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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 COG0614 46-126 -6.220 11  [S] COG4837 Uncharacterized protein conserved in bacteria
H.sapiens 43-132 -9.060 15  sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3 (Range: 901-1200)
HGM_OVER 11-124 -4.580 14  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
NEW_HUMAN_DOMAINS 35-106 -6.440 15  sp|A4D997|CI102_HUMAN Uncharacterized protein C9orf102 OS=Homo sapiens GN=C9orf102 PE=1 SV=3 (Range: 175-256)
PDB0614 26-132 -7.910 10  3kwt_A mol:protein length:148 Munc13-1
PfamA27U 44-106 -7.930 12  PF00168.25; Q9LS53_ARATH/577-655; C2 domain
SCOP175 44-132 -6.470 15  d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 8-129 -4.580 VFG0739 (gi:2865299) eae - intimin [Escherichia coli E2348/69] (VF0177)
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 COG0614 2-224 -101.000 40  [Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component
H.sapiens 2-222 -49.800 23  sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=2 (Range: 4651-4950)
HGM_OVER 114-224 -4.350 15  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
NEW_HUMAN_DOMAINS 93-190 -6.190 11  sp|O94941|RNF37_HUMAN RING finger protein 37 OS=Homo sapiens GN=UBOX5 PE=2 SV=1 (Range: 113-214)
PDB0614 4-224 -112.000 48  3tif_A mol:protein length:235 Uncharacterized ABC transporter ATP-binding p
PfamA27U 18-215 -13.600 14  PF10443.4; Q5B2U3_EMENI/373-791; RNA12 protein
24-173 -42.600 28  PF00005.22; YTFR_ECOLI/25-174; ABC transporter
SCOP175 4-224 -113.000 49  d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
VFDB 12-219 -101.000 36  VFG0869 (gi:34148232) aatC - AatC ATB binding protein of ABC transporter [Escherichia coli 042] (VF0215)
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 COG0614 2-121 -62.100 30  [J] COG0858 Ribosome-binding factor A
H.sapiens 2-121 -40.100 17  sp|Q8N0V3|RBFAL_HUMAN Putative ribosome-binding factor A, mitochondrial OS=Homo sapiens GN=C18orf22 PE=1 SV=3
HGM_OVER 1-108 -3.590 13  PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;
NEW_HUMAN_DOMAINS 2-74 -6.280 13  sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2 (Range: 935-1008)
PDB0614 2-121 -61.700 33  1jos_A mol:protein length:128 RIBOSOME-BINDING FACTOR A
PfamA27U 5-109 -56.700 33  PF02033.13; A3Y8H6_9GAMM/7-113; Ribosome-binding factor A
SCOP175 5-103 -54.800 39  d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
VFDB 20-80 -5.690 13  VFG1041 (gi:15808721) orf25 - unknown [Shigella flexneri (serotype 2a) YSH6000]
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 COG0614 2-276 -92.900 27  [A] KOG0820 Ribosomal RNA adenine dimethylase
H.sapiens 2-276 -92.900 27  sp|Q9UNQ2|DIMT1_HUMAN Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1L PE=1 SV=1
HGM_OVER 61-249 -3.910 13  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
NEW_HUMAN_DOMAINS 24-150 -6.460 13  tr|E9PL53|E9PL53_HUMAN Uncharacterized protein OS=Homo sapiens GN=SAAL1 PE=4 SV=1 (Range: 69-209)
PDB0614 2-276 -111.000 35  3grr_A mol:protein length:295 Dimethyladenosine transferase
PfamA27U 15-269 -92.500 25  PF00398.15; DIM1_YEAST/27-282; Ribosomal RNA adenine dimethylase
SCOP175 23-276 -97.800 34  d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}
VFDB 41-224 -8.820 11  VFG1954 (gi:15792744) Cj1426c - hypothetical protein Cj1426c [Campylobacter jejuni NCTC 11168] (VF0323)
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 COG0614 1-202 -74.300 40  [G] KOG3076 5`-phosphoribosylglycinamide formyltransferase
H.sapiens 1-202 -70.400 40  sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1 (Range: 751-1010)
HGM_OVER 110-193 -4.510 27  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
NEW_HUMAN_DOMAINS 83-147 -6.040 21  sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1 (Range: 2450-2542)
PDB0614 1-204 -79.700 50  2ywr_A mol:protein length:216 Phosphoribosylglycinamide formyltransferase
PfamA27U 2-185 -72.500 40  PF00551.14; PUR2_DROME/1154-1336; Formyl transferase
SCOP175 2-202 -74.300 34  d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]}
VFDB 3-197 -28.800 23  VFG2230 (gi:17987701) wbkC - GDP-mannose 4,6-dehydratase / GDP-4-amino-4,6-dideoxy-D-mannose formyltransferase [Brucella melitensis 16M] (VF0367)
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 COG0614 1-191 -75.300 19  [G] COG0406 Fructose-2,6-bisphosphatase
H.sapiens 2-190 -68.800 23  sp|Q9NQ88|TIGAR_HUMAN Probable fructose-2,6-bisphosphatase TIGAR OS=Homo sapiens GN=TIGAR PE=1 SV=1
HGM_OVER 17-139 -4.720 15  PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;
NEW_HUMAN_DOMAINS 49-118 -6.750 12  sp|Q6L9W6|B4GN3_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=B4GALNT3 PE=1 SV=2 (Range: 327-408)
PDB0614 1-191 -96.700 29  4ij5_A mol:protein length:211 Phosphoserine phosphatase 1
PfamA27U 3-152 -41.400 26  PF00300.17; Q756M6_ASHGO/9-242; Histidine phosphatase superfamily (branch 1)
SCOP175 2-191 -93.200 25  d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR) {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 41-159 -7.200 12  VFG0869 (gi:34148232) aatC - AatC ATB binding protein of ABC transporter [Escherichia coli 042] (VF0215)
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 COG0614 2-470 -132.000 40  [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
H.sapiens 4-468 -84.000 31  sp|Q9H227|GBA3_HUMAN Cytosolic beta-glucosidase OS=Homo sapiens GN=GBA3 PE=1 SV=2
HGM_OVER 352-470 -4.060 PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
NEW_HUMAN_DOMAINS 388-454 -5.910 11  sp|A6NFU0|F187A_HUMAN Ig-like V-type domain-containing protein FAM187A OS=Homo sapiens GN=FAM187A PE=3 SV=1 (Range: 142-237)
PDB0614 2-471 -136.000 40  3pn8_A mol:protein length:480 Putative phospho-beta-glucosidase
PfamA27U 1-469 -136.000 39  PF00232.13; ARBB_ERWCH/1-461; Glycosyl hydrolase family 1
SCOP175 1-470 -114.000 35  d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL {Lactococcus lactis [TaxId: 1358]}
VFDB 13-472 -4.950 10  VFG1396 (gi:15609045) katG - katG [Mycobacterium tuberculosis H37Rv] (VF0303)
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 COG0614 5-264 -64.500 27  [I] KOG4667 Predicted esterase
H.sapiens 7-263 -55.900 17  sp|Q9NUJ1|ABHDA_HUMAN(removed signalp:1-21) Abhydrolase domain-containing protein 10, mitochondrial OS=Homo sapiens GN=ABHD10 PE=1 SV=1
HGM_OVER 62-259 -2.890 11  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
NEW_HUMAN_DOMAINS 5-77 -8.260 12  tr|F8WBB3|F8WBB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABHD1 PE=4 SV=1 (Range: 22-102)
PDB0614 4-263 -79.000 32  3pf8_A mol:protein length:270 Cinnamoyl esterase
PfamA27U 7-262 -53.900 17  PF02273.10; LUXD2_PHOLU/8-301; Acyl transferase
SCOP175 6-264 -50.100 16  d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]}
VFDB 5-259 -31.500 13  VFG0156 (gi:15598675) rhlA - rhamnosyltransferase chain A [Pseudomonas aeruginosa PAO1] (VF0089)
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 COG0614 1-500 -120.000 29  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 6-330 -10.300 12  sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2 (Range: 451-750)
HGM_OVER 315-384 -3.540 18  HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;
NEW_HUMAN_DOMAINS 315-420 -4.920 16  sp|Q9C0F1|CEP44_HUMAN Centrosomal protein of 44 kDa OS=Homo sapiens GN=CEP44 PE=1 SV=2 (Range: 1-117)
PDB0614 1-500 -124.000 29  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA27U 10-497 -15.000 12  PF04257.9; C4ZZX4_ECOBW/1-836; Exodeoxyribonuclease V, gamma subunit
SCOP175 5-493 -14.700 15  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
276-499 -19.900 13  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 5-361 -5.120 VFG1835 (gi:52840691) icmO - IcmO (DotL) [Legionella pneumophila Philadelphia 1] (VF0156)
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 COG0614 1-500 -114.000 30  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 56-407 -6.430 sp|Q9NWS1|CL048_HUMAN UPF0419 protein C12orf48 OS=Homo sapiens GN=C12orf48 PE=2 SV=3
HGM_OVER 65-135 -3.060 18  HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;
NEW_HUMAN_DOMAINS 300-432 -5.440 12  sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2 (Range: 576-746)
PDB0614 1-500 -116.000 30  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA27U 49-429 -24.100 14  PF04257.9; C4ZZX4_ECOBW/1-836; Exodeoxyribonuclease V, gamma subunit
SCOP175 26-500 -41.000 12  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 7-345 -5.890 12  VFG1447 (gi:403299) cnf1 - cytotoxic necrotizing factor 1 [Escherichia coli] (VF0240)
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 COG0614 1-500 -137.000 32  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 124-495 -9.580 12  sp|Q9BQP7|CT072_HUMAN Uncharacterized protein C20orf72 OS=Homo sapiens GN=C20orf72 PE=1 SV=1
276-470 -14.300 18  sp|Q9H790|DEM1_HUMAN Defects in morphology protein 1 homolog OS=Homo sapiens GN=DEM1 PE=2 SV=1
HGM_OVER 353-462 -3.120 13  HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;
NEW_HUMAN_DOMAINS 313-454 -5.720 12  tr|B4DQ88|B4DQ88_HUMAN Uncharacterized protein OS=Homo sapiens GN=EMR2 PE=2 SV=1 (Range: 1-160)
PDB0614 1-500 -137.000 32  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA27U 244-498 -15.200 18  PF06023.7; Q96X76_SULTO/1-279; Archaeal protein of unknown function (DUF911 topsan)
276-495 -22.400 18  PF12705.2; B5D322_9BACE/660-959; PD-(D/E)XK nuclease superfamily
SCOP175 13-250 -19.600 13  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 39-490 -5.430 10  VFG1281 (gi:21282247) sdrE - Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [Staphylococcus aureus MW2] (VF0019)
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 COG0614 1-396 -110.000 35  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 26-384 -25.800 15  sp|Q9H790|DEM1_HUMAN Defects in morphology protein 1 homolog OS=Homo sapiens GN=DEM1 PE=2 SV=1
HGM_OVER 187-330 -3.510 11  PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
NEW_HUMAN_DOMAINS 63-204 -5.590 12  tr|B4DQ88|B4DQ88_HUMAN Uncharacterized protein OS=Homo sapiens GN=EMR2 PE=2 SV=1 (Range: 1-160)
PDB0614 1-399 -111.000 35  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA27U 26-364 -27.700 18  PF12705.2; B5D322_9BACE/660-959; PD-(D/E)XK nuclease superfamily
SCOP175 57-292 -8.540 15  d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 137-343 -4.480 VFG2238 (gi:49476017) virB9 - virB9 protein homolog [Bartonella henselae Houston-1] (VF0369)
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 COG0614 2-141 -43.900 21  [NT] COG0835 Chemotaxis signal transduction protein
H.sapiens 14-54 -7.470 17  sp|O95411|TIAF1_HUMAN TGFB1-induced anti-apoptotic factor 1 OS=Homo sapiens GN=TIAF1 PE=2 SV=2
HGM_OVER 1-132 -3.020 14  PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)
NEW_HUMAN_DOMAINS 10-144 -5.410 sp|Q6Q759|SPG17_HUMAN Sperm-associated antigen 17 OS=Homo sapiens GN=SPAG17 PE=1 SV=1 (Range: 1642-1794)
PDB0614 2-147 -75.600 32  2ho9_A mol:protein length:167 Chemotaxis protein cheW
PfamA27U 8-143 -18.300 16  PF01584.14; Q8XQ78_RALSO/559-691; CheW-like domain
SCOP175 3-144 -62.400 29  d2ch4w1 b.40.7.1 (W:9-147) Chemotaxis protein CheW {Thermotoga maritima [TaxId: 2336]}
VFDB 2-147 -61.900 19  VFG1227 (gi:15595607) pilI - twitching motility protein PilI [Pseudomonas aeruginosa PAO1] (VF0082)
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 COG0614 2-328 -117.000 52  [F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
H.sapiens 18-306 -102.000 48  sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1 (Range: 451-750)
HGM_OVER 121-284 -3.240 13  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
NEW_HUMAN_DOMAINS 71-153 -5.090 18  sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo sapiens GN=MED13 PE=1 SV=3 (Range: 1068-1151)
PDB0614 2-331 -121.000 49  1cli_A mol:protein length:345 PROTEIN (PHOSPHORIBOSYL-AMINOIMIDAZOLE SYNTHE
PfamA27U 55-136 -11.700 23  PF00586.19; A0LIX8_SYNFM/31-128; AIR synthase related protein, N-terminal domain
SCOP175 2-165 -85.800 53  d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
166-331 -69.800 45  d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 101-288 -5.070 10  VFG1030 (gi:15808710) tnpR - resolvase TnpR [Shigella flexneri (serotype 2a) YSH6000]
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 COG0614 1-201 -98.600 35  [H] KOG3310 Riboflavin synthase alpha chain
H.sapiens 18-200 -7.760 10  sp|Q5JXA9|SIRB2_HUMAN(removed signalp:1-32) Signal-regulatory protein beta-2 OS=Homo sapiens GN=SIRPB2 PE=2 SV=1
HGM_OVER 33-174 -3.600 12  PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 6-165 -5.690 14  sp|Q9UH90|FBX40_HUMAN F-box only protein 40 OS=Homo sapiens GN=FBXO40 PE=1 SV=2 (Range: 382-551)
PDB0614 1-201 -98.600 35  1kzl_A mol:protein length:208 Riboflavin Synthase
PfamA27U 97-179 -37.900 34  PF00677.12; RISA_HAEIN/3-87; Lumazine binding domain
SCOP175 1-88 -39.800 39  d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
90-197 -54.800 33  d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
VFDB 3-185 -4.880 19  VFG1931 (gi:15792793) cadF - outer membrane fibronectin-binding protein [Campylobacter jejuni NCTC 11168] (VF0322)
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 COG0614 1-244 -93.400 18  [S] COG4200 Uncharacterized protein conserved in bacteria
H.sapiens 1-196 -14.300 13  sp|Q9H221|ABCG8_HUMAN ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1 (Range: 301-600)
3-242 -12.300 sp|Q96N19|G137A_HUMAN(removed signalp:1-43) Integral membrane protein GPR137 OS=Homo sapiens GN=GPR137 PE=2 SV=2
HGM_OVER 63-164 -5.390 12  PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;
NEW_HUMAN_DOMAINS 1-34 -5.110 11  sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3 (Range: 1428-1583)
PDB0614 1-242 -7.860 13  4htt_A mol:protein length:418 Sec-independent protein translocase protein T
PfamA27U 7-238 -75.100 14  PF12730.2; B6FXG5_9FIRM/10-245; ABC-2 family transporter protein
SCOP175 14-89 -5.370 10  d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
VFDB 4-244 -15.200 12  VFG1813 (gi:15610075) drrC - drrC [Mycobacterium tuberculosis H37Rv] (VF0309)
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 COG0614 7-322 -138.000 52  [E] COG4608 ABC-type oligopeptide transport system, ATPase component
H.sapiens 2-282 -31.300 20  sp|O94911|ABCA8_HUMAN ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3 (Range: 1201-1500)
11-254 -38.100 28  sp|Q9NRK6|ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2 (Range: 451-738)
28-238 -39.500 27  sp|Q03519|TAP2_HUMAN(removed signalp:1-28) Antigen peptide transporter 2 OS=Homo sapiens GN=TAP2 PE=1 SV=1 (Range: 451-658)
HGM_OVER 91-277 -3.500 10  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
NEW_HUMAN_DOMAINS 31-164 -5.600 19  tr|A6NNV8|A6NNV8_HUMAN Uncharacterized protein OS=Homo sapiens GN=B3GALNT2 PE=4 SV=3 (Range: 180-321)
PDB0614 8-322 -96.500 32  4fwi_B mol:protein length:334 ABC-type dipeptide/oligopeptide/nickel transp
PfamA27U 31-183 -29.600 26  PF00005.22; YTFR_ECOLI/25-174; ABC transporter
39-218 -12.500 15  PF13401.1; B2UJB3_RALPJ/42-210; AAA domain
234-301 -38.600 32  PF08352.7; A4D7W3_PROAA/243-312; Oligopeptide/dipeptide transporter, C-terminal region
SCOP175 10-254 -63.400 34  d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
VFDB 8-287 -49.900 31  VFG1206 (gi:15677997) fbpC - iron(III) ABC transporter, ATP-binding protein [Neisseria meningitidis MC58 (serogroup B)] (VF0272)
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 COG0614 2-249 -80.500 29  [S] COG1354 Uncharacterized conserved protein
H.sapiens 82-244 -13.100 sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 (Range: 451-631)
HGM_OVER 18-241 -5.990 13  PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;
NEW_HUMAN_DOMAINS 14-193 -5.850 14  sp|Q86WV6|TM173_HUMAN Transmembrane protein 173 OS=Homo sapiens GN=TMEM173 PE=1 SV=1 (Range: 110-331)
PDB0614 1-163 -79.400 41  3w6j_A mol:protein length:174 ScpA
178-243 -16.400 24  4i99_C mol:protein length:87 Putative uncharacterized protein
PfamA27U 20-244 -88.400 38  PF02616.9; SCPA_BACSU/21-245; ScpA/B protein
SCOP175 185-243 -9.000 22  d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 41-179 -6.560 14  VFG0724 (gi:2865285) rorf6 - Rorf6 [Escherichia coli E2348/69]
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 COG0614 2-335 -107.000 51  [O] COG0309 Hydrogenase maturation factor
H.sapiens 26-315 -19.900 17  sp|Q99611|SPS2_HUMAN Selenide, water dikinase 2 OS=Homo sapiens GN=SEPHS2 PE=1 SV=3
HGM_OVER 44-283 -3.060 10  PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;
NEW_HUMAN_DOMAINS 51-98 -4.730 30  sp|Q9NXD2|MTMRA_HUMAN Myotubularin-related protein 10 OS=Homo sapiens GN=MTMR10 PE=1 SV=3 (Range: 709-777)
PDB0614 2-335 -109.000 46  2z1t_A mol:protein length:343 Hydrogenase expression/formation protein HypE
PfamA27U 37-127 -18.900 20  PF00586.19; A0LIX8_SYNFM/31-128; AIR synthase related protein, N-terminal domain
162-311 -13.800 18  PF02769.17; PURL_STRCO/213-370; AIR synthase related protein, C-terminal domain
SCOP175 3-128 -12.700 13  d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]}
38-151 -63.700 50  d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
155-331 -70.900 41  d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
VFDB 73-334 -5.120 VFG2313 (gi:123443692) pilQ - putative type IV pilus protein [Yersinia enterocolitica 8081] (VF0401)
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 COG0614 1-593 -151.000 39  [L] COG0514 Superfamily II DNA helicase
1-711 -32.300 10  [R] COG1202 Superfamily II helicase, archaea-specific
H.sapiens 2-269 -80.500 39  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 1-300)
69-365 -90.800 37  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 601-900)
132-414 -88.700 33  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 151-450)
217-495 -78.800 32  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 751-1050)
272-555 -65.100 20  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 301-600)
381-643 -46.100 20  sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1 (Range: 1051-1350)
425-702 -45.000 18  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 1051-1350)
HGM_OVER 38-152 -4.000 17  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
NEW_HUMAN_DOMAINS 44-148 -5.110 13  sp|Q6ZRS4|CC129_HUMAN Coiled-coil domain-containing protein 129 OS=Homo sapiens GN=CCDC129 PE=2 SV=2 (Range: 705-836)
PDB0614 1-636 -24.400 14  2zj2_A mol:protein length:720 Putative ski2-type helicase
2-606 -142.000 33  4cdg_A mol:protein length:673 BLOOM SYNDROME PROTEIN
591-710 -20.800 16  3iuo_A mol:protein length:122 ATP-dependent DNA helicase RecQ
PfamA27U 1-356 -13.700 12  PF06862.7; Q8H1E7_ARATH/308-753; Protein of unknown function (DUF1253 topsan)
19-185 -69.900 40  PF00270.24; SGS1_YEAST/680-854; DEAD/DEAH box helicase
31-694 -12.000 12  PF02399.10; OBP_EHV1V/51-880; Origin of replication binding protein
247-324 -24.800 29  PF00271.26; O01378_BOMMO/449-526; Helicase conserved C-terminal domain
334-400 -25.700 32  PF16124; E0WT16.1/346-410; RecQ zinc-binding
406-509 -36.400 29  PF09382.5; Q9ZHY4_NEIGO/406-509; RQC domain
518-585 -34.100 38  PF00570.18; Q8G567_BIFLO/575-642; HRDC domain
615-705 -19.300 25  PF14493.1; B8DBY3_LISMH/244-329; Helix-turn-helix domain
SCOP175 1-199 -81.300 46  d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
200-401 -81.400 38  d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
402-509 -36.100 24  d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
516-592 -37.700 37  d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
VFDB 3-565 -9.430 11  VFG1093 (gi:15641763) VC1760 - helicase, putative [Vibrio cholerae N16961]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.