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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 1693< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|11497071|ref|NP_051182.1| hypothetical protein (BB_P21) [Borrelia burgdorferi B31] 201 PfamA26U 2-198 -98.400 40  PF05246.6; O50904_BORBU/3-206; Protein of unknown function (DUF735 topsan)
22 gi|11497072|ref|NP_051183.1| hypothetical protein (BB_P22) [Borrelia burgdorferi B31] 271 PfamA26U 7-271 -123.000 100  PF05085.7; Q9R344_BORBU/7-271; Protein of unknown function (DUF685 topsan)
23 gi|11497073|ref|NP_051184.1| pore-forming hemolysin (BB_P23) [Borrelia burgdorferi B31] 67 PfamA26U 1-60 -11.400 31  PF05102.7; O50906_BORBU/1-59; holin, BlyA family
24 gi|11497074|ref|NP_051185.1| hemolysin accessory protein (BB_P24) [Borrelia burgdorferi B31] 115 PfamA26U 1-105 -64.300 92  PF05289.6; Q0SLC9_BORAP/1-105; Borrelia hemolysin accessory protein
25 gi|11497075|ref|NP_051186.1| hypothetical protein (BB_P25) [Borrelia burgdorferi B31] 111 PfamA26U 1-111 -78.900 100  PF06238.6; O06696_BORBU/1-111; Borrelia burgdorferi BBR25 lipoprotein
26 gi|11497076|ref|NP_051187.1|(removed signalp:1-22) hypothetical protein (BB_P26) [Borrelia burgdorferi B31] 97 PfamA26U 1-97 -81.900 70  PF02999.9; Q0SLG1_BORAP/21-117; Borrelia orf-D family
27 gi|11497077|ref|NP_051188.1|(removed signalp:1-22) rev protein (BB_P27) [Borrelia burgdorferi B31] 138 PfamA26U 1-138 -81.300 72  PF03978.8; Q93R10_BORBU/1-158; Borrelia burgdorferi REV protein
28 gi|11497078|ref|NP_051189.1|(removed signalp:1-22) lipoprotein (BB_P28) [Borrelia burgdorferi B31] 126 PfamA26U 8-122 -18.000 31  PF03304.8; O68471_BORBU/30-189; Mlp lipoprotein family
29 gi|11497079|ref|NP_051190.1| hypothetical protein (BB_P29) [Borrelia burgdorferi B31] 337 PfamA26U 21-190 -34.300 20  PF04404.7; Q4ZCX1_9CAUD/10-164; ERF superfamily
30 gi|11497080|ref|NP_051191.1| hypothetical protein (BB_P30) [Borrelia burgdorferi B31] 366 PfamA26U 16-303 -75.400 48  PF02414.10; A4ZZ29_9SPIO/10-305; Borrelia ORF-A
31 gi|11497081|ref|NP_051192.1| hypothetical protein (BB_P31) [Borrelia burgdorferi B31] 188 PfamA26U 46-187 -67.600 50  PF02890.9; O50716_BORBU/45-186; Borrelia family of unknown function DUF226 topsan
32 gi|11497082|ref|NP_051193.1| plasmid partition protein, putative (BB_P32) [Borrelia burgdorferi B31] 246 PfamA26U 9-221 -73.200 24  PF01656.18; P72976_SYNY3/5-262; CobQ/CobB/MinD/ParA nucleotide binding domain
33 gi|11497083|ref|NP_051194.1| hypothetical protein (BB_P33) [Borrelia burgdorferi B31] 202 PfamA26U 49-162 -13.500 PF11300.3; B8FXH3_DESHD/8-136; Protein of unknown function (DUF3102 topsan)
104-188 -49.900 71  PF01672.11; O68234_BORBU/82-166; Putative plasmid partition protein
34 gi|11497084|ref|NP_051195.1| BdrA (BB_P34) [Borrelia burgdorferi B31] 210 PfamA26U 5-198 -16.100 11  PF07902.6; Q1CPP5_STRPB/1-621; gp58-like protein
35 gi|11497085|ref|NP_051196.1| BppA (BB_P35) [Borrelia burgdorferi B31] 441 PfamA26U 2-441 -26.300 PF01771.12; EXON_EHV1B/73-558; Herpesvirus alkaline exonuclease
72-234 -40.900 19  PF09588.5; Q65KS1_BACLD/15-150; YqaJ-like viral recombinase domain
271-430 -52.400 60  PF03112.9; Q44708_BORBU/171-331; Uncharacterized protein family (ORF7) DUF
36 gi|11497086|ref|NP_051197.1| BppB (BB_P36) [Borrelia burgdorferi B31] 141 PfamA26U 1-141 -79.500 77  PF03196.8; Q5XYQ3_BORGA/1-142; Protein of unknown function, DUF261 topsan
37 gi|11497087|ref|NP_051198.1| BppC (BB_P37) [Borrelia burgdorferi B31] 258 PfamA26U 56-244 -49.800 16  PF00589.17; VINT_BP186/168-319; Phage integrase family
38 gi|11497061|ref|NP_051199.1| ErpA (BB_P38) [Borrelia burgdorferi B31] 173 PfamA26U 41-147 -52.200 85  PF02471.12; Q6LE23_BORBU/41-155; Borrelia outer surface protein E
39 gi|11497062|ref|NP_051200.1| ErpB (BB_P39) [Borrelia burgdorferi B31] 378 PfamA26U 1-378 -15.000 PF13779.1; A9D7X3_9RHIZ/37-855; Domain of unknown function (DUF4175 topsan)
40 gi|11497088|ref|NP_051201.1| hypothetical protein (BB_P40) [Borrelia burgdorferi B31] 193 PfamA26U 17-125 -59.400 51  PF04867.7; Q66Z53_BORBU/21-134; Protein of unknown function (DUF643 topsan)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24