779.1 400140 Cloned-2009-03-24
NEW_HUMAN_DOMAINS 69-202 -4.800 sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2 (Range: 698-848)
PDB1214 5-206 -98.900 38  4nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase Alk
PfamA27U 11-201 -95.900 41  PF13532.1; A3WP94_9GAMM/15-207; 2OG-Fe(II) oxygenase superfamily
SCOP175 8-203 -97.400 40  d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}
VFDB 102-175 -4.900 16  VFG1306 (gi:21281862) cap8J - capsular polysaccharide synthesis enzyme Cap8J [Staphylococcus aureus MW2] (VF0003)
10 ACL93477.1 631 COG1214 1-630 -183.000 59  [O] COG0443 Molecular chaperone
H.sapiens 4-500 -126.000 32  sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1
250-548 -115.000 67  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 301-600)
292-581 -87.100 52  sp|P11021|GRP78_HUMAN(removed signalp:1-18) 78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2 (Range: 301-600)
400-620 -82.400 53  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 451-679)
HGM_OVER 115-490 -3.920 11  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
JCSG1214 1-609 -175.000 55  TM0373 TM0373 282248 Purified-2001-03-14
NEW_HUMAN_DOMAINS 377-497 -10.500 19  sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2 (Range: 520-675)
PDB1214 1-600 -188.000 66  2kho_A mol:protein length:605 Heat shock protein 70
1-631 -121.000 25  3d2e_A mol:protein length:675 Heat shock protein homolog SSE1
PfamA27U 4-599 -187.000 62  PF00012.15; HSP77_YEASX/32-633; Hsp70 protein
SCOP175 2-184 -73.000 57  d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
184-378 -60.800 49  d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
384-501 -75.600 72  d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
502-597 -41.200 52  d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
VFDB 2-400 -9.970 18  VFG1222 (gi:15600237) pilM - type 4 fimbrial biogenesis protein PilM [Pseudomonas aeruginosa PAO1] (VF0082)
11 ACL93478.1 385 COG1214 1-380 -133.000 45  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
H.sapiens 1-381 -119.000 31  sp|Q96EY1|DNJA3_HUMAN(removed signalp:1-21) DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2
HGM_OVER 143-226 -4.630 21  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
JCSG1214 1-363 -120.000 39  TM0849 TM0849 282719 Selected-2001-10-12
NEW_HUMAN_DOMAINS 4-203 -7.720 14  sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2 (Range: 1539-1749)
PDB1214 2-362 -80.900 35  3lz8_A mol:protein length:329 Putative chaperone DnaJ
PfamA27U 3-65 -41.000 54  PF00226.26; Q22028_CAEEL/17-79; DnaJ domain
8-103 -18.800 10  PF14687.1; A7RRF5_NEMVE/89-191; Domain of unknown function (DUF4460 topsan)
148-208 -31.500 42  PF00684.14; DNAJ1_CORGL/147-211; DnaJ central domain
266-351 -19.100 25  PF01556.13; A2FIH5_TRIVA/258-337; DnaJ C terminal domain
SCOP175 1-74 -48.600 55  d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
1-110 -36.200 18  d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
119-258 -16.000 16  d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
135-213 -44.600 55  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
260-354 -26.900 30  d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 10-341 -4.900 11  VFG1493 (gi:24528024) ORF42 - FasG-like protein [Escherichia coli 536]
12 ACL93479.1 903 COG1214 16-901 -208.000 34  [L] COG0249 Mismatch repair ATPase (MutS family)
H.sapiens 11-195 -46.500 27  sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2 (Range: 301-600)
95-347 -47.500 24  sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4 (Range: 301-600)
285-584 -52.400 20  sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1 (Range: 301-600)
347-659 -54.800 17  sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4 (Range: 601-900)
435-736 -81.700 30  sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1 (Range: 451-750)
502-811 -94.000 33  sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4 (Range: 751-1050)
585-886 -94.600 34  sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1 (Range: 601-900)
HGM_OVER 490-631 -4.260 PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
JCSG1214 3-903 -170.000 23  RG1719A.MSH2 BC021566 421805 Selected-2010-11-11
17-849 -199.000 35  TM1719 TM1719 283575 Purified-2004-02-02
NEW_HUMAN_DOMAINS 650-742 -5.170 13  tr|E9PKE1|E9PKE1_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1 (Range: 25-162)
PDB1214 3-903 -170.000 23  2o8b_A mol:protein length:934 DNA mismatch repair protein Msh2
10-841 -218.000 37  1e3m_A mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
11-880 -176.000 27  2o8b_B mol:protein length:1022 DNA mismatch repair protein MSH6
PfamA27U 19-136 -71.400 67  PF01624.15; MUTS_AGRT5/20-137; MutS domain I
144-272 -33.100 23  PF05188.12; MUTS_SYNY3/150-289; MutS domain II
287-593 -77.100 30  PF05192.13; Q6MLQ3_BDEBA/243-530; MutS domain III
601-840 -90.200 38  PF00488.16; MSH6_SCHPO/974-1211; MutS domain V
SCOP175 10-129 -65.200 51  d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}
130-285 -40.400 23  d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]}
286-600 -79.300 30  d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}
601-841 -99.300 50  d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 7-901 -225.000 37  VFG0562 (gi:16766215) mutS - methyl-directed mismatch repair, recognize exocyclic adducts of guanosine [Salmonella enterica (serovar typhimurium) LT2]
13 ACL93480.1 940 COG1214 10-923 -183.000 27  [O] COG2844 UTP:GlnB (protein PII) uridylyltransferase
H.sapiens 453-674 -7.990 15  sp|O76083|PDE9A_HUMAN High affinity cGMP-specific 3`,5`-cyclic phosphodiesterase 9A OS=Homo sapiens GN=PDE9A PE=1 SV=1
HGM_OVER 492-654 -5.170 11  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
JCSG1214 38-340 -9.880 15  FR15268A NP_600093.1 392154 Crystal|NMR-2009-05-12
105-185 -11.900 17  TM1001 TM1001 282870 Purified-2001-11-06
444-656 -24.200 20  PL10453A YP_384072.1 401473 Crystal|NMR-2009-10-09
NEW_HUMAN_DOMAINS 568-640 -7.650 13  sp|O60813|PRA11_HUMAN PRAME family member 11 OS=Homo sapiens GN=PRAMEF11 PE=2 SV=3 (Range: 1-79)
PDB1214 15-305 -15.300 17  3k7d_A mol:protein length:498 Glutamate-ammonia-ligase adenylyltransferase
214-632 -20.900 19  3wfo_A mol:protein length:525 Poly A polymerase
458-679 -10.300 12  2pq7_A mol:protein length:220 Predicted HD superfamily hydrolase
738-918 -10.100 16  2nyi_A mol:protein length:195 unknown protein
PfamA27U 15-197 -9.990 19  PF03710.10; GLNE_ECOLI/552-806; Glutamate-ammonia ligase adenylyltransferase
210-350 -70.300 37  PF08335.6; A1K6S3_AZOSB/170-310; GlnD PII-uridylyltransferase
498-633 -10.100 14  PF13875.1; B2B536_PODAN/12-199; Domain of unknown function (DUF4202 topsan)
845-913 -9.550 18  PF13740.1; C4UDS4_YERAL/13-88; ACT domain
SCOP175 71-201 -12.800 11  d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
214-350 -10.600 14  d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
391-627 -11.900 15  d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}
464-679 -10.500 15  d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}
VFDB 46-779 -7.970 VFG2297 (gi:123229205) bont/a - neurotoxin A [Clostridium botulinum Hall 183] (VF0375)
14 ACL93481.1 158 COG1214 1-156 -104.000 60  [H] COG0315 Molybdenum cofactor biosynthesis enzyme
H.sapiens 1-155 -94.900 49  sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3 (Range: 451-636)
HGM_OVER 34-149 -3.790 16  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
JCSG1214 20-146 -6.400 15  SP17300A ZP_02066443.1 408671 Purified-2010-09-29
NEW_HUMAN_DOMAINS 48-120 -6.500 24  sp|P35712|SOX6_HUMAN Transcription factor SOX-6 OS=Homo sapiens GN=SOX6 PE=1 SV=3 (Range: 286-375)
PDB1214 1-157 -104.000 59  1ekr_A mol:protein length:161 MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C
PfamA27U 15-148 -90.500 61  PF01967.16; MOAC_HAEIN/15-150; MoaC family
SCOP175 11-154 -97.200 61  d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
VFDB 14-142 -4.970 17  VFG1387 (gi:15607920) purC - purC [Mycobacterium tuberculosis H37Rv]
15 ACL93482.1 183 COG1214 19-163 -43.300 22  [H] COG0521 Molybdopterin biosynthesis enzymes
H.sapiens 19-160 -41.600 31  sp|Q9NQX3|GEPH_HUMAN Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1 (Range: 1-300)
HGM_OVER 21-117 -4.590 12  HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;
JCSG1214 16-164 -15.000 23  GE7651A YP_001088583.1 396890 Crystal|NMR-2009-07-18
NEW_HUMAN_DOMAINS 90-151 -5.300 21  tr|F5H1Y7|F5H1Y7_HUMAN Uncharacterized protein OS=Homo sapiens GN=TBR1 PE=4 SV=1 (Range: 154-237)
PDB1214 12-179 -97.800 41  1mkz_A mol:protein length:172 Molybdenum cofactor biosynthesis protein B
PfamA27U 24-166 -19.200 24  PF00994.19; CINAL_DESPS/4-169; Probable molybdopterin binding domain
SCOP175 12-179 -98.100 41  d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
VFDB 79-159 -6.390 24  VFG1951 (gi:15792741) Cj1423c - putative sugar-phosphate nucleotidyltransferase [Campylobacter jejuni NCTC 11168] (VF0323)
16 ACL93483.1 150 COG1214 2-146 -91.000 44  [H] COG0314 Molybdopterin converting factor, large subunit
H.sapiens 2-144 -71.100 23  sp|O96007|MOC2B_HUMAN Molybdopterin synthase catalytic subunit OS=Homo sapiens GN=MOCS2 PE=1 SV=1
HGM_OVER 52-132 -5.380 13  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
JCSG1214 4-146 -8.570 14  GS13213A NP_810470.1 384637 Crystal|NMR-2009-01-08
NEW_HUMAN_DOMAINS 52-112 -5.490 29  sp|Q6UB98|ANR12_HUMAN Ankyrin repeat domain-containing protein 12 OS=Homo sapiens GN=ANKRD12 PE=1 SV=3 (Range: 1817-1962)
PDB1214 2-146 -91.000 45  1fm0_E mol:protein length:150 MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2
PfamA27U 2-118 -58.500 24  PF02391.12; MOC2B_ARATH/10-126; MoaE protein
SCOP175 1-146 -91.200 45  d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE {Escherichia coli [TaxId: 562]}
VFDB 27-69 -5.470 12  VFG1211 (gi:15599751) pilY2 - type 4 fimbrial biogenesis protein PilY2 [Pseudomonas aeruginosa PAO1] (VF0082)
17 ACL93484.1 79 COG1214 2-79 -25.400 26  [H] COG1977 Molybdopterin converting factor, small subunit
H.sapiens 2-79 -46.400 26  sp|O96033|MOC2A_HUMAN Molybdopterin synthase sulfur carrier subunit OS=Homo sapiens GN=MOCS2 PE=1 SV=1
HGM_OVER 6-77 -3.140 11  PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;
JCSG1214 2-77 -6.420 EC5331A NP_417108.2 358304 Purified-2004-06-01
NEW_HUMAN_DOMAINS 11-78 -5.850 sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 1-120)
PDB1214 1-79 -56.900 29  1fm0_D mol:protein length:81 MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 1
PfamA27U 2-77 -25.600 17  PF14451.1; Q13TC6_BURXL/1-81; Mut7-C ubiquitin
SCOP175 1-79 -56.900 29  d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}
VFDB 3-77 -4.230 18  VFG0176 (gi:15598293) xcpX - general secretion pathway protein K [Pseudomonas aeruginosa PAO1] (VF0084)
18 ACL93485.1 349 COG1214 9-349 -123.000 66  [H] COG2896 Molybdenum cofactor biosynthesis enzyme
H.sapiens 7-263 -85.200 34  sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3 (Range: 1-300)
115-349 -77.000 31  sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3 (Range: 151-450)
HGM_OVER 31-279 -3.290 12  HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;
JCSG1214 1-311 -27.100 13  C.KS20802A NP_372401.1 423894 Purified-2012-03-02
20-299 -49.700 16  FN5710A NP_282391.1 379204 Purified-2008-01-18
NEW_HUMAN_DOMAINS 269-322 -5.810 18  sp|Q6IQ32|ADNP2_HUMAN ADNP homeobox protein 2 OS=Homo sapiens GN=ADNP2 PE=2 SV=1 (Range: 210-266)
PDB1214 20-349 -110.000 32  1tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A
PfamA27U 36-199 -11.500 15  PF04055.16; CDKAL_HUMAN/208-381; Radical SAM superfamily
204-331 -51.500 43  PF06463.8; MOAA_PSESM/185-315; Molybdenum Cofactor Synthesis C
SCOP175 21-342 -109.000 32  d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
VFDB 31-301 -28.100 12  VFG1961 (gi:15792751) Cj1433c - hypothetical protein Cj1433c [Campylobacter jejuni NCTC 11168] (VF0323)
19 ACL93486.1 210 COG1214 1-209 -77.900 31  [R] COG2068 Uncharacterized MobA-related protein
H.sapiens 1-205 -19.000 16  sp|A4D126|ISPD_HUMAN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase-like protein OS=Homo sapiens GN=ISPD PE=3 SV=2
HGM_OVER 9-111 -2.700 13  PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
JCSG1214 11-206 -23.000 17  TM1418 TM1418 372113 Purified-2006-08-29
NEW_HUMAN_DOMAINS 88-208 -5.080 20  tr|B4DF73|B4DF73_HUMAN Uncharacterized protein OS=Homo sapiens GN=PTCD3 PE=2 SV=1 (Range: 61-208)
PDB1214 5-209 -78.100 27  2we9_A mol:protein length:197 MOBA-RELATED PROTEIN
PfamA27U 9-205 -17.000 12  PF01983.11; COFC_ARCFU/1-205; Guanylyl transferase CofC like
11-177 -34.700 22  PF12804.2; Q5WJM4_BACSK/5-167; MobA-like NTP transferase domain
SCOP175 8-200 -27.500 23  d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}
VFDB 9-209 -22.400 12  VFG0328 (gi:16273439) lic1C - lic-1 operon protein (licC) [Haemophilus influenzae Rd] (VF0044)
20 ACL93487.1 74 COG1214 12-65 -6.880 20  [G] COG4806 L-rhamnose isomerase
H.sapiens 11-68 -6.940 10  sp|Q9BY10|TSCOT_HUMAN Thymic stromal cotransporter homolog OS=Homo sapiens GN=SLC46A2 PE=2 SV=1
HGM_OVER 19-65 -5.130 14  PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;
JCSG1214 1-70 -6.900 10  TM1523 TM1523 283380 Crystal|NMR-2003-01-07
NEW_HUMAN_DOMAINS 21-55 -5.990 22  sp|Q12947|FOXF2_HUMAN Forkhead box protein F2 OS=Homo sapiens GN=FOXF2 PE=1 SV=2 (Range: 193-254)
PDB1214 12-65 -6.550 14  3p14_A mol:protein length:424 L-rhamnose isomerase
PfamA27U 1-65 -7.660 20  PF09543.5; Q098Z5_STIAD/2-123; Protein of unknown function (DUF2379 topsan)
SCOP175 12-65 -7.290 22  d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]}
VFDB 11-65 -4.810 11  VFG0063 (gi:33593259) orf1 - conserved hypothetical protein [Bordetella pertussis Tohama I] (VF0035)


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.