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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 COG1214 58-112 -8.660 16  [R] COG4797 Predicted regulatory domain of a methyltransferase
H.sapiens 60-113 -7.050 17  sp|P46531|NOTC1_HUMAN(removed signalp:1-18) Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4 (Range: 1651-1950)
HGM_OVER 56-117 -13.500 17  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
JCSG1214 3-117 -10.200 RH20215A YP_001300979.1 415765 Selected-2009-12-04
NEW_HUMAN_DOMAINS 4-98 -6.490 11  sp|Q9UJX4|APC5_HUMAN Anaphase-promoting complex subunit 5 OS=Homo sapiens GN=ANAPC5 PE=1 SV=2 (Range: 354-458)
PDB1214 24-113 -30.000 17  3g2b_A mol:protein length:95 Coenzyme PQQ synthesis protein D
PfamA27U 50-112 -25.800 17  PF05402.7; D8JXT8_HYPDA/33-99; Coenzyme PQQ synthesis protein D (PqqD)
SCOP175 61-117 -8.030 14  d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 61-117 -6.010 21  VFG0880 (gi:26249428) papI - PapI protein [Escherichia coli CFT073] (VF0220)
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 COG1214 47-73 -8.430 11  [UR] KOG4677 Golgi integral membrane protein
H.sapiens 46-74 -7.570 17  sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3 (Range: 451-731)
HGM_OVER 47-72 -4.640 30  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
JCSG1214 47-73 -7.900 25  SP17772A ZP_02422086.1 411233 Purified-2013-03-18
NEW_HUMAN_DOMAINS 39-74 -8.970 25  sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1 (Range: 280-425)
PDB1214 39-73 -5.680 17  2wwb_C mol:protein length:96 PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA
PfamA27U 20-42 -6.660 30  PF15217.1; E2QWD9_CANFA/1-180; TSC21 family
SCOP175 31-66 -6.100 30  d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
VFDB 15-73 -5.010 28  VFG1634 (gi:14594868) orf11 - hypothetical protein [Escherichia coli 536]
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 COG1214 14-443 -69.300 20  [V] COG0534 Na+-driven multidrug efflux pump
H.sapiens 13-446 -44.000 19  sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1
HGM_OVER 12-216 -4.630 14  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
JCSG1214 2-443 -84.300 23  TM0815 TM0815 282685 Purified-2004-02-02
NEW_HUMAN_DOMAINS 20-54 -4.920 sp|Q86UX2|ITIH5_HUMAN Inter-alpha-trypsin inhibitor heavy chain H5 OS=Homo sapiens GN=ITIH5 PE=2 SV=2 (Range: 492-581)
PDB1214 2-444 -81.400 23  4mlb_A mol:protein length:492 PF0708
PfamA27U 4-336 -43.900 PF07260.6; Q6NS07_XENLA/1-345; Progressive ankylosis protein (ANKH)
16-431 -15.400 11  PF03023.9; MURJ_ECOLI/28-479; MviN-like protein
SCOP175 34-313 -5.600 d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]}
VFDB 12-432 -23.700 11  VFG1339 (gi:22537320) cpsL - polysaccharide biosynthesis protein CpsL [Streptococcus agalactiae 2603V/R] (VF0274)
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 COG1214 1-99 -75.300 55  [J] COG0199 Ribosomal protein S14
H.sapiens 1-99 -63.600 31  sp|O60783|RT14_HUMAN 28S ribosomal protein S14, mitochondrial OS=Homo sapiens GN=MRPS14 PE=1 SV=1
HGM_OVER 5-98 -3.770 11  HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
JCSG1214 41-99 -40.200 43  TM1487 TM1487 283344 Purified-2001-11-13
NEW_HUMAN_DOMAINS 1-99 -5.330 12  sp|Q9NS62|THSD1_HUMAN Thrombospondin type-1 domain-containing protein 1 OS=Homo sapiens GN=THSD1 PE=1 SV=1 (Range: 23-172)
PDB1214 2-99 -73.700 55  2ykr_N mol:protein length:100 30S RIBOSOMAL PROTEIN S14
PfamA27U 44-97 -42.200 35  PF00253.16; Q6FQ77_CANGA/59-113; Ribosomal protein S14p/S29e
SCOP175 2-99 -73.700 55  d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
VFDB 67-99 -5.130 21  VFG1141 (gi:15641811) VC1809 - transcriptional regulator, putative [Vibrio cholerae N16961]
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 COG1214 7-113 -35.100 22  [F] COG1051 ADP-ribose pyrophosphatase
H.sapiens 3-130 -36.600 21  sp|P0C025|NUD17_HUMAN Nucleoside diphosphate-linked moiety X motif 17 OS=Homo sapiens GN=NUDT17 PE=2 SV=2
HGM_OVER 1-62 -5.300 PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;
JCSG1214 1-129 -58.800 24  FN2108E YP_014240.1 379463 Purified-2007-09-25
NEW_HUMAN_DOMAINS 31-127 -8.470 13  tr|Q5VUY5|Q5VUY5_HUMAN Chromosome 1 open reading frame 158 OS=Homo sapiens GN=C1orf158 PE=2 SV=1 (Range: 1-108)
PDB1214 1-130 -92.400 99  3gwy_A mol:protein length:140 Putative CTP pyrophosphohydrolase
PfamA27U 1-115 -28.100 14  PF16262; F3NJH4.1/6-177; Domain of unknown function (DUF4916 topsan)
SCOP175 1-129 -72.500 25  d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}
VFDB 51-126 -5.660 10  VFG1687 (gi:28316267) orf64 - hypothetical protein [Escherichia coli 536]
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 COG1214 1-58 -12.400 10  [U] COG3702 Type IV secretory pathway, VirB3 components
5-110 -10.200 [U] KOG4112 Signal peptidase subunit
H.sapiens 5-63 -9.960 18  sp|Q9Y6A9|SPCS1_HUMAN Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=2
HGM_OVER 1-106 -68.100 59  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
JCSG1214 19-110 -6.880 16  SP17741B ZP_02432375.1 410332 Purified-2010-09-20
NEW_HUMAN_DOMAINS 6-24 -7.800 36  sp|Q8WUU8|TM174_HUMAN Transmembrane protein 174 OS=Homo sapiens GN=TMEM174 PE=2 SV=1 (Range: 119-198)
PDB1214 9-46 -7.110 26  1kvd_A mol:protein length:63 SMK TOXIN
PfamA27U 6-101 -65.500 71  PF13571.1; B6W538_9BACE/6-101; Domain of unknown function (DUF4133 topsan)
SCOP175 1-69 -5.900 14  d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 1-58 -13.900 17  VFG2232 (gi:49476011) virB3 - virB3 protein homolog [Bartonella henselae Houston-1] (VF0369)
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 COG1214 2-415 -136.000 53  [O] COG1219 ATP-dependent protease Clp, ATPase subunit
H.sapiens 3-278 -97.700 38  sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 (Range: 151-450)
128-406 -107.000 47  sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 (Range: 301-600)
HGM_OVER 111-160 -3.570 20  HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;
JCSG1214 7-414 -136.000 49  TM0146 TM0146 282026 Purified-2004-07-19
NEW_HUMAN_DOMAINS 73-189 -6.270 16  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB1214 3-57 -24.400 32  1ovx_A mol:protein length:67 ATP-dependent Clp protease ATP-binding subuni
57-414 -127.000 50  1um8_A mol:protein length:376 ATP-dependent Clp protease ATP-binding subuni
PfamA27U 8-47 -19.300 40  PF06689.8; CLPX_RHOFD/12-51; ClpX C4-type zinc finger
52-381 -11.200 22  PF05496.7; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus
79-243 -12.600 22  PF01078.16; Q8EJV7_SHEON/193-396; Magnesium chelatase, subunit ChlI
SCOP175 9-45 -18.000 45  d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
62-409 -127.000 52  d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
VFDB 58-384 -13.800 25  VFG0080 (gi:16803037) clpE - ATP-dependent protease [Listeria monocytogenes (serovar 1/2a) EGD-e] (VF0073)
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 COG1214 4-556 -25.600 [U] KOG2376 Signal recognition particle, subunit Srp72
16-328 -28.500 15  [T] KOG1130 Predicted G-alpha GTPase interaction protein, contains GoLoco domain
62-330 -32.100 [U] KOG1586 Protein required for fusion of vesicles in vesicular transport, alpha-SNAP
H.sapiens 1-301 -38.500 12  sp|Q8TF17|S3TC2_HUMAN SH3 domain and tetratricopeptide repeats-containing protein 2 OS=Homo sapiens GN=SH3TC2 PE=1 SV=2 (Range: 601-900)
68-343 -37.300 13  sp|Q96NG3|TTC25_HUMAN Tetratricopeptide repeat protein 25 OS=Homo sapiens GN=TTC25 PE=1 SV=2 (Range: 301-600)
HGM_OVER 346-565 -7.300 PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;
JCSG1214 1-121 -62.300 45  SP16977A ZP_02063442.1 408380 Purified-2010-09-29
22-342 -33.500 12  MA16083B NP_033049.1 400502 Cloned-2009-03-24
60-565 -29.600 TM1332 TM1332 283195 Selected-2001-10-12
NEW_HUMAN_DOMAINS 72-198 -30.300 10  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB1214 4-327 -37.700 11  4i1a_A mol:protein length:391 Response regulator aspartate phosphatase I
6-565 -20.500 10  4hnw_A mol:protein length:863 N-terminal acetyltransferase A complex subuni
19-508 -22.700 3zgq_A mol:protein length:482 INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEP
74-434 -24.200 1hz4_A mol:protein length:373 MALT REGULATORY PROTEIN
PfamA27U 4-440 -22.100 10  PF12569.3; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
7-310 -23.600 11  PF13429.1; Q39U81_GEOMG/198-480; Tetratricopeptide repeat
7-562 -12.300 10  PF10345.4; A5DUM3_LODEL/358-1067; Cohesin loading factor
63-328 -34.300 13  PF14938.1; C5YKG9_SORBI/6-279; Soluble NSF attachment protein, SNAP
SCOP175 16-324 -22.300 d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
68-330 -33.800 11  d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
76-432 -24.400 d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
506-564 -15.300 13  d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
VFDB 4-429 -22.500 11  VFG1928 (gi:15792870) pflA - paralysed flagellum protein [Campylobacter jejuni NCTC 11168] (VF0114)
50-307 -27.800 13  VFG1217 (gi:15599000) pilF - type 4 fimbrial biogenesis protein PilF [Pseudomonas aeruginosa PAO1] (VF0082)
479-564 -16.900 VFG0451 (gi:16763932) fimW - putative fimbrial protein [Salmonella enterica (serovar typhimurium) LT2] (VF0102)
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 COG1214 3-133 -7.130 [M] COG3056 Uncharacterized lipoprotein
H.sapiens 5-145 -7.450 12  sp|Q5T011|SZT2_HUMAN Protein SZT2 OS=Homo sapiens GN=SZT2 PE=2 SV=3 (Range: 301-600)
HGM_OVER 1-51 -3.840 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG1214 1-140 -10.800 SP18611A ZP_03310651.1 410649 Purified-2010-09-29
NEW_HUMAN_DOMAINS 1-82 -7.050 sp|Q9UL41|PNMA3_HUMAN Paraneoplastic antigen Ma3 OS=Homo sapiens GN=PNMA3 PE=2 SV=2 (Range: 1-112)
PDB1214 1-31 -8.200 2xtc_A mol:protein length:90 F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
PfamA27U 10-152 -47.900 11  PF14137.1; A6LYB2_CLOB8/32-182; Domain of unknown function (DUF4304 topsan)
SCOP175 4-133 -6.360 10  d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
VFDB 2-48 -6.520 12  VFG1721 (gi:26249435) c3600 - Hypothetical protein [Escherichia coli CFT073]
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 COG1214 68-165 -6.540 20  [R] COG2969 Stringent starvation protein B
H.sapiens 33-134 -7.650 19  sp|Q30KQ8|DB112_HUMAN Beta-defensin 112 OS=Homo sapiens GN=DEFB112 PE=2 SV=1
HGM_OVER 127-178 -4.640 19  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
JCSG1214 11-130 -7.800 24  SP17336A YP_001713174.1 406473 Purified-2010-09-29
NEW_HUMAN_DOMAINS 1-181 -7.060 13  sp|A6NCJ1|CS071_HUMAN Uncharacterized protein C19orf71 OS=Homo sapiens GN=C19orf71 PE=4 SV=2 (Range: 1-209)
PDB1214 23-204 -7.510 13  3u9l_A mol:protein length:324 3-oxoacyl-[acyl-carrier-protein] reductase
PfamA27U 15-139 -7.120 15  PF06232.6; Q2HVW6_MEDTR/41-164; Embryo-specific protein 3, (ATS3)
SCOP175 2-141 -6.810 15  d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus thermophilus [TaxId: 274]}
VFDB 13-140 -4.570 15  VFG0820 (gi:15804237) cesD - cesD [Escherichia coli O157:H7 EDL933] (VF0191)
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 COG1214 6-309 -50.400 18  [PT] COG3712 Fe2+-dicitrate sensor, membrane component
H.sapiens 116-292 -8.170 11  sp|Q9UHN6|TMEM2_HUMAN Transmembrane protein 2 OS=Homo sapiens GN=TMEM2 PE=1 SV=1 (Range: 1-300)
HGM_OVER 109-205 -5.300 10  PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)
JCSG1214 1-311 -105.000 53  RH6518A ZP_02031563.1 415592 Selected-2009-12-04
NEW_HUMAN_DOMAINS 87-277 -6.440 13  sp|Q5W0A0|F194B_HUMAN Protein FAM194B OS=Homo sapiens GN=FAM194B PE=2 SV=1 (Range: 457-696)
PDB1214 91-311 -78.000 28  4m0h_A mol:protein length:232 Conserved hypothetical protein, putative anti
PfamA27U 100-196 -29.800 21  PF04773.8; Q2YA72_NITMU/40-132; FecR protein
209-308 -28.400 31  PF16344; Q8A6K5.1/234-336; Domain of unknown function (DUF4974 topsan)
SCOP175 105-261 -7.380 13  d1f0la1 b.2.1.1 (A:381-535) Diphtheria toxin, C-terminal domain {Corynebacterium diphtheriae [TaxId: 1717]}
VFDB 6-301 -45.200 18  VFG1048 (gi:15808728) fecR - FecR [Shigella flexneri (serotype 2a) YSH6000]
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 COG1214 1-138 -83.000 34  [R] COG2166 SufE protein probably involved in Fe-S center assembly
H.sapiens 2-88 -8.070 24  sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3 (Range: 1201-1500)
HGM_OVER 38-90 -3.240 PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;
JCSG1214 47-125 -6.480 10  SP18446A NP_439121.1 411606 Purified-2010-09-29
NEW_HUMAN_DOMAINS 19-83 -5.190 12  sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens GN=RFTN1 PE=1 SV=4 (Range: 279-388)
PDB1214 1-138 -82.900 32  1mzg_A mol:protein length:146 SufE Protein
PfamA27U 10-133 -74.400 31  PF02657.10; YGDK_ECOLI/20-145; Fe-S metabolism associated domain
SCOP175 3-142 -81.800 31  d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
VFDB 2-130 -5.000 11  VFG0734 (gi:2865294) espH - Orf18 [Escherichia coli E2348/69] (VF0183)
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 COG1214 2-225 -82.300 25  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
H.sapiens 3-156 -42.200 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
3-208 -19.700 11  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
HGM_OVER 7-207 -4.590 PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
JCSG1214 1-225 -93.600 31  CC20735A NP_421829.1 423150 Purified-2011-07-25
NEW_HUMAN_DOMAINS 1-159 -47.000 10  sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB1214 1-225 -95.900 34  1kgs_A mol:protein length:225 DNA BINDING RESPONSE REGULATOR D
PfamA27U 1-223 -14.100 12  PF07688.7; KAIA_SYNY3/5-288; KaiA domain
3-113 -28.600 29  PF00072.19; AGMR_PSEAE/4-117; Response regulator receiver domain
145-222 -33.000 23  PF00486.23; O85058_PROST/114-189; Transcriptional regulatory protein, C terminal
SCOP175 1-121 -63.100 38  d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
121-225 -42.800 23  d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
VFDB 2-225 -96.700 36  VFG1563 (gi:23954247) orf29 - hypothetical protein [Escherichia coli 536]
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 COG1214 4-384 -49.800 19  [H] COG1488 Nicotinic acid phosphoribosyltransferase
H.sapiens 7-384 -47.800 16  sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2
HGM_OVER 1-163 -2.640 10  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
JCSG1214 2-388 -111.000 32  YOR209C YOR209C 354135 PDB-2004-08-06
NEW_HUMAN_DOMAINS 3-151 -5.050 10  sp|Q6P047|CH074_HUMAN Uncharacterized protein C8orf74 OS=Homo sapiens GN=C8orf74 PE=2 SV=3 (Range: 27-182)
PDB1214 2-388 -131.000 48  2im5_A mol:protein length:394 Nicotinate phosphoribosyltransferase
PfamA27U 160-383 -43.800 18  PF04095.11; O23191_ARATH/174-402; Nicotinate phosphoribosyltransferase (NAPRTase) family
SCOP175 2-135 -62.400 29  d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
124-385 -93.500 40  d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
VFDB 165-219 -7.170 18  VFG1738 (gi:26249452) c3617 - Unknown in putative ISEc8 [Escherichia coli CFT073]
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 COG1214 4-244 -39.000 16  [M] COG3209 Rhs family protein
H.sapiens 4-244 -45.200 sp|Q6N022|TEN4_HUMAN Teneurin-4 OS=Homo sapiens GN=ODZ4 PE=2 SV=2 (Range: 1801-2100)
HGM_OVER 1-113 -8.680 PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;
JCSG1214 1-244 -42.700 11  SP16560A YP_210936.1 407952 Purified-2010-09-29
NEW_HUMAN_DOMAINS 4-193 -5.870 sp|Q8TDX9|PK1L1_HUMAN Polycystic kidney disease protein 1-like 1 OS=Homo sapiens GN=PKD1L1 PE=2 SV=1 (Range: 281-511)
PDB1214 8-244 -43.200 3ec5_A mol:protein length:320 Outer Surface Protein A
PfamA27U 8-245 -38.400 10  PF06788.8; Q57PD7_SALCH/4-239; Uncharacterised protein family (UPF0257 topsan)
SCOP175 6-235 -9.130 11  d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
VFDB 6-245 -10.100 13  VFG1354 (gi:15900810) cbpE - choline binding protein E [Streptococcus pneumoniae TIGR4] (VF0145)
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 COG1214 1-346 -62.800 26  [H] COG2073 Cobalamin biosynthesis protein CbiG
357-599 -64.900 45  [H] COG2875 Precorrin-4 methylase
H.sapiens 353-580 -29.200 14  sp|Q9H2P9|DPH5_HUMAN Diphthine synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2
HGM_OVER 57-188 -2.210 11  PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
JCSG1214 1-580 -95.600 19  XB5563A 10639946 358701 Purified-2005-05-18
NEW_HUMAN_DOMAINS 360-514 -5.120 sp|Q8TCI5|CA088_HUMAN Uncharacterized protein C1orf88 OS=Homo sapiens GN=C1orf88 PE=2 SV=2 (Range: 1-191)
PDB1214 1-346 -56.600 21  3eeq_A mol:protein length:336 putative Cobalamin biosynthesis protein G hom
348-598 -65.200 44  4e16_A mol:protein length:253 precorrin-4 C(11)-methyltransferase
PfamA27U 43-126 -50.200 45  PF11760.3; Q6ARS3_DESPS/35-118; Cobalamin synthesis G N-terminal
130-228 -33.900 13  PF11761.3; A8FV20_SHESH/134-234; Cobalamin biosynthesis central region
226-344 -43.500 30  PF01890.11; A1AU03_PELPD/230-350; Cobalamin synthesis G C-terminus
353-559 -24.600 16  PF00590.15; A1AUS5_PELPD/5-191; Tetrapyrrole (Corrin/Porphyrin) Methylases
SCOP175 1-224 -50.100 21  d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}
220-346 -42.100 26  d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE {Pseudomonas aeruginosa [TaxId: 287]}
350-580 -60.800 44  d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]}
VFDB 58-560 -5.170 11  VFG1409 (gi:15610078) fadD28 - fadD28 [Mycobacterium tuberculosis H37Rv] (VF0309)
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 COG1214 1-299 -23.600 12  [MOT] KOG1550 Extracellular protein SEL-1 and related proteins
75-299 -28.500 11  [R] COG0790 FOG: TPR repeat, SEL1 subfamily
H.sapiens 1-297 -28.600 10  sp|Q68CR1|SE1L3_HUMAN Protein sel-1 homolog 3 OS=Homo sapiens GN=SEL1L3 PE=1 SV=2 (Range: 751-1050)
81-299 -32.400 sp|Q5TEA6|SE1L2_HUMAN(removed signalp:1-23) Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 (Range: 1-300)
122-299 -36.000 11  sp|Q5TEA6|SE1L2_HUMAN(removed signalp:1-23) Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 (Range: 451-665)
200-299 -38.100 14  sp|Q9UBV2|SE1L1_HUMAN(removed signalp:1-21) Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 (Range: 601-773)
HGM_OVER 235-292 -3.410 12  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
JCSG1214 3-299 -10.300 SP13787E ZP_02067070.1 408267 Purified-2013-05-30
93-299 -36.500 SP2245G ZP_03310339.1 410522 Purified-2010-09-29
140-299 -37.700 11  SP2245E NP_439767.1 411577 Selected-2009-11-12
219-299 -41.600 17  SP2245M YP_094930.1 412074 Purified-2010-09-29
NEW_HUMAN_DOMAINS 223-290 -9.630 11  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB1214 75-299 -34.000 1ouv_A mol:protein length:273 conserved hypothetical secreted protein
171-299 -38.300 18  1klx_A mol:protein length:138 Cysteine Rich Protein B
PfamA27U 221-296 -9.880 14  PF11207.3; A6D938_9VIBR/15-220; Protein of unknown function (DUF2989 topsan)
242-277 -23.900 22  PF08238.7; Q5PFP4_SALPA/166-201; Sel1 repeat
SCOP175 75-299 -33.300 d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}
172-299 -39.800 18  d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
VFDB 98-299 -26.500 VFG0125 (gi:15598739) algK - alginate biosynthesis protein Alg44 [Pseudomonas aeruginosa PAO1] (VF0091)
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 COG1214 307-345 -8.570 21  [J] COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation
H.sapiens 123-360 -12.300 12  sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3 OS=Homo sapiens GN=MICAL3 PE=1 SV=2 (Range: 601-900)
HGM_OVER 60-343 -5.670 11  PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]
JCSG1214 196-346 -9.530 RH20508A NP_716800.1 416408 Selected-2009-12-04
NEW_HUMAN_DOMAINS 313-359 -8.010 19  sp|Q86VP1|TAXB1_HUMAN Tax1-binding protein 1 OS=Homo sapiens GN=TAX1BP1 PE=1 SV=2 (Range: 717-789)
PDB1214 313-357 -10.100 15  2co8_A mol:protein length:82 NEDD9 interacting protein with calponin homol
PfamA27U 196-352 -8.760 PF07295.6; Q0HLI9_SHESM/19-164; Protein of unknown function (DUF1451 topsan)
SCOP175 307-350 -7.770 20  d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
VFDB 309-345 -7.930 14  VFG1690 (gi:28316270) orf67 - truncated InsA protein [Escherichia coli 536]
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 COG1214 19-71 -5.120 17  [Z] KOG2826 Actin-related protein Arp2/3 complex, subunit ARPC2
H.sapiens 45-70 -6.030 23  sp|Q9NYF0|DACT1_HUMAN Dapper homolog 1 OS=Homo sapiens GN=DACT1 PE=2 SV=2 (Range: 451-750)
HGM_OVER 2-36 -3.590 17  HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;
JCSG1214 15-57 -5.250 20  SC.B21098B NP_687844.1 427863 Selected-2013-01-04
NEW_HUMAN_DOMAINS 15-61 -5.330 21  tr|B6ZDN3|B6ZDN3_HUMAN Uncharacterized protein OS=Homo sapiens GN=DCDC5 PE=4 SV=2 (Range: 261-314)
PDB1214 4-56 -6.850 13  2w9p_A mol:protein length:87 MULTICYSTATIN
PfamA27U 16-63 -7.270 25  PF14489.1; D1N404_9BACT/62-142; QueF-like protein
SCOP175 4-48 -4.990 d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]}
VFDB 3-70 -4.230 20  VFG1568 (gi:23954252) orf34 - hypothetical protein [Escherichia coli 536]
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 COG1214 15-210 -46.100 16  [R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats
H.sapiens 19-214 -45.000 13  sp|Q7L273|KCTD9_HUMAN BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9 PE=2 SV=1
HGM_OVER 133-221 -4.830 15  PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;
JCSG1214 22-220 -46.500 15  C.LS4548A NP_420698.1 423807 Selected-2011-09-02
NEW_HUMAN_DOMAINS 105-221 -7.160 12  sp|Q8N7R0|NANG2_HUMAN Putative homeobox protein NANOG2 OS=Homo sapiens GN=NANOGP1 PE=5 SV=1 (Range: 112-232)
PDB1214 9-218 -81.800 25  2w7z_A mol:protein length:214 PENTAPEPTIDE REPEAT FAMILY PROTEIN
PfamA27U 5-221 -12.800 11  PF12541.3; C4ZDA1_EUBR3/4-281; Protein of unknown function (DUF3737 topsan)
75-152 -28.400 33  PF13599.1; A5FH08_FLAJ1/44-123; Pentapeptide repeats (9 copies)
SCOP175 1-215 -10.500 12  d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
41-219 -60.400 21  d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 11-203 -41.800 15  VFG0589 (gi:16764446) pipB - Pathogenicity island encoded protein: SPI3 [Salmonella enterica (serovar typhimurium) LT2]


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.