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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 PfamA26U 44-126 -6.030 10  PF05048.8; A0B9A8_METTP/209-441; Periplasmic copper-binding protein (NosD)
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 PfamA26U 17-211 -6.870 10  PF09365.5; A5GE98_GEOUR/13-224; Conserved hypothetical protein (DUF2461 topsan)
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 PfamA26U 32-116 -12.500 11  PF00216.16; A1VGI8_DESVV/5-94; Bacterial DNA-binding protein
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 PfamA26U 26-159 -7.030 17  PF08664.5; A8FHF3_BACP2/157-299; YcbB domain
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 PfamA26U 108-176 -52.300 55  PF00366.15; RS17_THEMA/8-76; Ribosomal protein S17
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 PfamA26U 4-54 -7.380 13  PF02950.12; CO16A_CONPL/1-79; Conotoxin
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 PfamA26U 21-116 -6.930 13  PF06232.6; Q2HVW6_MEDTR/41-164; Embryo-specific protein 3, (ATS3)
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 PfamA26U 1-163 -25.000 PF02474.10; A5A959_9BRAD/14-210; Nodulation protein A (NodA)
26-157 -25.800 10  PF13673.1; Q7V9H3_PROMA/20-139; Acetyltransferase (GNAT) domain
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 PfamA26U 16-306 -15.300 11  PF12849.2; A1EKQ7_VIBCH/24-252; PBP superfamily domain
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 PfamA26U 62-174 -6.110 20  PF05836.7; CH16_DROME/29-138; Chorion protein S16
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 PfamA26U 198-279 -7.440 26  PF04998.12; RPB1_CAEEL/820-1416; RNA polymerase Rpb1, domain 5
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 PfamA26U 2-347 -9.830 PF03718.8; P77813_ARTGO/20-620; Glycosyl hydrolase family 49
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 PfamA26U 5-113 -5.800 13  PF02611.10; A8GL49_SERP5/44-265; CDP-diacylglycerol pyrophosphatase
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 PfamA26U 302-538 -23.000 11  PF03882.9; MUKF_SHIFL/1-440; KicB killing factor
327-391 -24.600 30  PF00512.20; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
570-682 -28.200 29  PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 PfamA26U 4-114 -41.900 30  PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain
5-350 -28.200 10  PF08298.6; YEAG_ECOLI/19-380; PrkA AAA domain
127-293 -81.000 46  PF00158.21; Q8E8E7_SHEON/154-320; Sigma-54 interaction domain
388-429 -12.800 31  PF02954.14; Q52200_PSEPU/518-559; Bacterial regulatory protein, Fis family
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 PfamA26U 2-211 -56.800 14  PF09357.5; Q64WJ7_BACFR/81-300; RteC protein
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 PfamA26U 193-313 -6.390 15  PF06936.6; SELS_MOUSE/1-188; Selenoprotein S (SelS)
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 PfamA26U 45-209 -7.140 11  PF12000.3; A4F0P0_9RHOB/24-194; Gkycosyl transferase family 4 group
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 PfamA26U 7-84 -9.200 17  PF06857.6; CITD_ERWCT/2-87; Malonate decarboxylase delta subunit (MdcD)
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 PfamA26U 46-89 -6.570 PF09201.5; A7TFS7_VANPO/1-148; SRX


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.