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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 COG0516 3-451 -125.000 33  [L] COG0593 ATPase involved in DNA replication initiation
H.sapiens 123-445 -11.100 13  sp|O43929|ORC4_HUMAN Origin recognition complex subunit 4 OS=Homo sapiens GN=ORC4L PE=1 SV=2
124-374 -12.100 14  sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 301-600)
149-290 -12.200 20  sp|O43933|PEX1_HUMAN Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1 (Range: 451-750)
HGM_OVER 149-400 -3.750 11  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
JCSG0516 1-451 -120.000 27  C.LS21333A NP_418828.1 430427 Purified-2014-07-08
NEW_HUMAN_DOMAINS 148-257 -5.910 18  sp|Q7Z401|MYCPP_HUMAN C-myc promoter-binding protein OS=Homo sapiens GN=DENND4A PE=1 SV=2 (Range: 1715-1863)
PDB0516 7-453 -128.000 34  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
PfamA30U 5-71 -9.870 20  PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain
113-334 -107.000 60  PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein
361-429 -34.600 42  PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
SCOP206 111-329 -98.400 38  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
346-453 -43.400 24  d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
VFDB 149-317 -7.230 11  VFG006582(gi:15645649) (flhF) flagellar biosynthesis protein [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 COG0516 1-368 -91.600 22  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
H.sapiens 136-370 -10.800 11  sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1
HGM_OVER 67-345 -2.780 PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
JCSG0516 1-370 -114.000 100  MH15438A YP_002935947.1 394339 PDB-2011-07-20
NEW_HUMAN_DOMAINS 120-245 -4.970 16  sp|Q96NH3|BROMI_HUMAN Protein broad-minded OS=Homo sapiens GN=BROMI PE=2 SV=4 (Range: 941-1070)
PDB0516 1-370 -114.000 100  3t0p_A mol:protein length:371 DNA polymerase III, beta subunit
PfamA30U 1-118 -39.800 33  PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
128-243 -43.600 28  PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
245-364 -48.100 30  PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
SCOP206 1-119 -47.400 22  d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
122-244 -53.300 17  d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
245-366 -45.600 26  d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
VFDB 14-178 -3.710 12  VFG002484(gi:53722528) (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 COG0516 3-70 -44.400 39  [S] COG2501 Uncharacterized conserved protein
H.sapiens 2-62 -11.200 13  sp|Q9P0P8|CF203_HUMAN Uncharacterized protein C6orf203 OS=Homo sapiens GN=C6orf203 PE=1 SV=1
HGM_OVER 24-57 -3.900 20  PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]
JCSG0516 13-63 -13.800 20  SP0223F ZP_04009405.1 413831 Purified-2010-09-29
NEW_HUMAN_DOMAINS 7-70 -6.240 18  sp|Q02241|KIF23_HUMAN Kinesin-like protein KIF23 OS=Homo sapiens GN=KIF23 PE=1 SV=3 (Range: 820-895)
PDB0516 9-70 -41.600 35  1p9k_A mol:protein length:79 orf, hypothetical protein
PfamA30U 6-70 -46.300 56  PF13275.4; D4IXS8_BUTFI/4-68; S4 domain
SCOP206 9-70 -41.700 35  d1o09a1 d.66.1.6 (A:3-79) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
VFDB 1-66 -5.170 18  VFG001211(gi:15599751) (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 COG0516 1-359 -104.000 23  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
H.sapiens 1-291 -11.900 14  sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2 (Range: 1-300)
3-260 -16.500 12  sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens GN=SMC5 PE=1 SV=2 (Range: 1-300)
HGM_OVER 38-225 -2.790 11  PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;
JCSG0516 1-349 -21.400 15  NT12358C DHAF_12NOV03_CONTIG1086_REVISED_GENE3509 378730 Purified-2008-01-24
NEW_HUMAN_DOMAINS 173-312 -6.200 10  sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1 (Range: 899-1057)
PDB0516 1-362 -118.000 28  2o5v_A mol:protein length:359 DNA replication and repair protein recF
PfamA30U 1-335 -19.700 15  PF13175.4; I1YS32_PREI7/1-378; AAA ATPase domain
SCOP206 1-341 -26.700 20  g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Pyrococcus furiosus [TaxId: 2261]}
VFDB 2-326 -10.400 14  VFG037118(gi:15676638) (recN) DNA repair protein RecN [RecN (VF0457)] [Neisseria meningitidis MC58]
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 COG0516 5-645 -156.000 53  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
H.sapiens 2-249 -49.700 25  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 1-300)
89-400 -64.400 19  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 151-450)
247-544 -75.700 25  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 301-600)
403-645 -52.800 30  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 451-750)
HGM_OVER 464-634 -4.440 14  HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;
JCSG0516 10-645 -193.000 53  TM0833 TM0833 282703 Purified-2005-04-05
NEW_HUMAN_DOMAINS 255-396 -6.780 sp|Q8N6G2|CM026_HUMAN Uncharacterized protein C13orf26 OS=Homo sapiens GN=C13orf26 PE=2 SV=1 (Range: 105-289)
PDB0516 3-644 -186.000 54  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
PfamA30U 230-399 -84.500 46  PF00204.23; A9KS52_CLOPH/226-396; DNA gyrase B
540-640 -23.100 19  PF16898.3; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
571-634 -43.200 59  PF00986.19; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
SCOP206 22-229 -89.400 67  d4k4oa1 d.122.1.0 (A:18-224) automated matches {Enterococcus faecalis [TaxId: 226185]}
230-401 -85.900 44  d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
422-624 -93.800 57  d3m4ia_ e.78.1.1 (A:) DNA gyrase beta-prime domain {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 3-538 -6.730 12  VFG000434(gi:17233482) (pefC) plasmid-encoded fimbriae usher protein PefC [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 COG0516 7-830 -208.000 43  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
H.sapiens 8-206 -23.100 28  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 601-900)
71-386 -55.700 23  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 751-1050)
239-491 -29.800 17  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 901-1200)
HGM_OVER 403-490 -3.230 PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
JCSG0516 7-811 -198.000 42  TM1084 TM1084 282951 Purified-2001-04-24
NEW_HUMAN_DOMAINS 38-166 -5.280 20  sp|Q9H1B7|I2BPL_HUMAN Interferon regulatory factor 2-binding protein-like OS=Homo sapiens GN=IRF2BPL PE=1 SV=1 (Range: 373-516)
PDB0516 1-505 -145.000 60  4ddq_A mol:protein length:502 DNA gyrase subunit A
31-739 -124.000 37  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
505-811 -65.200 38  1zi0_A mol:protein length:307 DNA gyrase subunit A
PfamA30U 33-476 -62.000 21  PF00521.18; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
614-659 -13.100 47  PF03989.11; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
SCOP206 31-492 -133.000 52  d3ilwa_ e.11.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}
505-811 -64.900 41  d4g3na_ b.68.10.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
VFDB 45-766 -7.640 10  VFG001960(gi:15792750) (Cj1432c) sugar transferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 COG0516 7-281 -92.300 29  [C] COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
H.sapiens 26-232 -8.410 10  sp|P12111|CO6A3_HUMAN(removed signalp:1-25) Collagen alpha-3(VI) chain OS=Homo sapiens GN=COL6A3 PE=1 SV=5 (Range: 2551-2850)
HGM_OVER 77-218 -4.010 15  PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
JCSG0516 2-281 -123.000 58  PL0541G NP_907888.1 402024 Purified-2009-07-24
NEW_HUMAN_DOMAINS 1-267 -5.470 13  sp|Q9Y2V0|CO041_HUMAN Uncharacterized protein C15orf41 OS=Homo sapiens GN=C15orf41 PE=2 SV=2 (Range: 1-281)
PDB0516 4-186 -6.410 14  1q6u_A mol:protein length:245 FKBP-type peptidyl-prolyl cis-trans isomerase
PfamA30U 11-278 -119.000 56  PF05681.12; D4KEY3_9FIRM/11-279; Fumarate hydratase (Fumerase)
SCOP206 134-236 -7.090 13  d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
VFDB 1-235 -5.140 11  VFG012833(gi:56404034) (ipaH1.4) type III secretion system effector ipaH1.4, E3 ubiquitin ligase [T3SS (SS011)] [Shigella flexneri 2a str. 301]
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 COG0516 7-44 -7.870 13  [W] KOG3544 Collagens (type IV and type XIII), and related proteins
H.sapiens 9-39 -7.340 12  sp|Q03692|COAA1_HUMAN(removed signalp:1-18) Collagen alpha-1(X) chain OS=Homo sapiens GN=COL10A1 PE=1 SV=2 (Range: 301-600)
HGM_OVER 1-43 -2.290 23  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 11-47 -5.820 18  RH9923E ZP_02037848.1 416195 Selected-2009-12-04
NEW_HUMAN_DOMAINS 25-38 -6.110 42  sp|Q5VYV7|CT094_HUMAN UPF0492 protein C20orf94 OS=Homo sapiens GN=C20orf94 PE=1 SV=1 (Range: 1-54)
PDB0516 33-47 -5.510 26  2lsm_A mol:protein length:61 DNA-packaging protein FI
PfamA30U 22-41 -5.770 20  PF10659.7; Q57TR4_TRYB2/411-523; Trypanosome variant surface glycoprotein C-terminal domain
SCOP206 2-47 -4.680 24  d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
VFDB 9-39 -3.270 16  VFG042444(gi:5523844) (afaD-VIII) AfaD-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89]
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 COG0516 1-182 -88.300 37  [C] COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
H.sapiens 2-126 -6.750 16  sp|Q92954|PRG4_HUMAN(removed signalp:1-24) Proteoglycan 4 OS=Homo sapiens GN=PRG4 PE=1 SV=2 (Range: 1051-1350)
HGM_OVER 27-168 -3.570 12  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
JCSG0516 1-182 -102.000 61  TB0541F 15026155 357125 Purified-2004-05-28
NEW_HUMAN_DOMAINS 9-109 -5.570 19  tr|A6NMH3|A6NMH3_HUMAN Uncharacterized protein OS=Homo sapiens GN=TNNI3K PE=4 SV=1 (Range: 25-169)
PDB0516 1-175 -83.100 42  2isb_A mol:protein length:192 Fumarase
PfamA30U 1-175 -84.500 39  PF05683.10; W4Y8Y1_STRPU/30-236; Fumarase C-terminus
SCOP206 1-175 -83.000 42  d2isba2 c.8.9.1 (A:1-180) Fumarate hydratase class I beta subunit {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 2-159 -6.120 20  VFG000291(gi:15645157) (cagU) type IV secretion system protein Cag11/CagU [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 COG0516 2-325 -76.700 19  [GQ] KOG2741 Dimeric dihydrodiol dehydrogenase
H.sapiens 22-329 -102.000 26  sp|Q9UQ10|DHDH_HUMAN(removed signalp:1-23) Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Homo sapiens GN=DHDH PE=1 SV=1
HGM_OVER 15-212 -4.510 12  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
JCSG0516 3-329 -105.000 25  MA10727A NP_055290.1 400079 Purified-2009-03-13
NEW_HUMAN_DOMAINS 3-120 -4.830 12  sp|P60228|EIF3E_HUMAN Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1 (Range: 139-291)
PDB0516 1-324 -105.000 23  3evn_A mol:protein length:329 Oxidoreductase, Gfo/Idh/MocA family
PfamA30U 4-119 -26.300 15  PF01408.20; YEAH_SCHPO/36-187; Oxidoreductase family, NAD-binding Rossmann fold
125-245 -17.100 PF08635.8; A0A0D1E5T6_USTMA/241-382; Putative oxidoreductase C terminal
SCOP206 3-185 -69.400 25  d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
128-290 -35.600 18  d1ydwa2 d.81.1.5 (A:134-304) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 2-328 -43.400 14  VFG000038(gi:33591351) (bplA) probable oxidoreductase [LPS (VF0033)] [Bordetella pertussis Tohama I]
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 COG0516 1-247 -74.900 27  [KG] COG1349 Transcriptional regulators of sugar metabolism
H.sapiens 10-215 -9.280 16  sp|Q14232|EI2BA_HUMAN Translation initiation factor eIF-2B subunit alpha OS=Homo sapiens GN=EIF2B1 PE=1 SV=1
HGM_OVER 1-225 -6.510 PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
JCSG0516 1-247 -108.000 33  FH7660A NP_814469.1 367165 Crystal|NMR-2006-07-08
NEW_HUMAN_DOMAINS 5-50 -6.210 15  sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4 (Range: 615-711)
PDB0516 1-57 -19.700 21  4hob_A mol:protein length:69 Putative uncharacterized protein
3-167 -11.000 12  3sqn_A mol:protein length:485 Conserved domain protein
79-212 -10.700 23  3ixq_A mol:protein length:226 Ribose-5-phosphate isomerase A
PfamA30U 4-126 -27.200 12  PF06163.9; A0A070SGS2_ECOLX/1-127; Bacterial protein of unknown function (DUF977 topsan)
76-232 -55.300 26  PF00455.20; A9CFA5_AGRFC/78-235; DeoR C terminal sensor domain
SCOP206 1-58 -15.800 17  d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
79-211 -10.700 18  d1uj6a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]}
VFDB 1-76 -18.600 10  VFG012327(gi:91210136) (sfaC) S fimbrial switch regulatory protein SfaC [S fimbriae (VF0222)] [Escherichia coli UTI89]
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 COG0516 1-304 -88.800 26  [G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB)
H.sapiens 4-297 -25.900 16  sp|Q9H477|RBSK_HUMAN Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1
HGM_OVER 161-304 -4.730 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;
JCSG0516 1-304 -82.200 27  TM0828 TM0828 282698 PDB-2002-10-15
NEW_HUMAN_DOMAINS 69-227 -5.000 17  sp|Q8N8M0|CG052_HUMAN Putative N-acetyltransferase C7orf52 OS=Homo sapiens GN=C7orf52 PE=2 SV=2 (Range: 161-369)
PDB0516 1-304 -113.000 43  2jg5_A mol:protein length:306 FRUCTOSE 1-PHOSPHATE KINASE
PfamA30U 24-279 -19.200 16  PF00294.22; ADK_YEAST/21-336; pfkB family carbohydrate kinase
SCOP206 1-304 -113.000 43  d2jg5a_ c.72.1.0 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}
VFDB 15-304 -17.800 17  VFG002027(gi:15792474) (hldE) bifunctional D-beta-D-heptose 7-phosphate kinase/D-beta-D-heptose 1-phosphate adenylyltransferase [LOS (VF0326)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 COG0516 7-263 -45.600 21  [G] COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain
172-295 -66.700 49  [G] COG1445 Phosphotransferase system fructose-specific component IIB
302-641 -108.000 54  [G] COG1299 Phosphotransferase system, fructose-specific IIC component
H.sapiens 1-148 -27.700 16  sp|Q8NBS3|S4A11_HUMAN Sodium bicarbonate transporter-like protein 11 OS=Homo sapiens GN=SLC4A11 PE=1 SV=2 (Range: 1-300)
HGM_OVER 118-274 -4.330 14  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
JCSG0516 3-150 -25.800 24  XB5513A NP_645125.1 358651 Purified-2005-03-24
NEW_HUMAN_DOMAINS 500-586 -6.210 sp|Q68DU8|KCD16_HUMAN BTB/POZ domain-containing protein KCTD16 OS=Homo sapiens GN=KCTD16 PE=2 SV=1 (Range: 165-283)
PDB0516 1-636 -9.910 12  4yzf_A mol:protein length:911 Band 3 anion transport protein
2-149 -48.500 28  2a0j_A mol:protein length:149 PTS system, nitrogen regulatory IIA protein
173-278 -66.000 51  2r4q_A mol:protein length:106 Phosphotransferase system (PTS) fructose-spec
PfamA30U 5-146 -41.100 20  PF00359.20; A8AYR4_STRGC/491-627; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
319-641 -46.200 18  PF13303.4; Q9A1Q9_STRP1/29-336; Phosphotransferase system, EIIC
SCOP206 1-150 -44.900 27  d1a6ja_ d.112.1.1 (A:) Nitrogen regulatory bacterial protein IIa-ntr {Escherichia coli [TaxId: 562]}
176-278 -65.600 53  d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC component FruA, middle domain {Bacillus subtilis [TaxId: 1423]}
VFDB 314-642 -5.550 18  VFG010882(gi:52841097) (ccmF) cytochrome c heme lyase subunit CcmF [Cytochrome c muturation (ccm) locus (CVF358)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 COG0516 1-585 -185.000 53  [O] COG0443 Molecular chaperone
H.sapiens 4-482 -117.000 29  sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1
226-531 -114.000 54  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 301-600)
272-565 -83.000 42  sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1 (Range: 301-600)
HGM_OVER 91-472 -4.410 11  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
JCSG0516 1-585 -185.000 51  TM0373 TM0373 282248 Purified-2001-03-14
NEW_HUMAN_DOMAINS 377-479 -5.700 17  sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2 (Range: 520-675)
PDB0516 1-585 -178.000 52  2kho_A mol:protein length:605 Heat shock protein 70
PfamA30U 4-585 -179.000 52  PF00012.18; HSP7E_DROME/54-653; Hsp70 protein
SCOP206 4-156 -67.700 34  d4gnia1 c.55.1.0 (A:13-196) automated matches {Chaetomium thermophilum [TaxId: 759272]}
159-353 -64.600 42  d3i33a2 c.55.1.1 (A:190-384) automated matches {Human (Homo sapiens) [TaxId: 9606]}
366-483 -73.500 65  d4f01a1 b.130.1.1 (A:389-506) automated matches {Escherichia coli K-12 [TaxId: 83333]}
484-585 -33.200 19  d4f01a2 a.8.4.1 (A:507-602) automated matches {Escherichia coli K-12 [TaxId: 83333]}
VFDB 3-350 -9.030 13  VFG010479(gi:52841162) (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 COG0516 4-139 -10.800 15  [D] COG3599 Cell division initiation protein
4-177 -9.670 [R] KOG4398 Predicted coiled-coil protein
H.sapiens 2-176 -9.950 sp|O43490|PROM1_HUMAN Prominin-1 OS=Homo sapiens GN=PROM1 PE=1 SV=1 (Range: 151-450)
HGM_OVER 2-127 -6.030 15  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
JCSG0516 38-158 -9.940 14  TM1614 TM1614 283471 Purified-2001-11-20
NEW_HUMAN_DOMAINS 1-145 -6.300 sp|Q0VDD8|DYH14_HUMAN Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3 (Range: 601-867)
PDB0516 2-275 -7.690 4m0m_A mol:protein length:756 Putative uncharacterized protein
PfamA30U 2-172 -10.200 PF05478.9; F1S5C8_PIG/18-820; Prominin
SCOP206 36-150 -7.400 10  d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Tobacco hornworm (Manduca sexta) [TaxId: 7130]}
VFDB 42-149 -10.200 13  VFG002470(gi:53722573) (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 COG0516 2-226 -76.400 35  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
H.sapiens 3-161 -35.600 14  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
3-208 -18.500 12  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
HGM_OVER 64-212 -3.100 12  PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
JCSG0516 2-230 -89.800 43  TM1655 TM1655 283512 Selected-2001-10-12
NEW_HUMAN_DOMAINS 1-112 -27.100 13  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB0516 2-227 -88.500 32  2oqr_A mol:protein length:230 Sensory transduction protein regX3
PfamA30U 3-108 -48.400 28  PF00072.22; RSSB_ECOLI/10-121; Response regulator receiver domain
150-226 -27.200 32  PF00486.26; I0DPC2_PROSM/145-220; Transcriptional regulatory protein, C terminal
SCOP206 2-120 -59.200 31  d2qzja_ c.23.1.0 (A:) automated matches {Clostridium difficile [TaxId: 272563]}
2-170 -46.400 17  d3rqia_ c.23.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}
126-227 -44.300 33  d2k4ja1 a.4.6.0 (A:13-115) automated matches {Helicobacter pylori [TaxId: 85963]}
VFDB 1-230 -71.600 33  VFG001386(gi:15607897) (phoP) Possible two component system response transcriptional positive regulator PhoP [PhoP (VF0286)] [Mycobacterium tuberculosis H37Rv]
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 COG0516 125-427 -39.400 17  [T] COG0642 Signal transduction histidine kinase
H.sapiens 155-428 -18.500 15  sp|Q5CZC0|FSIP2_HUMAN Fibrous sheath-interacting protein 2 OS=Homo sapiens GN=FSIP2 PE=1 SV=4 (Range: 4201-4500)
HGM_OVER 150-390 -4.090 PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
JCSG0516 125-427 -49.400 23  TT16376A DHAF_12NOV03_CONTIG1084_REVISED_GENE3134 404635 Selected-2009-08-14
NEW_HUMAN_DOMAINS 193-335 -5.720 12  sp|Q8IXS2|CCD65_HUMAN Coiled-coil domain-containing protein 65 OS=Homo sapiens GN=CCDC65 PE=1 SV=2 (Range: 35-180)
PDB0516 126-427 -34.700 18  4biu_A mol:protein length:298 SENSOR PROTEIN CPXA
182-423 -41.700 21  4q20_A mol:protein length:268 Sensor protein DivL
PfamA30U 206-270 -14.200 24  PF00512.23; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
223-422 -10.600 12  PF10090.7; V5SF53_9RHIZ/32-212; Histidine phosphotransferase
318-428 -20.400 27  PF02518.24; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
SCOP206 192-273 -19.400 23  d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
274-423 -25.200 24  d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
VFDB 60-426 -10.900 11  VFG002192(gi:29376363) (fsrC) histidine kinase, putative [Fsr (VF0360)] [Enterococcus faecalis V583]
125-423 -35.800 19  VFG009810(gi:15607898) (phoR) Possible two component system response sensor kinase membrane associated PhoR [PhoP/R (CVF331)] [Mycobacterium tuberculosis H37Rv]
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 COG0516 17-761 -144.000 20  [CE] KOG0453 Aconitase/homoaconitase (aconitase superfamily)
H.sapiens 17-265 -78.300 26  sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1 SV=2 (Range: 1-300)
116-431 -91.900 26  sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1 SV=2 (Range: 151-450)
266-566 -55.400 20  sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1 SV=2 (Range: 301-600)
432-733 -51.900 20  sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1 SV=2 (Range: 451-750)
HGM_OVER 153-340 -2.790 11  HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;
JCSG0516 43-487 -83.000 24  TM0291 TM0291 282167 Purified-2005-02-03
545-761 -21.000 21  TM0292 TM0292 282168 Purified-2001-09-05
NEW_HUMAN_DOMAINS 260-318 -5.460 tr|F5H5G4|F5H5G4_HUMAN Uncharacterized protein OS=Homo sapiens GN=WBP11 PE=4 SV=1 (Range: 94-194)
PDB0516 17-761 -148.000 21  1aco_A mol:protein length:754 ACONITASE
PfamA30U 47-479 -51.600 21  PF00330.18; D2R1Y9_PIRSD/11-461; Aconitase family (aconitate hydratase)
549-759 -12.900 13  PF06434.11; Q01EA0_OSTTA/235-442; Aconitate hydratase 2 N-terminus
550-696 -44.700 23  PF00694.17; ACON_BOVIN/582-712; Aconitase C-terminal domain
SCOP206 17-520 -111.000 23  d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
517-761 -50.400 20  d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
VFDB 10-737 -5.440 10  VFG000165(gi:15599421) (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 COG0516 49-403 -34.400 18  [R] COG0628 Predicted permease
H.sapiens 188-433 -26.700 14  sp|Q9H330|CI005_HUMAN Transmembrane protein C9orf5 OS=Homo sapiens GN=C9orf5 PE=1 SV=2 (Range: 601-900)
HGM_OVER 259-371 -5.150 15  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
JCSG0516 46-405 -49.700 19  TM1187 TM1187 283052 Purified-2001-11-06
NEW_HUMAN_DOMAINS 308-381 -6.700 20  sp|Q8TDJ6|DMXL2_HUMAN DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2 (Range: 2314-2389)
PDB0516 277-405 -7.890 13  4hzu_S mol:protein length:166 Predicted membrane protein
PfamA30U 62-403 -36.200 18  PF01594.14; Y338_HAEIN/10-332; AI-2E family transporter
SCOP206 294-430 -6.240 10  d1w7ca3 d.17.2.1 (A:170-315) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]}
VFDB 60-368 -6.700 VFG000019(gi:33594646) (ptlD) Ptl Type IV secretion system VirB6 homolog protein PtlA [Ptx (VF0026)] [Bordetella pertussis Tohama I]
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 COG0516 1-166 -14.700 [D] KOG1126 DNA-binding cell division cycle control protein
1-200 -13.700 19  [B] KOG1156 N-terminal acetyltransferase
9-239 -12.700 12  [DO] KOG1174 Anaphase-promoting complex (APC), subunit 7
91-454 -9.870 [R] KOG2295 C2H2 Zn-finger protein
662-863 -9.780 13  [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase)
H.sapiens 9-241 -13.200 12  sp|Q9UJX3|APC7_HUMAN Anaphase-promoting complex subunit 7 OS=Homo sapiens GN=ANAPC7 PE=1 SV=4
10-210 -16.400 17  sp|Q9Y5Q9|TF3C3_HUMAN General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1 (Range: 151-450)
HGM_OVER 1-155 -5.170 12  PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
JCSG0516 1-523 -20.800 MA16111A NP_055448.1 400166 Selected-2008-12-22
23-862 -19.500 SP17586C NP_439153.1 411588 Selected-2009-11-12
599-877 -40.600 18  MJ3655B NP_436729.1 403700 Purified-2009-09-18
NEW_HUMAN_DOMAINS 1-200 -9.130 13  sp|Q9NVR2|INT10_HUMAN Integrator complex subunit 10 OS=Homo sapiens GN=INTS10 PE=1 SV=2 (Range: 1-210)
PDB0516 1-169 -17.100 14  5aio_A mol:protein length:448 TRANSCRIPTION FACTOR TAU 131 KDA SUBUNIT
1-208 -14.000 13  3qky_A mol:protein length:261 Outer membrane assembly lipoprotein YfiO
1-241 -13.200 13  4rg6_A mol:protein length:560 Cell division cycle protein 27 homolog
605-877 -40.200 17  3syk_A mol:protein length:309 Protein CbbX
PfamA30U 10-194 -12.000 15  PF13429.4; Q39U81_GEOMG/198-480; Tetratricopeptide repeat
16-283 -11.200 PF12569.6; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
SCOP206 2-190 -9.940 13  d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}
16-170 -11.500 13  d2vsna1 a.118.8.1 (A:22-192) O-GlcNAc transferase, OGT {Xanthomonas campestris [TaxId: 314565]}
VFDB 23-862 -19.500 VFG000337(gi:16272928) (iga1) immunoglobin A1 protease [IgA1 protease (VF0045)] [Haemophilus influenzae Rd KW20]
564-876 -42.900 16  VFG002380(gi:15611004) (eccA1) ESX-1 type VII secretion system AAA+ ATPase EccA1 [ESX-1 (VF0315)] [Mycobacterium tuberculosis H37Rv]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.