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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 COG0516 58-111 -9.620 16  [R] COG4797 Predicted regulatory domain of a methyltransferase
H.sapiens 53-117 -7.080 21  sp|Q2KHR3|QSER1_HUMAN Glutamine and serine-rich protein 1 OS=Homo sapiens GN=QSER1 PE=1 SV=3 (Range: 1201-1500)
HGM_OVER 12-117 -13.600 14  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
JCSG0516 55-117 -12.000 RH20529A YP_562169.1 416452 Selected-2009-12-04
NEW_HUMAN_DOMAINS 61-110 -6.290 22  sp|Q8IV32|CCD71_HUMAN Coiled-coil domain-containing protein 71 OS=Homo sapiens GN=CCDC71 PE=2 SV=3 (Range: 1-87)
PDB0516 27-113 -29.600 18  3g2b_A mol:protein length:95 Coenzyme PQQ synthesis protein D
PfamA30U 49-111 -25.200 17  PF05402.10; I3UDV1_ADVKW/25-86; Coenzyme PQQ synthesis protein D (PqqD)
SCOP206 50-117 -7.100 22  d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 61-112 -5.030 23  VFG000880(gi:26249428) (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 COG0516 46-73 -7.810 10  [UR] KOG4677 Golgi integral membrane protein
H.sapiens 29-63 -7.680 37  sp|Q96JQ2|CLMN_HUMAN Calmin OS=Homo sapiens GN=CLMN PE=1 SV=1 (Range: 751-1002)
HGM_OVER 47-72 -3.950 30  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
JCSG0516 48-68 -7.350 19  GS13154A RER070207003166 384294 Purified-2010-04-01
NEW_HUMAN_DOMAINS 39-74 -9.190 25  sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1 (Range: 280-425)
PDB0516 18-73 -5.790 17  3e1u_A mol:protein length:189 DNA dC
PfamA30U 46-73 -7.700 21  PF09787.7; W4YU02_STRPU/423-727; Golgin subfamily A member 5
SCOP206 31-65 -6.010 31  d2a06e1 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
VFDB 26-73 -5.570 20  VFG043465(gi:15903694) (pfbA) cell wall surface anchor family protein, Plasminogen- and Fibronectin-binding protein A [PfbA (VF0525)] [Streptococcus pneumoniae R6]
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 COG0516 14-443 -72.900 20  [V] COG0534 Na+-driven multidrug efflux pump
H.sapiens 13-445 -41.900 19  sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1
HGM_OVER 12-216 -3.840 12  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
JCSG0516 3-443 -92.100 23  TM0815 TM0815 282685 Purified-2004-02-02
NEW_HUMAN_DOMAINS 1-42 -4.630 19  sp|Q86UW7|CAPS2_HUMAN Calcium-dependent secretion activator 2 OS=Homo sapiens GN=CADPS2 PE=1 SV=2 (Range: 895-954)
PDB0516 1-444 -83.000 23  4mlb_A mol:protein length:492 PF0708
PfamA30U 13-337 -37.200 10  PF07260.9; F1Q528_DANRE/1-344; Progressive ankylosis protein (ANKH)
16-431 -12.800 11  PF03023.12; MURJ_ECOLI/28-479; MviN-like protein
SCOP206 2-444 -76.100 21  d5c6na_ f.61.1.1 (A:) DinF {Bacillus halodurans [TaxId: 272558]}
VFDB 12-432 -24.800 11  VFG001339(gi:22537320) (cpsL) polysaccharide biosynthesis protein CpsL [Capsule (VF0274)] [Streptococcus agalactiae 2603V/R]
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 COG0516 1-99 -77.000 55  [J] COG0199 Ribosomal protein S14
H.sapiens 1-99 -64.100 31  sp|O60783|RT14_HUMAN 28S ribosomal protein S14, mitochondrial OS=Homo sapiens GN=MRPS14 PE=1 SV=1
HGM_OVER 1-99 -4.810 PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;
JCSG0516 1-99 -36.300 47  TM1487 TM1487 283344 Purified-2001-11-13
NEW_HUMAN_DOMAINS 1-97 -5.770 16  sp|O60287|NPA1P_HUMAN Nucleolar pre-ribosomal-associated protein 1 OS=Homo sapiens GN=URB1 PE=1 SV=4 (Range: 989-1084)
PDB0516 1-99 -77.200 55  3j9y_n mol:protein length:102 30S ribosomal protein S14
PfamA30U 47-98 -33.700 46  PF00253.19; RS14Z_BEUC1/11-60; Ribosomal protein S14p/S29e
SCOP206 2-99 -75.400 55  d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
VFDB 12-98 -4.520 21  VFG007154(gi:28898438) (vscX) type III secretion system C-ring protein VscX for secretion specificity [T3SS1 (VF0408)] [Vibrio parahaemolyticus RIMD 2210633]
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 COG0516 7-113 -31.800 23  [F] COG1051 ADP-ribose pyrophosphatase
H.sapiens 6-128 -32.700 16  sp|Q96DE0|NUD16_HUMAN U8 snoRNA-decapping enzyme OS=Homo sapiens GN=NUDT16 PE=1 SV=2
HGM_OVER 31-118 -5.130 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;
JCSG0516 2-129 -57.200 22  FN2108E YP_014240.1 379463 Purified-2007-09-25
NEW_HUMAN_DOMAINS 34-60 -6.580 14  sp|Q7Z404|TMC4_HUMAN Transmembrane channel-like protein 4 OS=Homo sapiens GN=TMC4 PE=2 SV=3 (Range: 271-348)
PDB0516 1-130 -93.000 99  3gwy_A mol:protein length:140 Putative CTP pyrophosphohydrolase
PfamA30U 1-113 -31.100 27  PF00293.26; MUTT_BACSU/1-120; NUDIX domain
SCOP206 2-129 -91.300 100  d3gwya1 d.113.1.0 (A:2-129) automated matches {Bacteroides fragilis [TaxId: 272559]}
VFDB 1-72 -5.140 VFG020318(gi:16760658) (cdtB) cytolethal distending toxin B [CdtB (VF0407)] [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 COG0516 1-58 -11.600 10  [U] COG3702 Type IV secretory pathway, VirB3 components
H.sapiens 5-63 -9.570 18  sp|Q9Y6A9|SPCS1_HUMAN Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=2
HGM_OVER 1-106 -70.800 59  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
JCSG0516 19-110 -7.570 16  SP17741B ZP_02432375.1 410332 Purified-2010-09-20
NEW_HUMAN_DOMAINS 6-24 -7.300 36  sp|Q8WUU8|TM174_HUMAN Transmembrane protein 174 OS=Homo sapiens GN=TMEM174 PE=2 SV=1 (Range: 119-198)
PDB0516 9-77 -8.580 18  4y28_H mol:protein length:90 Photosystem I reaction center subunit VI
PfamA30U 6-96 -64.300 72  PF13571.4; G8UJ82_TANFA/6-96; Domain of unknown function (DUF4133 topsan)
SCOP206 20-110 -7.190 15  d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
VFDB 1-58 -13.200 17  VFG002232(gi:49476011) (virB3) type IV secretion system virB3 protein homolog [VirB/VirD4 type IV secretion system (VF0369)] [Bartonella henselae str. Houston-1]
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 COG0516 3-415 -142.000 53  [O] COG1219 ATP-dependent protease Clp, ATPase subunit
H.sapiens 3-278 -95.300 38  sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 (Range: 151-450)
128-406 -109.000 47  sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 (Range: 301-600)
HGM_OVER 68-358 -4.050 10  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
JCSG0516 7-414 -135.000 49  TM0146 TM0146 282026 Purified-2004-07-19
NEW_HUMAN_DOMAINS 73-216 -8.190 14  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0516 3-57 -24.400 32  1ovx_A mol:protein length:67 ATP-dependent Clp protease ATP-binding subuni
63-415 -128.000 55  3hte_A mol:protein length:363 ATP-dependent Clp protease ATP-binding subuni
PfamA30U 9-46 -18.700 44  PF06689.11; R6J2X8_9CLOT/11-48; ClpX C4-type zinc finger
52-381 -11.500 23  PF05496.10; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus
79-243 -12.400 22  PF01078.19; Q8EJV7_SHEON/193-396; Magnesium chelatase, subunit ChlI
SCOP206 6-48 -20.200 41  d2ds5a_ g.39.1.11 (A:) automated matches {Escherichia coli [TaxId: 562]}
62-409 -123.000 52  d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
VFDB 46-385 -14.000 25  VFG000080(gi:16803037) (clpE) ATP-dependent protease [ClpE (VF0073)] [Listeria monocytogenes EGD-e]
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 COG0516 1-339 -29.900 15  [DO] KOG1173 Anaphase-promoting complex (APC), Cdc16 subunit
8-555 -25.500 12  [Z] KOG1840 Kinesin light chain
62-330 -31.200 [U] KOG1586 Protein required for fusion of vesicles in vesicular transport, alpha-SNAP
H.sapiens 1-301 -38.900 12  sp|Q8TF17|S3TC2_HUMAN SH3 domain and tetratricopeptide repeats-containing protein 2 OS=Homo sapiens GN=SH3TC2 PE=1 SV=2 (Range: 601-900)
68-343 -35.400 12  sp|Q96NG3|TTC25_HUMAN Tetratricopeptide repeat protein 25 OS=Homo sapiens GN=TTC25 PE=1 SV=2 (Range: 301-600)
HGM_OVER 346-565 -6.910 PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;
JCSG0516 1-121 -63.300 45  SP16977A ZP_02063442.1 408380 Purified-2010-09-29
22-342 -32.400 13  MA16083B NP_033049.1 400502 Cloned-2009-03-24
66-565 -30.100 TM1314 TM1314 283178 Selected-2001-10-12
NEW_HUMAN_DOMAINS 72-198 -31.200 10  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB0516 4-327 -39.200 11  4i1a_A mol:protein length:391 Response regulator aspartate phosphatase I
19-508 -23.400 3zgq_A mol:protein length:482 INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEP
77-434 -25.600 1hz4_A mol:protein length:373 MALT REGULATORY PROTEIN
PfamA30U 6-447 -22.500 PF12569.6; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
7-310 -22.800 12  PF13429.4; Q39U81_GEOMG/198-480; Tetratricopeptide repeat
64-328 -31.900 14  PF14938.4; B8ML21_TALSN/2-284; Soluble NSF attachment protein, SNAP
286-512 -9.500 13  PF15254.4; G1T8F1_RABIT/39-892; Coiled-coil domain-containing protein 14
507-562 -9.540 14  PF00196.17; NARP_HAEIN/147-203; Bacterial regulatory proteins, luxR family
SCOP206 6-342 -24.400 13  d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase, OGT {Human (Homo sapiens) [TaxId: 9606]}
63-331 -31.700 11  d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
77-432 -24.600 d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
507-564 -15.500 13  d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
VFDB 4-557 -26.900 VFG006662(gi:15645888) (pflA) paralysed flagella protein (pflA) [Flagella (CVF223)] [Helicobacter pylori 26695]
42-347 -27.700 12  VFG045530(gi:52841882) (lpg1654) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
75-324 -31.100 13  VFG042869(gi:52841776) (pilF) type IV pilus biogenesis protein PilF [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 COG0516 3-132 -7.760 [M] COG3056 Uncharacterized lipoprotein
H.sapiens 1-32 -7.620 sp|Q13428|TCOF_HUMAN Treacle protein OS=Homo sapiens GN=TCOF1 PE=1 SV=3 (Range: 1-300)
HGM_OVER 1-51 -3.930 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG0516 1-134 -10.900 SP18611A ZP_03310651.1 410649 Purified-2010-09-29
NEW_HUMAN_DOMAINS 1-82 -6.750 13  sp|Q9UL41|PNMA3_HUMAN Paraneoplastic antigen Ma3 OS=Homo sapiens GN=PNMA3 PE=2 SV=2 (Range: 1-112)
PDB0516 1-31 -8.130 2xtc_A mol:protein length:90 F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
PfamA30U 10-156 -50.500 12  PF14137.4; A6LYB2_CLOB8/32-184; Domain of unknown function (DUF4304 topsan)
SCOP206 1-122 -6.170 d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
VFDB 1-133 -6.320 VFG044455(gi:15604762) (slc1) chaperone for TARP, CT875 [T3SS (SS001)] [Chlamydia trachomatis D/UW-3/CX]
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 COG0516 68-165 -6.810 20  [R] COG2969 Stringent starvation protein B
H.sapiens 2-206 -7.940 14  sp|P19113|DCHS_HUMAN Histidine decarboxylase OS=Homo sapiens GN=HDC PE=2 SV=2 (Range: 151-450)
HGM_OVER 31-202 -3.870 13  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
JCSG0516 10-139 -7.350 11  RH12835A NP_951781.1 416445 Selected-2009-12-04
NEW_HUMAN_DOMAINS 1-181 -6.850 13  sp|A6NCJ1|CS071_HUMAN Uncharacterized protein C19orf71 OS=Homo sapiens GN=C19orf71 PE=4 SV=2 (Range: 1-209)
PDB0516 45-198 -7.240 16  2wp7_A mol:protein length:168 PPPDE PEPTIDASE DOMAIN-CONTAINING PROTEIN 2
PfamA30U 30-139 -7.210 14  PF06232.9; Q9LVB5_ARATH/27-152; Embryo-specific protein 3, (ATS3)
SCOP206 68-165 -6.840 18  d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
VFDB 10-164 -4.730 11  VFG043338(gi:52841916) (fliK) flagellar hook-length control protein FliK [polar flagella (AI149)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 COG0516 6-309 -49.300 19  [PT] COG3712 Fe2+-dicitrate sensor, membrane component
H.sapiens 105-263 -7.610 18  sp|Q5W0A0|F194B_HUMAN Protein FAM194B OS=Homo sapiens GN=FAM194B PE=2 SV=1 (Range: 301-600)
HGM_OVER 109-208 -4.670 10  PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)
JCSG0516 1-311 -98.100 53  RH6518A ZP_02031563.1 415592 Selected-2009-12-04
NEW_HUMAN_DOMAINS 128-249 -6.800 12  sp|P38435|VKGC_HUMAN Vitamin K-dependent gamma-carboxylase OS=Homo sapiens GN=GGCX PE=1 SV=2 (Range: 505-613)
PDB0516 91-311 -73.400 28  4m0h_A mol:protein length:232 Conserved hypothetical protein, putative anti
PfamA30U 100-196 -29.500 21  PF04773.11; Q2YA72_NITMU/40-132; FecR protein
209-307 -25.800 20  PF16344.3; R7EIZ2_9BACE/288-388; Domain of unknown function (DUF4974 topsan)
SCOP206 105-261 -6.480 13  d1f0la1 b.2.1.1 (A:381-535) Diphtheria toxin, C-terminal domain {Corynebacterium diphtheriae [TaxId: 1717]}
VFDB 86-293 -6.270 11  VFG002346(gi:123442782) (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 COG0516 1-138 -82.700 34  [R] COG2166 SufE protein probably involved in Fe-S center assembly
H.sapiens 2-88 -8.150 24  sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3 (Range: 1201-1500)
HGM_OVER 38-90 -3.350 PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;
JCSG0516 1-141 -6.320 14  TM1372 TM1372 283233 Purified-2001-11-19
NEW_HUMAN_DOMAINS 19-83 -5.700 12  sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens GN=RFTN1 PE=1 SV=4 (Range: 279-388)
PDB0516 1-138 -83.000 32  1mzg_A mol:protein length:146 SufE Protein
PfamA30U 11-130 -73.900 40  PF02657.13; J7QRG4_METSZ/8-134; Fe-S metabolism associated domain
SCOP206 1-136 -81.700 30  d3g0ma_ d.224.1.1 (A:) automated matches {Salmonella typhimurium [TaxId: 99287]}
VFDB 74-127 -4.540 24  VFG000180(gi:15598297) (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 COG0516 2-225 -74.500 25  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
H.sapiens 1-156 -39.300 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
3-208 -20.300 11  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
HGM_OVER 7-207 -4.410 PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
JCSG0516 2-225 -91.900 34  TM1655 TM1655 283512 Selected-2001-10-12
NEW_HUMAN_DOMAINS 1-125 -30.300 14  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB0516 1-225 -95.200 30  1ys6_A mol:protein length:233 Transcriptional regulatory protein prrA
PfamA30U 3-109 -52.300 31  PF00072.22; RSSB_ECOLI/10-121; Response regulator receiver domain
145-222 -33.700 23  PF00486.26; I0DPC2_PROSM/145-220; Transcriptional regulatory protein, C terminal
SCOP206 1-121 -64.400 38  d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
1-165 -58.900 17  d3rqia_ c.23.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}
118-225 -44.000 21  d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 1-224 -88.000 28  VFG001386(gi:15607897) (phoP) Possible two component system response transcriptional positive regulator PhoP [PhoP (VF0286)] [Mycobacterium tuberculosis H37Rv]
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 COG0516 7-372 -31.600 19  [H] KOG2511 Nicotinic acid phosphoribosyltransferase
H.sapiens 7-372 -30.700 18  sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2
HGM_OVER 182-323 -3.140 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
JCSG0516 2-388 -119.000 32  YOR209C YOR209C 354135 PDB-2004-08-06
NEW_HUMAN_DOMAINS 235-346 -4.190 16  sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1 (Range: 2053-2142)
PDB0516 2-388 -131.000 48  2im5_A mol:protein length:394 Nicotinate phosphoribosyltransferase
PfamA30U 159-385 -93.900 40  PF04095.14; PNCB_NEIMB/171-398; Nicotinate phosphoribosyltransferase (NAPRTase) family
SCOP206 2-136 -68.100 44  d2im5a1 d.41.2.2 (A:3-137) Nicotinate phosphoribosyltransferase, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
137-387 -101.000 51  d2im5a2 c.1.17.2 (A:138-391) Nicotinate phosphoribosyltransferase, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
VFDB 9-367 -4.760 12  VFG000630(gi:24114232) (sigA) serine protease, autotransporter SigA [SigA (VF0119)] [Shigella flexneri 2a str. 301]
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 COG0516 4-244 -30.600 13  [M] COG3209 Rhs family protein
H.sapiens 4-244 -36.800 10  sp|Q6N022|TEN4_HUMAN Teneurin-4 OS=Homo sapiens GN=ODZ4 PE=2 SV=2 (Range: 1801-2100)
HGM_OVER 1-135 -11.600 10  PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;
JCSG0516 1-244 -38.600 11  SP16560A YP_210936.1 407952 Purified-2010-09-29
NEW_HUMAN_DOMAINS 2-61 -6.000 10  sp|Q9ULD6|PDZD6_HUMAN PDZ domain-containing protein 6 OS=Homo sapiens GN=INTU PE=2 SV=2 (Range: 875-942)
PDB0516 8-237 -34.900 3cka_A mol:protein length:320 Outer surface protein A
PfamA30U 10-245 -32.500 10  PF06661.9; Q2K2F2_RHIEC/43-358; VirE3
SCOP206 26-243 -6.110 11  d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
VFDB 123-239 -7.790 13  VFG000457(gi:16764499) (csgB) minor curlin subunit precursor, curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 COG0516 1-346 -61.300 26  [H] COG2073 Cobalamin biosynthesis protein CbiG
357-599 -63.200 45  [H] COG2875 Precorrin-4 methylase
H.sapiens 353-579 -21.300 15  sp|Q9H2P9|DPH5_HUMAN Diphthine synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2
HGM_OVER 243-385 -2.340 PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;
JCSG0516 1-580 -96.000 18  XB5563A 10639946 358701 Purified-2005-05-18
NEW_HUMAN_DOMAINS 67-142 -5.130 17  sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1 (Range: 1-68)
PDB0516 2-346 -55.100 21  3eeq_A mol:protein length:336 putative Cobalamin biosynthesis protein G hom
348-598 -63.700 44  4e16_A mol:protein length:253 precorrin-4 C(11)-methyltransferase
PfamA30U 45-126 -51.900 50  PF11760.6; R6GY19_9FIRM/35-116; Cobalamin synthesis G N-terminal
131-224 -30.300 46  PF11761.6; R6L2F4_9BACE/138-249; Cobalamin biosynthesis central region
227-389 -54.700 25  PF01890.14; K9VGP0_9CYAN/96-268; Cobalamin synthesis G C-terminus
353-559 -49.500 25  PF00590.18; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
SCOP206 1-227 -48.300 20  d3eeqa2 c.152.1.1 (A:10-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}
220-349 -43.300 25  d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE {Pseudomonas aeruginosa [TaxId: 287]}
353-580 -60.300 44  d1cbfa1 c.90.1.1 (A:21-251) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]}
VFDB 2-575 -4.740 VFG010682(gi:52840530) (sdbA) Dot/Icm type IV secretion system effector SdbA [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 COG0516 1-299 -27.400 12  [MOT] KOG1550 Extracellular protein SEL-1 and related proteins
75-299 -28.400 11  [R] COG0790 FOG: TPR repeat, SEL1 subfamily
H.sapiens 3-299 -30.100 sp|Q5TEA6|SE1L2_HUMAN(removed signalp:1-23) Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 (Range: 301-600)
89-299 -33.700 sp|Q5TEA6|SE1L2_HUMAN(removed signalp:1-23) Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 (Range: 1-300)
122-299 -34.500 12  sp|Q5TEA6|SE1L2_HUMAN(removed signalp:1-23) Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 (Range: 451-665)
154-299 -34.700 14  sp|Q9UBV2|SE1L1_HUMAN(removed signalp:1-21) Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 (Range: 1-300)
199-297 -36.900 15  sp|Q68CR1|SE1L3_HUMAN Protein sel-1 homolog 3 OS=Homo sapiens GN=SEL1L3 PE=1 SV=2 (Range: 901-1132)
HGM_OVER 83-295 -4.300 PB045813 Q5LF03_BACFN/1-275 PB045813; Pfam-B_45813;
JCSG0516 1-290 -10.100 11  GS13640A YP_001088498.1 384046 Purified-2010-04-06
90-299 -36.000 SP2245G ZP_03310339.1 410522 Purified-2010-09-29
219-299 -41.400 17  SP2245M YP_094930.1 412074 Purified-2010-09-29
NEW_HUMAN_DOMAINS 223-290 -10.700 11  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB0516 1-296 -9.720 10  4ui9_J mol:protein length:620 CELL DIVISION CYCLE PROTEIN 16 HOMOLOG
98-299 -33.300 10  1ouv_A mol:protein length:273 conserved hypothetical secreted protein
138-299 -35.700 12  5b26_A mol:protein length:186 Protein sel-1 homolog 1
171-299 -39.100 17  1klx_A mol:protein length:138 Cysteine Rich Protein B
PfamA30U 215-299 -11.900 10  PF17139.2; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)
242-277 -22.500 16  PF08238.10; Q74B15_GEOSL/119-154; Sel1 repeat
SCOP206 98-299 -33.300 10  d1ouva1 a.118.18.1 (A:28-290) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}
172-299 -40.100 18  d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
VFDB 89-299 -29.600 VFG041321(gi:52842435) (lpnE) Dot/Icm type IV secretion system effector LpnE [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 COG0516 307-345 -7.910 21  [J] COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation
H.sapiens 93-351 -10.400 10  sp|Q96IV0|NGLY1_HUMAN Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo sapiens GN=NGLY1 PE=1 SV=1 (Range: 1-300)
123-360 -11.200 12  sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3 OS=Homo sapiens GN=MICAL3 PE=1 SV=2 (Range: 601-900)
HGM_OVER 60-343 -6.340 11  PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]
JCSG0516 196-346 -9.110 RH20508A NP_716800.1 416408 Selected-2009-12-04
NEW_HUMAN_DOMAINS 311-360 -7.440 16  sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo sapiens GN=ADNP PE=1 SV=1 (Range: 446-529)
PDB0516 313-357 -9.130 15  2co8_A mol:protein length:82 NEDD9 interacting protein with calponin homol
PfamA30U 246-360 -7.880 18  PF15616.4; Q5NWS3_AROAE/221-349; TerY-C metal binding domain
SCOP206 311-348 -6.940 21  d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA) {Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}
VFDB 107-350 -5.800 VFG002358(gi:123442806) (flhC) flagellar biosynthesis transcription activator FlhC [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 COG0516 5-66 -4.870 [S] COG5458 Uncharacterized conserved protein
H.sapiens 3-46 -6.630 13  sp|Q92838|EDA_HUMAN Ectodysplasin-A OS=Homo sapiens GN=EDA PE=1 SV=2
HGM_OVER 2-36 -3.860 17  HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;
JCSG0516 15-57 -5.570 20  SC.B21098B NP_687844.1 427863 Selected-2013-01-04
NEW_HUMAN_DOMAINS 28-67 -5.340 27  sp|Q6ZQQ6|WDR87_HUMAN WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=2 SV=3 (Range: 636-715)
PDB0516 4-63 -7.040 26  4f8b_A mol:protein length:165 NADPH-dependent 7-cyano-7-deazaguanine reduct
PfamA30U 4-52 -7.020 14  PF16845.3; B9HCU3_POPTR/31-111; Aspartic acid proteinase inhibitor
SCOP206 4-48 -5.740 15  d3imab_ d.17.1.0 (B:) automated matches {Colocasia esculenta [TaxId: 4460]}
VFDB 45-70 -4.210 23  VFG002353(gi:123442789) (flgM) negative regulator of flagellin synthesis [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 COG0516 20-210 -39.700 16  [R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats
H.sapiens 1-214 -10.900 15  sp|Q96P20|NALP3_HUMAN NACHT, LRR and PYD domains-containing protein 3 OS=Homo sapiens GN=NLRP3 PE=1 SV=3 (Range: 751-1036)
20-203 -37.600 14  sp|Q7L273|KCTD9_HUMAN BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9 PE=2 SV=1
HGM_OVER 135-221 -5.170 13  PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;
JCSG0516 22-220 -41.100 15  C.LS4548A NP_420698.1 423807 Selected-2011-09-02
NEW_HUMAN_DOMAINS 101-221 -10.800 sp|Q9H9S0|NANOG_HUMAN Homeobox protein NANOG OS=Homo sapiens GN=NANOG PE=1 SV=2 (Range: 177-305)
PDB0516 6-218 -86.600 24  2w7z_A mol:protein length:214 PENTAPEPTIDE REPEAT FAMILY PROTEIN
PfamA30U 6-221 -12.100 PF12541.6; R6DEH5_9CLOT/2-276; Protein of unknown function (DUF3737 topsan)
101-181 -34.600 59  PF13599.4; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)
SCOP206 40-219 -58.100 21  d2bm5a_ b.80.8.1 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
VFDB 5-209 -41.000 14  VFG002483(gi:53722527) (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]


FFAS is supported by the NIH grant R01-GM087218-01
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Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.