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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 COG0614 58-111 -8.510 16  [R] COG4797 Predicted regulatory domain of a methyltransferase
H.sapiens 53-117 -7.070 21  sp|Q2KHR3|QSER1_HUMAN Glutamine and serine-rich protein 1 OS=Homo sapiens GN=QSER1 PE=1 SV=3 (Range: 1201-1500)
HGM_OVER 56-117 -8.940 17  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
NEW_HUMAN_DOMAINS 68-107 -6.300 12  sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens GN=BAZ2B PE=1 SV=3 (Range: 1706-1785)
PDB0614 22-113 -27.700 17  3g2b_A mol:protein length:95 Coenzyme PQQ synthesis protein D
PfamA27U 49-112 -23.400 17  PF05402.7; D8JXT8_HYPDA/33-99; Coenzyme PQQ synthesis protein D (PqqD)
SCOP175 61-100 -6.820 12  d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 58-107 -6.170 16  VFG0779 (gi:11527923) rorf6 - unknown [Escherichia coli E2348/69]
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 COG0614 46-73 -8.520 10  [UR] KOG4677 Golgi integral membrane protein
H.sapiens 46-74 -7.610 17  sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3 (Range: 451-731)
HGM_OVER 47-72 -5.180 30  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
NEW_HUMAN_DOMAINS 30-74 -10.400 26  sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1 (Range: 280-425)
PDB0614 39-73 -5.940 17  2wwb_C mol:protein length:96 PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA
PfamA27U 33-71 -6.670 38  PF03616.9; Q9KNC4_VIBCH/5-376; Sodium/glutamate symporter
SCOP175 31-66 -6.210 30  d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
VFDB 15-73 -5.060 28  VFG1634 (gi:14594868) orf11 - hypothetical protein [Escherichia coli 536]
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 COG0614 14-443 -68.900 20  [V] COG0534 Na+-driven multidrug efflux pump
H.sapiens 13-446 -46.500 19  sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1
HGM_OVER 1-189 -4.110 13  PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
NEW_HUMAN_DOMAINS 1-42 -5.130 19  sp|Q86UW7|CAPS2_HUMAN Calcium-dependent secretion activator 2 OS=Homo sapiens GN=CADPS2 PE=1 SV=2 (Range: 895-954)
PDB0614 2-445 -81.600 23  4mlb_A mol:protein length:492 PF0708
PfamA27U 13-337 -29.100 PF07260.6; Q6NS07_XENLA/1-345; Progressive ankylosis protein (ANKH)
16-431 -13.800 11  PF03023.9; MURJ_ECOLI/28-479; MviN-like protein
SCOP175 34-313 -4.340 d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]}
VFDB 1-432 -23.600 11  VFG1339 (gi:22537320) cpsL - polysaccharide biosynthesis protein CpsL [Streptococcus agalactiae 2603V/R] (VF0274)
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 COG0614 1-99 -77.100 55  [J] COG0199 Ribosomal protein S14
H.sapiens 1-99 -65.100 31  sp|O60783|RT14_HUMAN 28S ribosomal protein S14, mitochondrial OS=Homo sapiens GN=MRPS14 PE=1 SV=1
HGM_OVER 5-98 -4.370 11  HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
NEW_HUMAN_DOMAINS 21-99 -6.100 22  sp|O76015|KRT38_HUMAN Keratin, type I cuticular Ha8 OS=Homo sapiens GN=KRT38 PE=2 SV=3 (Range: 1-96)
PDB0614 1-99 -77.100 55  1vs5_N mol:protein length:101 30S RIBOSOMAL PROTEIN S14
PfamA27U 44-97 -43.100 35  PF00253.16; Q6FQ77_CANGA/59-113; Ribosomal protein S14p/S29e
SCOP175 2-99 -75.600 55  d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
VFDB 67-99 -5.110 21  VFG1141 (gi:15641811) VC1809 - transcriptional regulator, putative [Vibrio cholerae N16961]
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 COG0614 7-113 -31.200 21  [F] COG1051 ADP-ribose pyrophosphatase
H.sapiens 5-128 -34.500 16  sp|Q96DE0|NUD16_HUMAN U8 snoRNA-decapping enzyme OS=Homo sapiens GN=NUDT16 PE=1 SV=2
HGM_OVER 2-86 -4.720 11  HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;
NEW_HUMAN_DOMAINS 35-130 -7.140 14  tr|E9PHF9|E9PHF9_HUMAN Uncharacterized protein OS=Homo sapiens GN=POLE PE=4 SV=1 (Range: 1-134)
PDB0614 1-130 -97.300 99  3gwy_A mol:protein length:140 Putative CTP pyrophosphohydrolase
PfamA27U 1-115 -24.200 14  PF16262; F3NJH4.1/6-177; Domain of unknown function (DUF4916 topsan)
SCOP175 1-129 -66.900 25  d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}
VFDB 51-126 -5.730 VFG1687 (gi:28316267) orf64 - hypothetical protein [Escherichia coli 536]
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 COG0614 6-101 -7.220 18  [K] KOG3743 Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5)
H.sapiens 1-109 -10.200 15  sp|Q8N3S3|PHTF2_HUMAN Putative homeodomain transcription factor 2 OS=Homo sapiens GN=PHTF2 PE=2 SV=2 (Range: 301-600)
HGM_OVER 1-106 -81.500 59  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
NEW_HUMAN_DOMAINS 1-91 -7.830 10  tr|Q5T051|Q5T051_HUMAN Solute carrier family 22 (Organic anion transporter), member 7 (Fragment) OS=Homo sapiens GN=SLC22A7 PE=2 SV=1 (Range: 1-90)
PDB0614 6-110 -7.410 13  3pnr_B mol:protein length:187 PbICP-C
PfamA27U 6-101 -77.700 71  PF13571.1; B6W538_9BACE/6-101; Domain of unknown function (DUF4133 topsan)
SCOP175 10-87 -6.310 13  d2awna1 b.40.6.3 (A:236-370) Maltose transport protein MalK, C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 1-46 -8.700 21  VFG2232 (gi:49476011) virB3 - virB3 protein homolog [Bartonella henselae Houston-1] (VF0369)
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 COG0614 2-415 -135.000 53  [O] COG1219 ATP-dependent protease Clp, ATPase subunit
H.sapiens 3-278 -90.300 39  sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 (Range: 151-450)
128-406 -109.000 47  sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 (Range: 301-600)
HGM_OVER 111-160 -3.560 20  HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;
NEW_HUMAN_DOMAINS 73-189 -5.580 16  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0614 3-57 -23.000 32  1ovx_A mol:protein length:67 ATP-dependent Clp protease ATP-binding subuni
63-415 -129.000 55  3hte_A mol:protein length:363 ATP-dependent Clp protease ATP-binding subuni
PfamA27U 8-47 -18.100 40  PF06689.8; CLPX_RHOFD/12-51; ClpX C4-type zinc finger
52-381 -11.700 23  PF05496.7; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus
79-260 -13.100 22  PF01078.16; Q8EJV7_SHEON/193-396; Magnesium chelatase, subunit ChlI
SCOP175 9-45 -16.900 45  d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
62-409 -125.000 52  d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
VFDB 58-384 -13.800 25  VFG0080 (gi:16803037) clpE - ATP-dependent protease [Listeria monocytogenes (serovar 1/2a) EGD-e] (VF0073)
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 COG0614 4-565 -21.700 10  [S] KOG4648 Uncharacterized conserved protein, contains LRR repeats
24-348 -27.700 15  [DO] KOG1173 Anaphase-promoting complex (APC), Cdc16 subunit
24-429 -23.900 14  [Z] KOG1840 Kinesin light chain
51-330 -28.100 [U] KOG1586 Protein required for fusion of vesicles in vesicular transport, alpha-SNAP
H.sapiens 1-300 -34.700 12  sp|Q8TF17|S3TC2_HUMAN SH3 domain and tetratricopeptide repeats-containing protein 2 OS=Homo sapiens GN=SH3TC2 PE=1 SV=2 (Range: 601-900)
68-319 -34.900 13  sp|Q96NG3|TTC25_HUMAN Tetratricopeptide repeat protein 25 OS=Homo sapiens GN=TTC25 PE=1 SV=2 (Range: 301-600)
93-314 -35.900 15  sp|Q8TF17|S3TC2_HUMAN SH3 domain and tetratricopeptide repeats-containing protein 2 OS=Homo sapiens GN=SH3TC2 PE=1 SV=2 (Range: 1051-1288)
96-390 -28.100 11  sp|P54920|SNAA_HUMAN Alpha-soluble NSF attachment protein OS=Homo sapiens GN=NAPA PE=1 SV=3
100-351 -31.700 sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4 (Range: 1051-1350)
HGM_OVER 351-565 -4.360 PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;
NEW_HUMAN_DOMAINS 72-197 -26.000 10  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB0614 6-565 -17.900 10  4hnw_A mol:protein length:863 N-terminal acetyltransferase A complex subuni
16-344 -33.000 11  4i1a_A mol:protein length:391 Response regulator aspartate phosphatase I
19-508 -21.300 3zgq_A mol:protein length:482 INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEP
71-317 -33.100 14  4gyo_A mol:protein length:373 Response regulator aspartate phosphatase J
76-420 -21.400 10  1hz4_A mol:protein length:373 MALT REGULATORY PROTEIN
79-237 -34.200 16  3ro3_A mol:protein length:164 G-protein-signaling modulator 2
PfamA27U 4-430 -18.800 11  PF12569.3; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
63-328 -30.800 13  PF14938.1; C5YKG9_SORBI/6-279; Soluble NSF attachment protein, SNAP
SCOP175 16-310 -21.400 10  d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
50-330 -29.000 11  d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
76-418 -21.400 d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
506-564 -11.700 13  d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
VFDB 4-415 -20.000 11  VFG1928 (gi:15792870) pflA - paralysed flagellum protein [Campylobacter jejuni NCTC 11168] (VF0114)
50-316 -26.900 12  VFG1217 (gi:15599000) pilF - type 4 fimbrial biogenesis protein PilF [Pseudomonas aeruginosa PAO1] (VF0082)
507-564 -11.900 VFG0451 (gi:16763932) fimW - putative fimbrial protein [Salmonella enterica (serovar typhimurium) LT2] (VF0102)
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 COG0614 3-133 -7.240 [M] COG3056 Uncharacterized lipoprotein
H.sapiens 5-141 -7.650 12  sp|Q5T011|SZT2_HUMAN Protein SZT2 OS=Homo sapiens GN=SZT2 PE=2 SV=3 (Range: 301-600)
HGM_OVER 1-51 -3.850 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
NEW_HUMAN_DOMAINS 1-86 -7.060 sp|Q9UL42|PNMA2_HUMAN Paraneoplastic antigen Ma2 OS=Homo sapiens GN=PNMA2 PE=1 SV=2 (Range: 1-118)
PDB0614 1-31 -8.270 2xtc_A mol:protein length:90 F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
PfamA27U 10-141 -46.600 12  PF14137.1; A6LYB2_CLOB8/32-182; Domain of unknown function (DUF4304 topsan)
SCOP175 2-48 -6.340 d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
VFDB 2-48 -6.580 12  VFG1721 (gi:26249435) c3600 - Hypothetical protein [Escherichia coli CFT073]
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 COG0614 68-165 -6.340 20  [R] COG2969 Stringent starvation protein B
H.sapiens 33-134 -7.870 19  sp|Q30KQ8|DB112_HUMAN Beta-defensin 112 OS=Homo sapiens GN=DEFB112 PE=2 SV=1
HGM_OVER 127-178 -5.210 19  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
NEW_HUMAN_DOMAINS 92-161 -7.070 15  sp|Q9H6R7|CB044_HUMAN WD repeat-containing protein C2orf44 OS=Homo sapiens GN=C2orf44 PE=1 SV=1 (Range: 595-671)
PDB0614 23-204 -7.510 13  3u9l_A mol:protein length:324 3-oxoacyl-[acyl-carrier-protein] reductase
PfamA27U 8-96 -7.120 24  PF07101.6; Q8WPR8_9TRYP/1-124; Protein of unknown function (DUF1363 topsan)
SCOP175 19-109 -6.760 14  d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]}
VFDB 13-140 -4.700 15  VFG0722 (gi:2865283) cesD - CesD, chaperone for EspD and EspB [Escherichia coli E2348/69] (VF0172)
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 COG0614 6-309 -47.000 18  [PT] COG3712 Fe2+-dicitrate sensor, membrane component
H.sapiens 95-305 -7.080 sp|Q96DT0|LEG12_HUMAN Galectin-12 OS=Homo sapiens GN=LGALS12 PE=1 SV=1
HGM_OVER 96-306 -3.920 13  PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;
NEW_HUMAN_DOMAINS 105-307 -6.260 14  sp|Q5W0A0|F194B_HUMAN Protein FAM194B OS=Homo sapiens GN=FAM194B PE=2 SV=1 (Range: 457-696)
PDB0614 93-311 -68.900 29  4m0h_A mol:protein length:232 Conserved hypothetical protein, putative anti
PfamA27U 100-196 -30.600 21  PF04773.8; Q2YA72_NITMU/40-132; FecR protein
209-308 -23.600 31  PF16344; Q8A6K5.1/234-336; Domain of unknown function (DUF4974 topsan)
SCOP175 106-261 -7.400 13  d1f0la1 b.2.1.1 (A:381-535) Diphtheria toxin, C-terminal domain {Corynebacterium diphtheriae [TaxId: 1717]}
VFDB 6-301 -43.100 18  VFG1048 (gi:15808728) fecR - FecR [Shigella flexneri (serotype 2a) YSH6000]
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 COG0614 1-138 -83.000 34  [R] COG2166 SufE protein probably involved in Fe-S center assembly
H.sapiens 2-88 -8.340 26  sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3 (Range: 1201-1500)
HGM_OVER 53-141 -3.670 15  PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;
NEW_HUMAN_DOMAINS 52-100 -5.120 16  sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1 SV=3 (Range: 415-482)
PDB0614 1-138 -82.200 32  1mzg_A mol:protein length:146 SufE Protein
PfamA27U 10-132 -72.500 31  PF02657.10; YGDK_ECOLI/20-145; Fe-S metabolism associated domain
SCOP175 3-142 -81.300 31  d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
VFDB 74-127 -4.660 24  VFG0180 (gi:15598297) xcpT - general secretion pathway protein G [Pseudomonas aeruginosa PAO1] (VF0084)
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 COG0614 2-225 -79.600 25  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
H.sapiens 3-156 -42.100 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
3-208 -18.700 11  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
HGM_OVER 7-214 -4.790 PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
NEW_HUMAN_DOMAINS 1-158 -38.000 10  sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB0614 1-225 -95.000 30  1ys6_A mol:protein length:233 Transcriptional regulatory protein prrA
PfamA27U 3-113 -28.000 29  PF00072.19; AGMR_PSEAE/4-117; Response regulator receiver domain
145-222 -28.900 25  PF00486.23; O85058_PROST/114-189; Transcriptional regulatory protein, C terminal
SCOP175 1-121 -62.000 38  d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
118-225 -43.200 21  d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 1-225 -95.200 30  VFG1389 (gi:15608043) prrA - hypothetical protein Rv0903c [Mycobacterium tuberculosis H37Rv]
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 COG0614 7-372 -27.500 19  [H] KOG2511 Nicotinic acid phosphoribosyltransferase
H.sapiens 7-372 -26.600 18  sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2
HGM_OVER 259-315 -2.830 14  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
NEW_HUMAN_DOMAINS 235-346 -4.300 16  sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1 (Range: 2053-2142)
PDB0614 2-388 -135.000 48  2im5_A mol:protein length:394 Nicotinate phosphoribosyltransferase
PfamA27U 160-372 -23.100 21  PF04095.11; O23191_ARATH/174-402; Nicotinate phosphoribosyltransferase (NAPRTase) family
SCOP175 2-135 -58.600 29  d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
137-387 -95.200 33  d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 167-349 -7.890 11  VFG1666 (gi:28316246) orf43 - hypothetical protein [Escherichia coli 536]
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 COG0614 8-244 -35.100 12  [M] COG3209 Rhs family protein
H.sapiens 4-244 -41.600 sp|Q6N022|TEN4_HUMAN Teneurin-4 OS=Homo sapiens GN=ODZ4 PE=2 SV=2 (Range: 1801-2100)
HGM_OVER 16-113 -7.320 PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;
NEW_HUMAN_DOMAINS 1-37 -5.950 21  tr|F8WAL8|F8WAL8_HUMAN Uncharacterized protein OS=Homo sapiens GN=IQCH PE=4 SV=1 (Range: 634-696)
PDB0614 8-244 -42.400 2fkj_A mol:protein length:366 Outer Surface Protein A
PfamA27U 4-245 -34.900 11  PF06788.8; Q57PD7_SALCH/4-239; Uncharacterised protein family (UPF0257 topsan)
SCOP175 9-235 -8.120 10  d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
VFDB 120-239 -8.990 13  VFG0457 (gi:16764499) csgB - minor curlin subunit precursor, nucleator for assembly of adhesive surface organelles [Salmonella enterica (serovar typhimurium) LT2] (VF0103)
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 COG0614 1-346 -53.000 26  [H] COG2073 Cobalamin biosynthesis protein CbiG
357-599 -94.600 45  [H] COG2875 Precorrin-4 methylase
H.sapiens 353-580 -34.300 14  sp|Q9H2P9|DPH5_HUMAN Diphthine synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2
HGM_OVER 260-458 -3.370 14  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
NEW_HUMAN_DOMAINS 313-516 -6.070 12  sp|Q8TCI5|CA088_HUMAN Uncharacterized protein C1orf88 OS=Homo sapiens GN=C1orf88 PE=2 SV=2 (Range: 1-191)
PDB0614 1-347 -47.000 21  3eeq_A mol:protein length:336 putative Cobalamin biosynthesis protein G hom
350-598 -94.700 44  4e16_A mol:protein length:253 precorrin-4 C(11)-methyltransferase
PfamA27U 43-126 -50.800 45  PF11760.3; Q6ARS3_DESPS/35-118; Cobalamin synthesis G N-terminal
132-227 -37.000 13  PF11761.3; A8FV20_SHESH/134-234; Cobalamin biosynthesis central region
227-343 -30.600 30  PF01890.11; A1AU03_PELPD/230-350; Cobalamin synthesis G C-terminus
353-558 -20.800 18  PF00590.15; A1AUS5_PELPD/5-191; Tetrapyrrole (Corrin/Porphyrin) Methylases
SCOP175 1-167 -43.800 24  d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}
219-343 -28.800 26  d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE {Pseudomonas aeruginosa [TaxId: 287]}
350-580 -91.100 44  d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]}
VFDB 58-579 -4.300 10  VFG1407 (gi:15610067) fadD26 - fadD26 [Mycobacterium tuberculosis H37Rv] (VF0309)
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 COG0614 3-299 -25.600 [MOT] KOG1550 Extracellular protein SEL-1 and related proteins
75-299 -30.200 10  [R] COG0790 FOG: TPR repeat, SEL1 subfamily
H.sapiens 30-299 -35.500 sp|P41002|CCNF_HUMAN Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2 (Range: 1-300)
83-299 -37.600 10  sp|Q9UBV2|SE1L1_HUMAN(removed signalp:1-21) Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 (Range: 1-300)
122-299 -38.300 12  sp|Q5TEA6|SE1L2_HUMAN(removed signalp:1-23) Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 (Range: 451-665)
200-299 -39.800 16  sp|Q9UBV2|SE1L1_HUMAN(removed signalp:1-21) Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 (Range: 601-773)
HGM_OVER 73-296 -4.070 12  PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;
NEW_HUMAN_DOMAINS 224-296 -9.520 11  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB0614 75-299 -37.900 10  1ouv_A mol:protein length:273 conserved hypothetical secreted protein
209-299 -38.400 19  1klx_A mol:protein length:138 Cysteine Rich Protein B
PfamA27U 223-299 -10.900 PF12688.2; A5CSW9_CLAM3/39-160; Tetratrico peptide repeat
242-277 -22.400 22  PF08238.7; Q5PFP4_SALPA/166-201; Sel1 repeat
SCOP175 75-299 -36.600 10  d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}
221-299 -39.500 20  d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
VFDB 93-297 -30.300 VFG0125 (gi:15598739) algK - alginate biosynthesis protein Alg44 [Pseudomonas aeruginosa PAO1] (VF0091)
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 COG0614 307-345 -8.320 21  [J] COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation
H.sapiens 123-360 -12.100 11  sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3 OS=Homo sapiens GN=MICAL3 PE=1 SV=2 (Range: 601-900)
HGM_OVER 60-343 -5.530 11  PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]
NEW_HUMAN_DOMAINS 251-360 -7.500 11  sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 (Range: 553-630)
PDB0614 313-357 -10.300 15  2co8_A mol:protein length:82 NEDD9 interacting protein with calponin homol
PfamA27U 268-342 -8.580 12  PF12898.2; C4JV70_UNCRE/69-154; Stc1 domain
SCOP175 306-350 -7.840 20  d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
VFDB 309-345 -7.660 14  VFG1690 (gi:28316270) orf67 - truncated InsA protein [Escherichia coli 536]
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 COG0614 19-71 -5.120 17  [Z] KOG2826 Actin-related protein Arp2/3 complex, subunit ARPC2
H.sapiens 45-70 -6.070 23  sp|Q9NYF0|DACT1_HUMAN Dapper homolog 1 OS=Homo sapiens GN=DACT1 PE=2 SV=2 (Range: 451-750)
HGM_OVER 7-70 -5.050 18  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
NEW_HUMAN_DOMAINS 33-71 -5.590 20  tr|E9PQV5|E9PQV5_HUMAN Uncharacterized protein OS=Homo sapiens GN=CCDC37 PE=4 SV=1 (Range: 55-117)
PDB0614 4-56 -7.510 13  2w9p_A mol:protein length:87 MULTICYSTATIN
PfamA27U 16-71 -7.390 23  PF14489.1; D1N404_9BACT/62-142; QueF-like protein
SCOP175 4-48 -5.390 d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]}
VFDB 45-70 -4.060 23  VFG2353 (gi:123442789) flgM - negative regulator of flagellin synthesis [Yersinia enterocolitica 8081] (VF0394)
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 COG0614 20-204 -40.600 16  [R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats
H.sapiens 20-214 -39.400 13  sp|Q7L273|KCTD9_HUMAN BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9 PE=2 SV=1
HGM_OVER 113-221 -5.580 15  PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;
NEW_HUMAN_DOMAINS 147-204 -6.820 17  sp|Q6ZQX7|CQ097_HUMAN Uncharacterized protein C17orf97 OS=Homo sapiens GN=C17orf97 PE=2 SV=2 (Range: 302-359)
PDB0614 9-218 -91.600 25  2w7z_A mol:protein length:214 PENTAPEPTIDE REPEAT FAMILY PROTEIN
PfamA27U 33-221 -10.100 12  PF12541.3; C4ZDA1_EUBR3/4-281; Protein of unknown function (DUF3737 topsan)
58-166 -11.600 16  PF01696.12; E1BL_ADE12/96-479; Adenovirus EB1 55K protein / large t-antigen
73-200 -11.400 PF16318; D7IDS3.1/184-486; Domain of unknown function (DUF4957 topsan)
75-152 -32.500 33  PF13599.1; A5FH08_FLAJ1/44-123; Pentapeptide repeats (9 copies)
SCOP175 42-219 -58.100 21  d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 1-221 -12.700 10  VFG0468 (gi:16765569) sspH2 - Leucine-rich repeat protein, induced by the SPI-2 regulator ssrA/B [Salmonella enterica (serovar typhimurium) LT2]
19-203 -35.300 16  VFG0589 (gi:16764446) pipB - Pathogenicity island encoded protein: SPI3 [Salmonella enterica (serovar typhimurium) LT2]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.