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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 21 COG1214 1-15 -3.490 13  [Z] KOG1425 Microfibrillar-associated protein MFAP1
H.sapiens 2-18 -4.910 23  sp|Q9C0D2|K1731_HUMAN Leucine-rich repeat-containing protein KIAA1731 OS=Homo sapiens GN=KIAA1731 PE=2 SV=4 (Range: 1951-2250)
HGM_OVER 1-20 -1.570 15  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
JCSG1214 1-19 -5.090 15  SP18373A NP_372525.1 413697 Purified-2010-09-29
NEW_HUMAN_DOMAINS 2-18 -3.870 29  sp|Q9Y2G3|AT11B_HUMAN Probable phospholipid-transporting ATPase IF OS=Homo sapiens GN=ATP11B PE=1 SV=2 (Range: 1-65)
PDB1214 5-21 -2.150 17  2jdj_A mol:protein length:105 REDY-LIKE PROTEIN
PfamA27U 1-16 -4.280 31  PF03082.9; MS2A_DROME/1-264; Male accessory gland secretory protein
SCOP175 5-21 -2.400 47  d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}
VFDB 1-13 -3.810 30  VFG1320 (gi:21282743) isdD - conserved hypothetical protein [Staphylococcus aureus MW2] (VF0015)
2 gi|16758995|ref|NP_454612.1| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 820 COG1214 1-481 -96.200 26  [E] COG0527 Aspartokinases
456-820 -103.000 68  [E] COG0460 Homoserine dehydrogenase
H.sapiens 460-703 -8.390 16  sp|A6ND91|ASPD_HUMAN Putative L-aspartate dehydrogenase OS=Homo sapiens GN=ASPDH PE=2 SV=2
HGM_OVER 574-699 -2.640 10  HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;
JCSG1214 1-477 -80.400 20  MJ8463A YP_957443.1 403171 Crystal|NMR-2009-10-31
464-818 -41.900 21  FN0547A NP_394635.1 380082 PDB-2009-08-12
NEW_HUMAN_DOMAINS 127-800 -5.270 13  sp|Q6ZRH7|CTSRG_HUMAN Cation channel sperm-associated protein subunit gamma OS=Homo sapiens GN=CATSPERG PE=2 SV=3 (Range: 1-1072)
PDB1214 1-465 -98.700 35  3c1m_A mol:protein length:473 Probable aspartokinase
462-817 -92.300 31  1q7g_A mol:protein length:359 Homoserine dehydrogenase
PfamA27U 614-811 -30.600 28  PF00742.14; A6X079_OCHA4/139-317; Homoserine dehydrogenase
SCOP175 3-300 -75.500 34  d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
306-395 -12.300 22  d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
382-489 -33.900 23  d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
462-635 -56.400 26  d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
614-798 -76.000 34  d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 33-819 -5.890 11  VFG0930 (gi:26246565) entF - Enterobactin synthetase component F [Escherichia coli CFT073] (VF0228)
3 gi|16758996|ref|NP_454613.1| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 309 COG1214 2-309 -113.000 70  [E] COG0083 Homoserine kinase
H.sapiens 1-156 -18.900 20  sp|Q8N0W3|FUK_HUMAN L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2 (Range: 601-900)
68-309 -19.300 15  sp|Q03426|KIME_HUMAN Mevalonate kinase OS=Homo sapiens GN=MVK PE=1 SV=1
81-286 -22.600 17  sp|Q8N0W3|FUK_HUMAN L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2 (Range: 751-1050)
HGM_OVER 18-307 -2.820 12  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
JCSG1214 2-308 -95.800 26  TM0545 TM0545 282418 Purified-2001-12-06
NEW_HUMAN_DOMAINS 180-263 -5.830 16  tr|E9PFE0|E9PFE0_HUMAN Uncharacterized protein OS=Homo sapiens GN=CIITA PE=4 SV=1 (Range: 286-365)
PDB1214 1-309 -124.000 76  4rpf_A mol:protein length:310 Homoserine kinase
PfamA27U 83-150 -13.000 25  PF00288.21; ISPE_BACSU/86-144; GHMP kinases N terminal domain
232-288 -10.100 14  PF08544.8; ISPE_HAEDU/194-263; GHMP kinases C terminal
SCOP175 2-167 -69.600 31  d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
170-308 -53.800 28  d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
VFDB 1-308 -26.000 15  VFG1953 (gi:15792743) Cj1425c - putative sugar kinase [Campylobacter jejuni NCTC 11168] (VF0323)
4 gi|16758997|ref|NP_454614.1| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 428 COG1214 1-427 -110.000 29  [E] COG0498 Threonine synthase
H.sapiens 1-427 -106.000 28  sp|Q86YJ6|THNS2_HUMAN Threonine synthase-like 2 OS=Homo sapiens GN=THNSL2 PE=2 SV=3
HGM_OVER 125-329 -3.320 11  PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF
JCSG1214 84-405 -21.700 23  TM0546 TM0546 282419 Purified-2001-10-17
NEW_HUMAN_DOMAINS 220-282 -5.660 15  sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3 (Range: 2173-2248)
PDB1214 1-428 -129.000 93  1vb3_A mol:protein length:428 Threonine synthase
PfamA27U 2-80 -36.900 25  PF14821.1; A0Z7L9_9GAMM/4-82; Threonine synthase N terminus
SCOP175 1-428 -129.000 93  d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}
VFDB 33-386 -7.610 15  VFG1582 (gi:23954265) orf48 - hypothetical protein [Escherichia coli 536]
5 gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 257 COG1214 1-257 -124.000 86  [S] COG3022 Uncharacterized protein conserved in bacteria
H.sapiens 26-237 -9.570 sp|O15033|K0317_HUMAN(removed signalp:1-31) Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3 (Range: 301-600)
HGM_OVER 10-203 -4.840 14  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
JCSG1214 39-178 -6.430 12  SC.B20122S SARO_25NOV03_CONTIG16_REVISED_GENE3 428194 Selected-2013-01-04
NEW_HUMAN_DOMAINS 115-236 -6.340 21  sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2 (Range: 877-1043)
PDB1214 112-221 -8.250 18  1xi0_A mol:protein length:145 lectin
PfamA27U 1-245 -121.000 60  PF03883.9; Y1338_ALCBS/1-245; Protein of unknown function (DUF328 topsan)
SCOP175 112-221 -8.020 17  d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId: 5386]}
VFDB 110-218 -5.130 13  VFG2423 (gi:151222088) scn - complement inhibitor SCIN [Staphylococcus aureus Newman] (VF0425)
6 gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 476 COG1214 1-471 -147.000 43  [E] COG1115 Na+/alanine symporter
H.sapiens 52-437 -10.200 12  sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2
HGM_OVER 53-300 -2.940 PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
JCSG1214 12-428 -6.640 12  SP19117A NP_251051.1 413324 Selected-2009-11-12
NEW_HUMAN_DOMAINS 77-125 -6.350 16  sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5 (Range: 1-60)
PDB1214 52-432 -14.900 15  3gi8_C mol:protein length:444 Uncharacterized protein MJ0609
PfamA27U 40-458 -138.000 47  PF01235.12; Y183_HAEIN/53-467; Sodium:alanine symporter family
SCOP175 59-427 -9.750 13  d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
VFDB 49-437 -8.430 13  VFG1671 (gi:28316251) orf48 - putative lysin/cadaverin transporter [Escherichia coli 536]
7 gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 317 COG1214 1-317 -146.000 87  [G] COG0176 Transaldolase
H.sapiens 1-317 -139.000 59  sp|P37837|TALDO_HUMAN Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2
HGM_OVER 89-194 -3.070 15  PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;
JCSG1214 1-317 -139.000 59  MA0295A 13435797 399843 Cloned-2009-01-23
NEW_HUMAN_DOMAINS 6-140 -4.430 18  sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1 (Range: 1268-1423)
PDB1214 1-317 -144.000 94  3cwn_A mol:protein length:337 Transaldolase B
PfamA27U 14-313 -139.000 58  PF00923.14; Q966C7_CAEEL/13-315; Transaldolase
SCOP175 2-317 -145.000 94  d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}
VFDB 13-143 -4.930 12  VFG0407 (gi:16082745) yopR/yscH - putative type III secretion protein [Yersinia pestis CO92] (VF0140)
8 gi|16759001|ref|NP_454618.1| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 196 COG1214 2-191 -98.600 75  [H] COG0521 Molybdopterin biosynthesis enzymes
H.sapiens 2-196 -72.900 32  sp|Q9NQX3|GEPH_HUMAN Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1 (Range: 1-300)
HGM_OVER 86-151 -2.800 13  HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;
JCSG1214 1-142 -16.800 22  GE7651A YP_001088583.1 396890 Crystal|NMR-2009-07-18
NEW_HUMAN_DOMAINS 79-164 -5.070 15  sp|P86479|PR20C_HUMAN Proline-rich protein 20C OS=Homo sapiens GN=PRR20C PE=4 SV=1 (Range: 134-221)
PDB1214 1-195 -101.000 91  1di6_A mol:protein length:195 MOLYBDENUM COFACTOR BIOSYNTHETIC ENZYME
PfamA27U 8-144 -17.700 21  PF00994.19; CINAL_DESPS/4-169; Probable molybdopterin binding domain
SCOP175 2-191 -98.900 93  d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
VFDB 51-149 -5.840 17  VFG0105 (gi:15640858) acfC - accessory colonization factor AcfC [Vibrio cholerae N16961] (VF0127)
9 gi|16759002|ref|NP_454619.1| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 188 COG1214 3-184 -94.900 65  [S] COG1584 Predicted membrane protein
H.sapiens 47-183 -9.620 sp|Q3C1V0|M4A18_HUMAN Membrane-spanning 4-domains subfamily A member 18 OS=Homo sapiens GN=MS4A18 PE=2 SV=2
HGM_OVER 19-74 -6.250 16  PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
JCSG1214 1-123 -7.990 16  WS.B2594A.SFRS11 NM_004768 429859 Selected-2012-10-10
NEW_HUMAN_DOMAINS 12-63 -6.100 21  sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3 (Range: 3759-3871)
PDB1214 4-175 -7.170 11  1dg3_A mol:protein length:592 PROTEIN (INTERFERON-INDUCED GUANYLATE-BINDING
PfamA27U 3-186 -89.700 31  PF01184.14; A7TND9_VANPO/71-281; GPR1/FUN34/yaaH family
SCOP175 3-80 -7.400 12  d1g5aa1 b.71.1.1 (A:555-628) Amylosucrase {Neisseria polysaccharea [TaxId: 489]}
VFDB 12-174 -7.930 14  VFG0656 (gi:24114256) SF2992 - orf, conserved hypothetical protein [Shigella flexneri (serotype 2a) 301]
10 gi|16759003|ref|NP_454620.1| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 237 COG1214 1-237 -88.500 87  [S] COG4735 Uncharacterized protein conserved in bacteria
H.sapiens 13-129 -7.810 12  sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2 (Range: 1051-1350)
HGM_OVER 43-124 -5.000 11  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG1214 3-142 -7.950 15  MG8793B YP_413069.1 391079 Purified-2008-09-03
NEW_HUMAN_DOMAINS 6-121 -6.430 13  sp|Q9BVR0|HRC23_HUMAN Putative HERC2-like protein 3 OS=Homo sapiens GN=HERC2P3 PE=5 SV=2 (Range: 118-270)
PDB1214 8-144 -7.380 11  2clb_A mol:protein length:188 DPS-LIKE PROTEIN
PfamA27U 5-39 -10.800 40  PF13099.1; D0W7K2_NEILA/3-37; Domain of unknown function (DUF3944 topsan)
SCOP175 2-93 -6.480 14  d2mhra_ a.24.4.1 (A:) Myohemerythin {Sipunculan worm (Themiste zostericola) [TaxId: 6437]}
VFDB 5-135 -7.000 11  VFG1140 (gi:15641810) VC1808 - hypothetical protein [Vibrio cholerae N16961]
11 gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 111 COG1214 1-97 -6.120 15  [R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion
H.sapiens 15-111 -7.750 12  sp|Q8IWT3|CUL9_HUMAN Cullin-9 OS=Homo sapiens GN=CUL9 PE=1 SV=2 (Range: 1201-1500)
HGM_OVER 9-111 -4.910 HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;
JCSG1214 1-111 -50.300 79  GS13914A YP_001333704.1 384834 Purified-2010-04-01
NEW_HUMAN_DOMAINS 53-107 -6.940 18  sp|Q8WZA1|PMGT1_HUMAN Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens GN=POMGNT1 PE=1 SV=2 (Range: 233-295)
PDB1214 32-99 -6.780 13  1tvg_A mol:protein length:153 LOC51668 protein
PfamA27U 1-111 -50.300 79  PF10807.3; A6T4F3_KLEP7/1-134; Protein of unknown function (DUF2541 topsan)
SCOP175 25-105 -6.800 13  d2bvya1 b.1.18.2 (A:371-464) Beta-1,4-mannanase domain 2 (postcatalytic) {Cellulomonas fimi [TaxId: 1708]}
VFDB 31-98 -6.490 11  VFG1096 (gi:15641766) motB - chemotaxis protein MotB-related protein [Vibrio cholerae N16961]
12 gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 638 COG1214 1-638 -184.000 56  [O] COG0443 Molecular chaperone
H.sapiens 4-505 -126.000 31  sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1
255-553 -115.000 63  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 301-600)
297-586 -87.200 52  sp|P11021|GRP78_HUMAN(removed signalp:1-18) 78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2 (Range: 301-600)
405-630 -84.100 48  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 451-679)
HGM_OVER 115-495 -3.910 12  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
JCSG1214 1-614 -177.000 52  TM0373 TM0373 282248 Purified-2001-03-14
NEW_HUMAN_DOMAINS 382-502 -10.300 18  sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2 (Range: 520-675)
PDB1214 1-605 -193.000 97  2kho_A mol:protein length:605 Heat shock protein 70
1-638 -120.000 24  3d2e_A mol:protein length:675 Heat shock protein homolog SSE1
PfamA27U 4-604 -187.000 58  PF00012.15; HSP77_YEASX/32-633; Hsp70 protein
SCOP175 2-184 -72.900 53  d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
185-383 -59.200 45  d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
389-506 -75.800 96  d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
507-602 -40.400 96  d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
VFDB 2-405 -9.790 15  VFG1222 (gi:15600237) pilM - type 4 fimbrial biogenesis protein PilM [Pseudomonas aeruginosa PAO1] (VF0082)
13 gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 379 COG1214 1-375 -136.000 58  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
H.sapiens 1-376 -124.000 33  sp|Q96EY1|DNJA3_HUMAN(removed signalp:1-21) DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2
HGM_OVER 294-379 -5.630 16  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
JCSG1214 1-356 -122.000 40  TM0849 TM0849 282719 Selected-2001-10-12
NEW_HUMAN_DOMAINS 140-218 -7.000 18  sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1 PE=1 SV=4 (Range: 514-644)
PDB1214 1-363 -82.800 39  3lz8_A mol:protein length:329 Putative chaperone DnaJ
PfamA27U 5-67 -40.500 55  PF00226.26; Q22028_CAEEL/17-79; DnaJ domain
10-103 -17.800 11  PF14687.1; A7RRF5_NEMVE/89-191; Domain of unknown function (DUF4460 topsan)
147-207 -31.400 44  PF00684.14; DNAJ1_CORGL/147-211; DnaJ central domain
265-342 -19.300 23  PF01556.13; A2FIH5_TRIVA/258-337; DnaJ C terminal domain
SCOP175 1-114 -36.100 18  d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
2-76 -49.100 96  d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
118-257 -15.900 18  d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
134-212 -44.500 96  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
259-345 -26.900 26  d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 4-339 -5.090 15  VFG1218 (gi:15600233) pilQ - type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa PAO1] (VF0082)
14 gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 315 COG1214 7-313 -29.800 14  [K] COG0583 Transcriptional regulator
H.sapiens 19-92 -7.380 20  sp|Q53TQ3|IN80D_HUMAN INO80 complex subunit D OS=Homo sapiens GN=INO80D PE=1 SV=2 (Range: 601-878)
HGM_OVER 16-109 -5.140 16  PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;
JCSG1214 4-315 -91.800 19  MJ15872A YP_269805.1 402763 Purified-2009-10-17
NEW_HUMAN_DOMAINS 7-85 -5.250 14  sp|Q8TC57|CB065_HUMAN Uncharacterized protein C2orf65 OS=Homo sapiens GN=C2orf65 PE=2 SV=1 (Range: 305-454)
PDB1214 2-313 -92.600 19  1utb_A mol:protein length:315 LYSR-TYPE REGULATORY PROTEIN
PfamA27U 16-70 -11.800 20  PF00126.22; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
SCOP175 6-96 -44.200 26  d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
90-315 -56.600 16  d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}
VFDB 7-315 -41.900 11  VFG0441 (gi:17233493) spvR - Salmonella plasmid virulence: regulation of spv operon, lysR family [Salmonella enterica (serovar typhimurium) LT2] (VF0107)
15 gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 114 COG1214 1-114 -9.800 [S] COG5346 Predicted membrane protein
H.sapiens 17-114 -8.420 sp|Q6PRD1|GP179_HUMAN(removed signalp:1-25) Probable G-protein coupled receptor 179 OS=Homo sapiens GN=GPR179 PE=2 SV=2 (Range: 451-750)
HGM_OVER 1-108 -4.950 12  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
JCSG1214 15-94 -8.920 24  TM0020 TM0020 281901 Purified-2001-08-24
NEW_HUMAN_DOMAINS 25-112 -5.250 19  sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2 (Range: 2319-2428)
PDB1214 21-98 -6.660 10  2los_A mol:protein length:121 Transmembrane protein 14C
PfamA27U 19-101 -44.300 18  PF16083; C3X194.1/17-97; LydA holin phage, holin superfamily III
SCOP175 1-69 -5.310 17  d1ux5a_ a.207.1.1 (A:) Bni1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 1-114 -6.080 VFG2036 (gi:13508192) P30 - 30K adhesin-related protein [Mycoplasma pneumoniae M129] (VF0330)
16 gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 177 COG1214 1-174 -76.100 25  [R] COG3926 Putative secretion activating protein
H.sapiens 6-160 -6.820 11  sp|O15457|MSH4_HUMAN MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=2 SV=2 (Range: 751-936)
HGM_OVER 77-173 -5.600 18  HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;
JCSG1214 4-112 -7.950 18  TM0921 TM0921 282790 Purified-2001-10-25
NEW_HUMAN_DOMAINS 44-177 -5.460 10  sp|P42695|CNDD3_HUMAN Condensin-2 complex subunit D3 OS=Homo sapiens GN=NCAPD3 PE=1 SV=2 (Range: 1-147)
PDB1214 1-174 -84.300 35  2ikb_A mol:protein length:167 Hypothetical protein NMB1012
PfamA27U 3-88 -52.700 30  PF05838.7; Q7ME33_VIBVY/17-107; Glycosyl hydrolase 108
91-176 -34.900 23  PF09374.5; Q8EDS2_SHEON/119-186; Predicted Peptidoglycan domain
SCOP175 1-174 -83.700 35  d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria meningitidis [TaxId: 487]}
VFDB 3-114 -7.130 15  VFG0823 (gi:15804240) Z5131 - - [Escherichia coli O157:H7 EDL933]
17 gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 147 COG1214 2-129 -41.800 15  [K] COG3710 DNA-binding winged-HTH domains
H.sapiens 5-90 -7.590 16  sp|Q9NVM4|ANM7_HUMAN Protein arginine N-methyltransferase 7 OS=Homo sapiens GN=PRMT7 PE=1 SV=1 (Range: 301-600)
HGM_OVER 19-88 -4.730 19  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
JCSG1214 1-129 -29.900 14  TT0126A NP_418557.1 403990 Purified-2009-11-06
NEW_HUMAN_DOMAINS 1-98 -7.070 11  sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2 (Range: 151-468)
PDB1214 2-106 -26.400 15  1gxp_A mol:protein length:106 PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY
PfamA27U 25-102 -26.200 14  PF00486.23; O85058_PROST/114-189; Transcriptional regulatory protein, C terminal
SCOP175 2-106 -26.300 15  d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
VFDB 3-129 -47.700 20  VFG1600 (gi:23954283) orf66 - hypothetical protein [Escherichia coli 536]
18 gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 699 COG1214 1-512 -131.000 97  [G] COG3325 Chitinase
59-555 -23.700 10  [R] COG3858 Predicted glycosyl hydrolase
188-696 -16.400 11  [R] COG3979 Uncharacterized protein contain chitin-binding domain type 3
H.sapiens 1-473 -29.600 15  sp|Q9BWS9|CHID1_HUMAN(removed signalp:1-19) Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1
53-518 -73.200 20  sp|Q9BZP6|CHIA_HUMAN(removed signalp:1-21) Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1
429-648 -16.900 10  sp|Q12889|OVGP1_HUMAN(removed signalp:1-21) Oviduct-specific glycoprotein OS=Homo sapiens GN=OVGP1 PE=2 SV=1 (Range: 301-600)
HGM_OVER 187-304 -3.290 13  PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;
JCSG1214 2-484 -54.000 15  GS13820A NP_810545.1 384117 Crystal|NMR-2009-01-09
NEW_HUMAN_DOMAINS 192-273 -6.190 11  sp|Q6UXT9|ABH15_HUMAN Abhydrolase domain-containing protein 15 OS=Homo sapiens GN=ABHD15 PE=2 SV=2 (Range: 96-180)
PDB1214 2-509 -111.000 42  4dws_A mol:protein length:546 Chi2
25-612 -97.700 15  4TXG Entity 1(prereleased)
47-694 -34.800 12  4hmc_A mol:protein length:528 Chitinase 60
PfamA27U 53-465 -90.100 27  PF00704.23; Q9WFU7_9ABAC/159-544; Glycosyl hydrolases family 18
630-698 -14.700 18  PF14600.1; D2BWX3_DICD5/365-426; Cellulose-binding domain
SCOP175 42-410 -79.200 24  d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]}
49-483 -76.000 23  d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]}
640-696 -15.300 17  d1goia1 b.72.2.1 (A:447-498) Chitinase B, C-terminal domain {Serratia marcescens [TaxId: 615]}
VFDB 78-477 -6.890 14  VFG1568 (gi:23954252) orf34 - hypothetical protein [Escherichia coli 536]
19 gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 383 COG1214 1-382 -7.460 10  [M] COG1361 S-layer domain
H.sapiens 132-191 -11.200 20  sp|P84157|MXRA7_HUMAN(removed signalp:1-33) Matrix-remodeling-associated protein 7 OS=Homo sapiens GN=MXRA7 PE=1 SV=1
HGM_OVER 1-106 -4.690 16  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
JCSG1214 136-191 -11.200 SP17784A ZP_02421200.1 411248 Crystal|NMR-2013-05-16
NEW_HUMAN_DOMAINS 136-189 -10.400 sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4 (Range: 606-751)
PDB1214 2-78 -7.790 26  4har_A mol:protein length:151 Capsid protein
PfamA27U 136-188 -9.820 PF02948.10; Q2HYD7_CHAVD/8-189; Amelogenin
SCOP175 5-52 -6.360 16  d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]}
VFDB 132-191 -6.750 13  VFG1795 (gi:37572662) cba - c protein beta antigen [Streptococcus agalactiae FM027022] (VF0277)
20 gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 620 COG1214 256-607 -8.720 13  [G] COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A)
H.sapiens 5-180 -8.130 sp|Q5JPE7|NOMO2_HUMAN(removed signalp:1-31) Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1 (Range: 901-1200)
HGM_OVER 268-514 -3.930 PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
JCSG1214 368-495 -6.840 11  MG14647A YP_166335.1 391417 PDB-2008-12-16
NEW_HUMAN_DOMAINS 397-499 -6.380 11  sp|Q9BU19|ZN692_HUMAN Zinc finger protein 692 OS=Homo sapiens GN=ZNF692 PE=1 SV=1 (Range: 29-120)
PDB1214 194-520 -8.790 13  3vog_A mol:protein length:373 Cellobiohydrolase
PfamA27U 254-517 -8.300 16  PF01341.12; Q0TVM0_PHANO/58-351; Glycosyl hydrolases family 6
SCOP175 196-527 -8.090 14  d1uoza_ c.6.1.1 (A:) Putative cellulase Rv0062 (Cel6, CelA1) {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 318-467 -5.780 10  VFG1621 (gi:23954303) orf87 - hypothetical protein [Escherichia coli 536]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Doukhanina EV, Chen S, van der Zalm E, Godzik A, Reed J, Dickman MB. Identification and functional characterization of the BAG protein family inArabidopsis thaliana. Biol Chem. 2006 Jul 7;281(27):18793-801. Epub 2006 Apr 24.