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Results: 1-20 of 13463next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF00001.16; HRH2_CANFA/35-288; 7 transmembrane receptor (rhodopsin family) 254 COG0113 1-254 -101.000 35  [R] KOG3656 FOG: 7 transmembrane receptor
PDB0113 1-254 -110.000 36  3kj6_A mol:protein length:366 Beta-2 adrenergic receptor
PfamA26U 1-254 -57.500 12  PF10323.4; Q86DM2_CAEEL/15-294; Serpentine type 7TM GPCR chemoreceptor Srv
SCOP175 1-254 -77.700 17  d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
2 PF00002.19; GLP1R_RAT/141-398; 7 transmembrane receptor (Secretin family) 258 COG0113 3-258 -76.000 50  [T] KOG4564 Adenylate cyclase-coupled calcitonin receptor
PDB0113 2-257 -15.700 13  2z73_A mol:protein length:448 Rhodopsin
PfamA26U 1-258 -71.600 12  PF05462.6; CAR4_DICDI/1-309; Slime mold cyclic AMP receptor
SCOP175 3-225 -15.400 12  d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
3 PF00003.17; Q80Z09_MOUSE/601-839; 7 transmembrane sweet-taste receptor of 3 GCPR 239 COG0113 3-239 -38.600 [S] KOG4418 Predicted membrane protein
PDB0113 6-239 -10.600 12  2z73_A mol:protein length:448 Rhodopsin
PfamA26U 49-237 -8.880 11  PF05297.6; Q89558_EBVG/1-381; Herpesvirus latent membrane protein 1 (LMP1)
SCOP175 6-239 -9.160 13  d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
4 PF00004.24; LON_BRECH/351-493; ATPase family associated with various cellular activities (AAA) 143 COG0113 1-143 -87.600 76  [O] COG0466 ATP-dependent Lon protease, bacterial type
PDB0113 1-143 -89.800 79  3m6a_A mol:protein length:543 ATP-dependent protease La 1
PfamA26U 1-122 -15.900 12  PF00910.17; A7M6L1_9SECO/473-576; RNA helicase
SCOP175 1-132 -16.400 21  d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
5 PF00005.22; YTFR_ECOLI/49-174; ABC transporter 126 COG0113 1-126 -47.600 35  [R] COG3845 ABC-type uncharacterized transport systems, ATPase components
PDB0113 1-126 -39.300 30  1g6h_A mol:protein length:257 HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANS
PfamA26U 1-126 -15.300 21  PF09818.4; Q2C6W1_9GAMM/1-438; Predicted ATPase of the ABC class
SCOP175 1-126 -39.400 30  d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
6 PF00006.20; A0YD60_9GAMM/56-264; ATP synthase alpha/beta family, nucleotide-binding domain 209 COG0113 1-209 -97.200 53  [K] COG1158 Transcription termination factor
PDB0113 1-209 -98.500 53  2ht1_A mol:protein length:433 Transcription termination factor rho
PfamA26U 6-197 -9.540 12  PF07088.6; GVPD1_HALSA/23-536; GvpD gas vesicle protein
12-169 -11.900 12  PF13481.1; Q7U700_SYNPX/79-275; AAA domain
SCOP175 1-209 -113.000 53  d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}
7 PF00007.17; GTHB2_FUNHE/24-128; Cystine-knot domain 105 COG0113 2-86 -9.510 16  [T] KOG3900 Transforming growth factor beta, bone morphogenetic protein and related proteins
PDB0113 2-105 -46.900 41  1fl7_B mol:protein length:111 FOLLICLE STIMULATING PROTEIN BETA CHAIN
PfamA26U 2-94 -21.600 14  PF05463.6; SOSD1_MOUSE/6-206; Sclerostin (SOST)
SCOP175 4-105 -47.600 43  d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone, follitropin, beta chain {Human (Homo sapiens) [TaxId: 9606]}
8 PF00008.22; LTBP1_RAT/1462-1496; EGF-like domain 35 COG0113 1-28 -5.450 21  [C] KOG3057 Cytochrome c oxidase, subunit VIb/COX12
PDB0113 1-34 -15.300 29  1kig_L mol:protein length:51 FACTOR XA
PfamA26U 8-27 -11.300 45  PF07645.10; Q8WPL1_OIKDI/1687-1732; Calcium-binding EGF domain
SCOP175 1-35 -17.100 45  d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
9 PF00009.22; EFG_CHLPN/9-286; Elongation factor Tu GTP binding domain 278 COG0113 1-278 -108.000 58  [J] COG0480 Translation elongation factors (GTPases)
PDB0113 1-278 -108.000 57  4fn5_A mol:protein length:709 Elongation factor G 1
PfamA26U 3-174 -13.900 17  PF10662.4; A5ZM04_9FIRM/1-141; Ethanolamine utilisation - propanediol utilisation
SCOP175 1-278 -129.000 59  d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}
10 PF00010.21; BHA15_RAT/73-125; Helix-loop-helix DNA-binding domain 53 COG0113 1-53 -26.400 47  [K] KOG4029 Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1
PDB0113 1-53 -39.800 58  2ql2_B mol:protein length:60 Neurogenic differentiation factor 1
PfamA26U 1-53 -5.340 13  PF08589.5; Q0CA90_ASPTN/9-99; Fungal protein of unknown function (DUF1770 topsan)
SCOP175 1-53 -33.200 36  d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}
11 PF00011.16; HSP23_DROME/63-161; Hsp20/alpha crystallin family 99 COG0113 2-99 -45.800 67  [O] KOG3591 Alpha crystallins
PDB0113 2-99 -52.900 41  3n3e_A mol:protein length:106 Alpha A crystallin
PfamA26U 1-93 -19.100 14  PF05455.6; O33403_NATVU/1-181; GvpH
SCOP175 2-99 -33.500 11  d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
12 PF00012.15; HSP77_YEAST/32-633; Hsp70 protein 602 COG0113 1-602 -176.000 55  [O] COG0443 Molecular chaperone
PDB0113 1-602 -186.000 59  2kho_A mol:protein length:605 Heat shock protein 70
PfamA26U 2-368 -22.400 23  PF06723.8; Q92GC5_RICCN/10-340; MreB/Mbl protein
SCOP175 1-181 -84.700 59  d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
181-375 -76.600 47  d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
381-498 -75.800 66  d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
499-600 -35.400 27  d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
13 PF00013.24; Q9LQ22_ARATH/211-276; KH domain 66 COG0113 1-66 -26.400 33  [AR] KOG2193 IGF-II mRNA-binding protein IMP, contains RRM and KH domains
PDB0113 1-66 -37.200 34  1dtj_A mol:protein length:76 RNA-BINDING NEUROONCOLOGICAL VENTRAL ANTIGEN
PfamA26U 10-54 -21.900 31  PF13014.1; B9HEA8_POPTR/415-462; KH domain
SCOP175 1-66 -37.300 33  d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
14 PF00014.18; O17644_CAEEL/982-1034; Kunitz/Bovine pancreatic trypsin inhibitor domain 53 COG0113 1-52 -28.800 36  [R] KOG3540 Beta amyloid precursor protein
PDB0113 1-52 -32.800 38  1irh_A mol:protein length:61 tissue factor pathway inhibitor
PfamA26U 30-48 -6.050 26  PF06358.6; Q6B4J7_9VIRU/1-111; Protein of unknown function (DUF1065 topsan)
SCOP175 1-52 -32.300 36  d1shpa_ g.8.1.1 (A:) Trypsin inhibitor {Sea anemone (Stichodactyla helianthus) [TaxId: 6123]}
15 PF00015.16; MCPC_SALTY/323-517; Methyl-accepting chemotaxis protein (MCP) signalling domain 195 COG0113 1-194 -34.000 35  [NT] COG0840 Methyl-accepting chemotaxis protein
PDB0113 1-195 -83.700 79  3zx6_A mol:protein length:341 HAMP, METHYL-ACCEPTING CHEMOTAXIS PROTEIN I
PfamA26U 1-175 -63.800 18  PF03532.8; O50963_BORBU/3-255; OMS28 porin
SCOP175 16-156 -5.900 19  d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
16 PF00016.15; RBL1A_CHRVI/146-454; Ribulose bisphosphate carboxylase large chain, catalytic domain 309 COG0113 1-309 -92.900 40  [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit
PDB0113 1-309 -109.000 78  1rsc_A mol:protein length:472 RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENA
PfamA26U 20-303 -8.770 17  PF01207.12; DUSB_ECOLI/13-321; Dihydrouridine synthase (Dus)
SCOP175 1-309 -119.000 73  d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
17 PF00017.19; P85B_BOVIN/326-401; SH2 domain 76 COG0113 1-76 -39.800 39  [T] KOG4566 Cytokine-inducible SH2 protein
PDB0113 1-76 -49.600 84  1fu5_A mol:protein length:111 PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPH
PfamA26U 1-74 -7.520 11  PF07528.9; ILF2_DROME/105-345; DZF domain
SCOP175 1-76 -49.600 84  d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
18 PF00018.23; YKA7_CAEEL/197-244; SH3 domain 48 COG0113 1-48 -27.900 22  [S] KOG2995 FOG: SH3 domain
PDB0113 2-48 -37.100 29  1ark_A mol:protein length:60 NEBULIN
PfamA26U 2-48 -24.900 17  PF07653.12; Q91VM1_MOUSE/239-294; Variant SH3 domain
SCOP175 2-48 -37.100 29  d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}
19 PF00019.15; DVR1_DANRE/251-355; Transforming growth factor beta like domain 105 COG0113 1-105 -56.800 63  [T] KOG3900 Transforming growth factor beta, bone morphogenetic protein and related proteins
PDB0113 1-105 -78.200 46  2qcq_A mol:protein length:110 Bone morphogenetic protein 3
PfamA26U 1-105 -14.600 15  PF03045.10; GREM1_MOUSE/67-184; DAN domain
SCOP175 2-105 -77.100 64  d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2) {Human (Homo sapiens) [TaxId: 9606]}
20 PF00020.13; TNR4_RAT/62-102; TNFR/NGFR cysteine-rich region 41 COG0113 1-28 -5.380 28  [C] KOG2415 Electron transfer flavoprotein ubiquinone oxidoreductase
PDB0113 1-41 -9.060 39  2aw2_B mol:protein length:108 Tumor necrosis factor receptor superfamily me
PfamA26U 3-41 -6.160 12  PF04186.8; Q4JVQ6_CORJK/2-119; FxsA cytoplasmic membrane protein
SCOP175 17-41 -13.800 72  d2heyr1 g.24.1.1 (R:83-142) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.