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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 COG1214 3-452 -118.000 33  [L] COG0593 ATPase involved in DNA replication initiation
H.sapiens 123-452 -11.800 12  sp|Q99741|CDC6_HUMAN Cell division control protein 6 homolog OS=Homo sapiens GN=CDC6 PE=1 SV=1
124-374 -12.400 14  sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 301-600)
149-290 -12.600 19  sp|O43933|PEX1_HUMAN Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1 (Range: 451-750)
HGM_OVER 184-360 -3.160 15  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
JCSG1214 1-451 -118.000 27  C.LS21333A NP_418828.1 430427 Purified-2014-07-08
NEW_HUMAN_DOMAINS 148-257 -5.860 20  sp|Q7Z401|MYCPP_HUMAN C-myc promoter-binding protein OS=Homo sapiens GN=DENND4A PE=1 SV=2 (Range: 1715-1863)
PDB1214 7-453 -126.000 34  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
PfamA27U 5-71 -11.800 20  PF11638.3; DNAA_LAWIP/5-67; DnaA N-terminal domain
113-334 -107.000 60  PF00308.13; DNAA_STRCO/317-535; Bacterial dnaA protein
360-429 -37.700 42  PF08299.6; DNAA_PSEPU/414-483; Bacterial dnaA protein helix-turn-helix
SCOP175 111-329 -99.600 38  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
346-453 -47.300 24  d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
VFDB 116-299 -14.400 20  VFG1460 (gi:24527992) y1094 - ORF B protein [Escherichia coli 536]
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 COG1214 1-368 -104.000 22  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
H.sapiens 136-370 -12.600 11  sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1
HGM_OVER 67-345 -3.280 PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
JCSG1214 1-370 -122.000 100  MH15438A YP_002935947.1 394339 PDB-2011-07-20
NEW_HUMAN_DOMAINS 128-245 -3.890 14  sp|Q96NH3|BROMI_HUMAN Protein broad-minded OS=Homo sapiens GN=BROMI PE=2 SV=4 (Range: 941-1070)
PDB1214 1-370 -121.000 100  3t0p_A mol:protein length:371 DNA polymerase III, beta subunit
PfamA27U 1-119 -55.500 40  PF00712.14; DPO3B_BACSU/1-127; DNA polymerase III beta subunit, N-terminal domain
128-243 -55.200 30  PF02767.11; DPO3B_PROMI/129-244; DNA polymerase III beta subunit, central domain
245-364 -47.700 30  PF02768.10; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
SCOP175 1-120 -49.100 21  d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
122-244 -56.700 17  d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
245-366 -49.200 25  d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
VFDB 1-323 -4.120 VFG1017 (gi:31983695) icsP - VirG-specific protease [Shigella flexneri (serotype 2a) 301] (VF0122)
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 COG1214 3-70 -44.200 39  [S] COG2501 Uncharacterized conserved protein
H.sapiens 2-62 -11.400 13  sp|Q9P0P8|CF203_HUMAN Uncharacterized protein C6orf203 OS=Homo sapiens GN=C6orf203 PE=1 SV=1
HGM_OVER 1-69 -2.850 15  PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
JCSG1214 13-62 -13.800 20  SP0223F ZP_04009405.1 413831 Purified-2010-09-29
NEW_HUMAN_DOMAINS 7-70 -6.210 18  sp|Q02241|KIF23_HUMAN Kinesin-like protein KIF23 OS=Homo sapiens GN=KIF23 PE=1 SV=3 (Range: 820-895)
PDB1214 9-70 -41.100 35  1p9k_A mol:protein length:79 orf, hypothetical protein
PfamA27U 6-70 -44.700 56  PF13275.1; D4IXS8_BUTFI/4-68; S4 domain
SCOP175 9-70 -41.100 35  d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
VFDB 5-59 -4.650 16  VFG1393 (gi:15608485) fadD33 - fadD33 [Mycobacterium tuberculosis H37Rv] (VF0308)
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 COG1214 1-359 -103.000 23  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
H.sapiens 1-292 -11.700 16  sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2 (Range: 1-300)
3-261 -16.300 12  sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens GN=SMC5 PE=1 SV=2 (Range: 1-300)
HGM_OVER 274-356 -2.810 10  PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;
JCSG1214 1-335 -21.300 16  NT12358C DHAF_12NOV03_CONTIG1086_REVISED_GENE3509 378730 Purified-2008-01-24
NEW_HUMAN_DOMAINS 172-312 -6.120 10  sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1 (Range: 899-1057)
PDB1214 1-362 -105.000 28  2o5v_A mol:protein length:359 DNA replication and repair protein recF
PfamA27U 1-358 -18.400 13  PF11398.3; Q6D3T4_ERWCT/1-377; Protein of unknown function (DUF2813 topsan)
SCOP175 1-349 -28.200 20  g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
VFDB 1-356 -21.600 13  VFG0564 (gi:16767037) sugR - ATP binding protein [Salmonella enterica (serovar typhimurium) LT2]
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 COG1214 5-645 -151.000 53  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
H.sapiens 2-249 -52.700 24  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 1-300)
89-400 -62.600 19  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 151-450)
247-544 -74.600 25  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 301-600)
403-645 -60.900 29  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 451-750)
HGM_OVER 464-634 -4.410 14  HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;
JCSG1214 10-645 -192.000 53  TM0833 TM0833 282703 Purified-2005-04-05
NEW_HUMAN_DOMAINS 255-396 -5.960 sp|Q8N6G2|CM026_HUMAN Uncharacterized protein C13orf26 OS=Homo sapiens GN=C13orf26 PE=2 SV=1 (Range: 105-289)
PDB1214 3-644 -184.000 54  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
PfamA27U 230-400 -80.600 48  PF00204.20; Q9R3E4_ACISP/115-285; DNA gyrase B
540-638 -29.300 19  PF16898; F5HDJ4.1/657-784; C-terminal associated domain of TOPRIM
568-634 -43.900 49  PF00986.16; Q6MRR8_BDEBA/731-795; DNA gyrase B subunit, carboxyl terminus
SCOP175 9-229 -89.000 53  d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
230-401 -81.900 47  d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]}
415-635 -27.200 30  d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 26-539 -8.660 12  VFG1568 (gi:23954252) orf34 - hypothetical protein [Escherichia coli 536]
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 COG1214 3-830 -207.000 43  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
H.sapiens 7-198 -41.900 30  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 601-900)
75-386 -57.800 23  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 751-1050)
232-485 -30.800 15  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 901-1200)
HGM_OVER 403-490 -3.050 PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
JCSG1214 7-811 -197.000 42  TM1084 TM1084 282951 Purified-2001-04-24
NEW_HUMAN_DOMAINS 147-278 -5.310 19  tr|E5RG91|E5RG91_HUMAN Uncharacterized protein OS=Homo sapiens GN=VPS37A PE=4 SV=1 (Range: 130-317)
PDB1214 1-494 -145.000 61  2xco_A mol:protein length:726 DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A
31-750 -133.000 37  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
505-829 -67.000 39  3uc1_A mol:protein length:327 DNA gyrase subunit A
PfamA27U 33-468 -87.200 30  PF00521.15; A1ZXC5_9BACT/29-447; DNA gyrase/topoisomerase IV, subunit A
614-659 -13.600 47  PF03989.8; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
SCOP175 31-492 -131.000 56  d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
507-809 -62.500 31  d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
VFDB 45-766 -6.970 10  VFG1960 (gi:15792750) Cj1432c - putative sugar transferase [Campylobacter jejuni NCTC 11168] (VF0323)
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 COG1214 7-281 -92.200 29  [C] COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
H.sapiens 26-232 -8.950 10  sp|P12111|CO6A3_HUMAN(removed signalp:1-25) Collagen alpha-3(VI) chain OS=Homo sapiens GN=COL6A3 PE=1 SV=5 (Range: 2551-2850)
HGM_OVER 77-219 -3.300 15  PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
JCSG1214 2-281 -120.000 58  PL0541G NP_907888.1 402024 Purified-2009-07-24
NEW_HUMAN_DOMAINS 1-267 -5.480 14  sp|Q9Y2V0|CO041_HUMAN Uncharacterized protein C15orf41 OS=Homo sapiens GN=C15orf41 PE=2 SV=2 (Range: 1-281)
PDB1214 56-164 -7.080 15  2dbj_A mol:protein length:124 Proto-oncogene tyrosine-protein kinase MER pr
PfamA27U 10-281 -117.000 54  PF05681.9; A7VNZ1_9CLOT/21-293; Fumarate hydratase (Fumerase)
SCOP175 188-278 -7.680 13  d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
VFDB 38-259 -5.070 14  VFG2403 (gi:15608933) mycP5 - PROBABLE PROLINE RICH MEMBRANE-ANCHORED MYCOSIN MYCP5 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-5) [Mycobacterium tuberculosis H37Rv] (VF0402)
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 COG1214 2-47 -6.180 11  [W] KOG3544 Collagens (type IV and type XIII), and related proteins
H.sapiens 5-47 -6.960 12  sp|Q9Y215|COLQ_HUMAN(removed signalp:1-29) Acetylcholinesterase collagenic tail peptide OS=Homo sapiens GN=COLQ PE=1 SV=2
HGM_OVER 1-47 -2.320 19  PB045813 Q5LF03_BACFN/1-275 PB045813; Pfam-B_45813;
JCSG1214 6-31 -5.500 19  SP2008N YP_795874.1 411883 Purified-2010-09-20
NEW_HUMAN_DOMAINS 25-38 -6.160 42  sp|Q5VYV7|CT094_HUMAN UPF0492 protein C20orf94 OS=Homo sapiens GN=C20orf94 PE=1 SV=1 (Range: 1-54)
PDB1214 33-47 -5.180 26  2lsm_A mol:protein length:61 DNA-packaging protein FI
PfamA27U 1-41 -6.050 24  PF06637.6; PLVAP_HUMAN/1-442; PV-1 protein (PLVAP)
SCOP175 2-47 -4.530 24  d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
VFDB 19-47 -5.370 13  VFG1320 (gi:21282743) isdD - conserved hypothetical protein [Staphylococcus aureus MW2] (VF0015)
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 COG1214 1-182 -91.900 37  [C] COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
H.sapiens 29-127 -6.900 15  sp|Q8NFU3|TSTD1_HUMAN Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 OS=Homo sapiens GN=TSTD1 PE=1 SV=3
HGM_OVER 88-163 -3.230 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
JCSG1214 3-182 -100.000 42  TB0541O 16419267 357898 Crystal|NMR-2004-08-16
NEW_HUMAN_DOMAINS 55-166 -6.960 11  tr|E9PBY9|E9PBY9_HUMAN Uncharacterized protein OS=Homo sapiens GN=C10orf93 PE=4 SV=1 (Range: 41-150)
PDB1214 1-175 -81.900 42  2isb_A mol:protein length:192 Fumarase
PfamA27U 1-178 -90.200 42  PF05683.7; A0KKZ8_AERHH/379-585; Fumarase C-terminus
SCOP175 1-174 -81.500 43  d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 40-170 -6.390 19  VFG1416 (gi:15610737) panD - panD [Mycobacterium tuberculosis H37Rv] (VF0319)
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 COG1214 2-326 -87.200 19  [GQ] KOG2741 Dimeric dihydrodiol dehydrogenase
H.sapiens 22-329 -112.000 26  sp|Q9UQ10|DHDH_HUMAN(removed signalp:1-23) Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Homo sapiens GN=DHDH PE=1 SV=1
HGM_OVER 32-212 -4.850 12  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
JCSG1214 3-329 -114.000 25  MA10727A NP_055290.1 400079 Purified-2009-03-13
NEW_HUMAN_DOMAINS 3-120 -4.900 12  sp|P60228|EIF3E_HUMAN Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1 (Range: 139-291)
PDB1214 3-329 -115.000 24  2o48_X mol:protein length:334 Dimeric dihydrodiol dehydrogenase
PfamA27U 4-121 -52.800 22  PF01408.17; CBAC_COMTE/1-120; Oxidoreductase family, NAD-binding Rossmann fold
125-245 -18.200 10  PF08635.5; Q4PF44_USTMA/241-382; Putative oxidoreductase C terminal
SCOP175 3-185 -72.900 24  d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
128-290 -41.600 18  d1ydwa2 d.81.1.5 (A:134-304) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 1-328 -48.800 14  VFG0038 (gi:33591351) bplA - probable oxidoreductase [Bordetella pertussis Tohama I] (VF0033)
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 COG1214 1-247 -78.800 27  [KG] COG1349 Transcriptional regulators of sugar metabolism
H.sapiens 3-99 -9.530 21  sp|P55265|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4 (Range: 1-300)
HGM_OVER 1-225 -5.400 10  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
JCSG1214 1-247 -104.000 33  FH7660A NP_814469.1 367165 Crystal|NMR-2006-07-08
NEW_HUMAN_DOMAINS 5-50 -6.560 15  sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4 (Range: 615-711)
PDB1214 1-51 -18.400 23  4hob_A mol:protein length:69 Putative uncharacterized protein
4-86 -12.200 20  2wte_A mol:protein length:244 CSA3
79-212 -11.500 23  3ixq_A mol:protein length:226 Ribose-5-phosphate isomerase A
PfamA27U 1-113 -33.000 11  PF06163.6; Q8XAE8_ECO57/1-127; Bacterial protein of unknown function (DUF977 topsan)
75-232 -59.300 25  PF00455.17; A9CFA5_AGRT5/77-236; DeoR C terminal sensor domain
SCOP175 1-57 -16.100 17  d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
79-212 -12.600 17  d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]}
VFDB 1-240 -17.000 16  VFG0483 (gi:16764732) orf408 - putative regulatory protein, deoR family [Salmonella enterica (serovar typhimurium) LT2]
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 COG1214 1-304 -87.300 27  [G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB)
H.sapiens 4-297 -25.900 16  sp|Q9H477|RBSK_HUMAN Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1
HGM_OVER 161-304 -4.260 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;
JCSG1214 1-304 -81.600 27  TM0828 TM0828 282698 PDB-2002-10-15
NEW_HUMAN_DOMAINS 69-227 -5.050 17  sp|Q8N8M0|CG052_HUMAN Putative N-acetyltransferase C7orf52 OS=Homo sapiens GN=C7orf52 PE=2 SV=2 (Range: 161-369)
PDB1214 1-304 -108.000 43  2jg5_A mol:protein length:306 FRUCTOSE 1-PHOSPHATE KINASE
PfamA27U 22-282 -21.800 16  PF00294.19; ADK_YEAST/21-336; pfkB family carbohydrate kinase
SCOP175 1-304 -107.000 44  d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}
VFDB 4-299 -25.500 17  VFG0483 (gi:16764732) orf408 - putative regulatory protein, deoR family [Salmonella enterica (serovar typhimurium) LT2]
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 COG1214 7-266 -53.200 21  [G] COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain
172-295 -63.200 49  [G] COG1445 Phosphotransferase system fructose-specific component IIB
302-641 -111.000 54  [G] COG1299 Phosphotransferase system, fructose-specific IIC component
H.sapiens 1-148 -28.700 16  sp|Q8NBS3|S4A11_HUMAN Sodium bicarbonate transporter-like protein 11 OS=Homo sapiens GN=SLC4A11 PE=1 SV=2 (Range: 1-300)
8-272 -19.000 11  sp|P04920|B3A2_HUMAN Anion exchange protein 2 OS=Homo sapiens GN=SLC4A2 PE=1 SV=4 (Range: 451-750)
HGM_OVER 118-274 -4.870 14  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
JCSG1214 3-150 -24.600 24  XB5513A NP_645125.1 358651 Purified-2005-03-24
NEW_HUMAN_DOMAINS 119-205 -6.120 10  sp|Q96KM6|Z512B_HUMAN Zinc finger protein 512B OS=Homo sapiens GN=ZNF512B PE=1 SV=1 (Range: 688-778)
PDB1214 2-149 -54.200 28  2a0j_A mol:protein length:149 PTS system, nitrogen regulatory IIA protein
173-278 -61.700 51  2r4q_A mol:protein length:106 Phosphotransferase system (PTS) fructose-spec
PfamA27U 5-146 -42.200 20  PF00359.17; A8AYR4_STRGC/491-627; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
317-642 -51.000 18  PF13303.1; Q1J8T2_STRPF/28-337; Phosphotransferase system, EIIC
SCOP175 1-150 -52.800 27  d1a6ja_ d.112.1.1 (A:) Nitrogen regulatory bacterial protein IIa-ntr {Escherichia coli [TaxId: 562]}
176-278 -61.300 53  d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC component FruA, middle domain {Bacillus subtilis [TaxId: 1423]}
VFDB 1-573 -6.430 VFG1316 (gi:21282026) geh - glycerol ester hydrolase [Staphylococcus aureus MW2] (VF0012)
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 COG1214 1-585 -174.000 53  [O] COG0443 Molecular chaperone
H.sapiens 4-482 -119.000 29  sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1
226-531 -109.000 54  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 301-600)
268-568 -85.800 43  sp|P11021|GRP78_HUMAN(removed signalp:1-18) 78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2 (Range: 301-600)
HGM_OVER 91-472 -4.150 10  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
JCSG1214 1-585 -173.000 51  TM0373 TM0373 282248 Purified-2001-03-14
NEW_HUMAN_DOMAINS 364-479 -8.880 18  sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2 (Range: 520-675)
PDB1214 1-585 -169.000 52  2kho_A mol:protein length:605 Heat shock protein 70
PfamA27U 4-585 -171.000 52  PF00012.15; HSP77_YEASX/32-633; Hsp70 protein
SCOP175 2-160 -63.700 58  d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
160-354 -60.400 42  d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
366-483 -74.400 65  d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
484-585 -33.500 20  d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
VFDB 2-350 -9.790 14  VFG1222 (gi:15600237) pilM - type 4 fimbrial biogenesis protein PilM [Pseudomonas aeruginosa PAO1] (VF0082)
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 COG1214 2-290 -11.000 10  [YU] KOG4460 Nuclear pore complex, Nup88/rNup84 component
H.sapiens 4-178 -10.100 sp|Q6ZNE5|BAKOR_HUMAN Beclin 1-associated autophagy-related key regulator OS=Homo sapiens GN=ATG14 PE=1 SV=1
HGM_OVER 2-128 -5.720 13  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
JCSG1214 1-279 -12.300 10  SP17978A NP_371959.1 413583 Selected-2009-11-12
NEW_HUMAN_DOMAINS 1-145 -6.460 sp|Q0VDD8|DYH14_HUMAN Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3 (Range: 601-867)
PDB1214 1-177 -10.100 10  1bf5_A mol:protein length:575 SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPT
34-284 -10.700 10  1jch_A mol:protein length:551 COLICIN E3
PfamA27U 3-139 -11.300 PF05103.8; Q8DVD4_STRMU/3-144; DivIVA protein
9-285 -10.400 11  PF10168.4; Q707M9_XENLA/4-726; Nuclear pore component
SCOP175 5-149 -9.420 11  d1aepa_ a.63.1.1 (A:) Apolipophorin-III {African locust (Locusta migratoria) [TaxId: 7004]}
VFDB 41-149 -10.100 13  VFG1000 (gi:18462552) mxiN - putative membrane protein [Shigella flexneri (serotype 2a) 301] (VF0118)
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 COG1214 2-229 -83.200 35  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
H.sapiens 3-161 -38.800 14  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
3-207 -18.200 13  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
HGM_OVER 1-115 -3.150 17  HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;
JCSG1214 2-230 -91.500 43  TM1655 TM1655 283512 Selected-2001-10-12
NEW_HUMAN_DOMAINS 1-164 -40.600 12  sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB1214 2-227 -91.800 32  2oqr_A mol:protein length:230 Sensory transduction protein regX3
PfamA27U 1-226 -11.100 PF07688.7; KAIA_SYNY3/5-288; KaiA domain
3-112 -27.800 24  PF00072.19; AGMR_PSEAE/4-117; Response regulator receiver domain
150-226 -31.000 32  PF00486.23; O85058_PROST/114-189; Transcriptional regulatory protein, C terminal
SCOP175 2-120 -57.000 35  d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
130-227 -47.200 34  d1p2fa1 a.4.6.1 (A:121-217) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
VFDB 2-230 -95.400 33  VFG1563 (gi:23954247) orf29 - hypothetical protein [Escherichia coli 536]
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 COG1214 125-427 -44.600 17  [T] COG0642 Signal transduction histidine kinase
H.sapiens 155-428 -26.200 14  sp|Q5CZC0|FSIP2_HUMAN Fibrous sheath-interacting protein 2 OS=Homo sapiens GN=FSIP2 PE=1 SV=4 (Range: 4201-4500)
HGM_OVER 150-390 -4.160 PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
JCSG1214 125-427 -53.800 23  TT16376A DHAF_12NOV03_CONTIG1084_REVISED_GENE3134 404635 Selected-2009-08-14
NEW_HUMAN_DOMAINS 186-335 -5.240 13  sp|Q8IXS2|CCD65_HUMAN Coiled-coil domain-containing protein 65 OS=Homo sapiens GN=CCDC65 PE=1 SV=2 (Range: 35-180)
PDB1214 126-427 -39.100 18  4biu_A mol:protein length:298 SENSOR PROTEIN CPXA
177-427 -43.400 21  4q20_A mol:protein length:268 Sensor protein DivL
PfamA27U 124-404 -12.700 PF04792.7; LCRV_YERPS/1-323; V antigen (LcrV) protein
221-422 -16.700 12  PF10090.4; A4YN87_BRASO/37-219; Uncharacterized protein conserved in bacteria (DUF2328 topsan)
SCOP175 124-404 -12.500 d1r6fa_ e.46.1.1 (A:) Low calcium response locus protein V, LcrV {Yersinia pestis [TaxId: 632]}
192-273 -19.100 23  d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
274-427 -25.900 22  d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
VFDB 60-426 -12.100 13  VFG2192 (gi:29376363) fsrC - Unknown [Enterococcus faecalis V583] (VF0360)
95-427 -45.900 16  VFG1701 (gi:26249399) c3564 - Hypothetical protein [Escherichia coli CFT073]
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 COG1214 25-761 -135.000 21  [CE] KOG0453 Aconitase/homoaconitase (aconitase superfamily)
H.sapiens 17-265 -69.800 26  sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1 SV=2 (Range: 1-300)
116-431 -87.400 26  sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1 SV=2 (Range: 151-450)
266-566 -59.900 17  sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1 SV=2 (Range: 301-600)
432-733 -53.500 16  sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1 SV=2 (Range: 451-750)
HGM_OVER 153-340 -2.770 11  HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;
JCSG1214 41-487 -79.200 24  TM0291 TM0291 282167 Purified-2005-02-03
545-761 -21.500 21  TM0292 TM0292 282168 Purified-2001-09-05
NEW_HUMAN_DOMAINS 260-318 -5.240 tr|F5H5G4|F5H5G4_HUMAN Uncharacterized protein OS=Homo sapiens GN=WBP11 PE=4 SV=1 (Range: 94-194)
PDB1214 17-761 -139.000 20  1aco_A mol:protein length:754 ACONITASE
PfamA27U 44-479 -49.300 21  PF00330.15; LEUC_YEAST/11-471; Aconitase family (aconitate hydratase)
549-761 -13.200 17  PF06434.8; Q0YRL9_9CHLB/171-373; Aconitate hydratase 2 N-terminus
550-696 -42.900 23  PF00694.14; ACON_BOVIN/582-712; Aconitase C-terminal domain
SCOP175 17-525 -101.000 22  d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
526-761 -48.300 17  d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
VFDB 638-753 -11.000 18  VFG1411 (gi:15610124) leuD - leuD [Mycobacterium tuberculosis H37Rv]
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 COG1214 49-404 -37.500 18  [R] COG0628 Predicted permease
H.sapiens 187-433 -30.100 14  sp|Q9H330|CI005_HUMAN Transmembrane protein C9orf5 OS=Homo sapiens GN=C9orf5 PE=1 SV=2 (Range: 601-900)
HGM_OVER 258-371 -5.260 15  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
JCSG1214 46-405 -48.800 19  TM1187 TM1187 283052 Purified-2001-11-06
NEW_HUMAN_DOMAINS 308-381 -6.950 20  tr|B2RTR3|B2RTR3_HUMAN DMXL2 protein OS=Homo sapiens GN=DMXL2 PE=2 SV=1 (Range: 1678-1753)
PDB1214 277-405 -7.430 13  4hzu_S mol:protein length:166 Predicted membrane protein
PfamA27U 62-404 -40.600 18  PF01594.11; Y338_HAEIN/10-332; Domain of unknown function DUF20 topsan
SCOP175 219-385 -6.010 d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
VFDB 90-217 -6.030 16  VFG0091 (gi:15640845) tcpA - toxin co-regulated pilin [Vibrio cholerae N16961] (VF0126)
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 COG1214 9-231 -11.200 13  [DO] KOG1174 Anaphase-promoting complex (APC), subunit 7
16-185 -12.800 16  [D] KOG1126 DNA-binding cell division cycle control protein
H.sapiens 1-215 -13.200 19  sp|Q13099|IFT88_HUMAN Intraflagellar transport protein 88 homolog OS=Homo sapiens GN=IFT88 PE=1 SV=2 (Range: 451-750)
10-191 -14.800 18  sp|Q9Y5Q9|TF3C3_HUMAN General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1 (Range: 151-450)
22-264 -11.400 11  sp|O15550|KDM6A_HUMAN Lysine-specific demethylase 6A OS=Homo sapiens GN=KDM6A PE=1 SV=2 (Range: 301-600)
HGM_OVER 1-155 -5.430 12  PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
JCSG1214 2-811 -22.100 SP17586C NP_439153.1 411588 Selected-2009-11-12
602-877 -37.300 17  MJ3655B NP_436729.1 403700 Purified-2009-09-18
NEW_HUMAN_DOMAINS 1-184 -9.800 15  sp|Q9NVR2|INT10_HUMAN Integrator complex subunit 10 OS=Homo sapiens GN=INTS10 PE=1 SV=2 (Range: 1-210)
PDB1214 1-201 -12.300 19  4i1a_A mol:protein length:391 Response regulator aspartate phosphatase I
15-185 -12.700 17  3asg_A mol:protein length:186 MamA
606-877 -37.000 17  3syk_A mol:protein length:309 Protein CbbX
PfamA27U 10-194 -11.000 14  PF13429.1; Q39U81_GEOMG/198-480; Tetratricopeptide repeat
SCOP175 2-169 -8.680 11  d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}
VFDB 2-811 -22.100 VFG0337 (gi:16272928) iga - immunoglobin A1 protease [Haemophilus influenzae Rd] (VF0045)
564-876 -40.100 16  VFG2380 (gi:15611004) Rv3868 - hypothetical protein [Mycobacterium tuberculosis H37Rv] (VF0315)


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.