| # |
Query |
Length |
Result vs. |
Range |
Score |
%id |
Covered by template(s) |
|
| 1 |
gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] |
138 |
COG0113 |
1-135 |
-71.600 |
27 |
[K] COG0781 Transcription termination factor |
|
|
|
|
PDB0113 |
1-136 |
-72.000 |
28 |
3d3b_A mol:protein length:141 N utilization substance protein B |
|
|
|
|
PfamA26U |
3-129 |
-66.500 |
21 |
PF09185.5; Y027_MYCGE/12-151; Domain of unknown function (DUF1948 topsan) |
|
|
|
|
SCOP175 |
1-136 |
-72.400 |
28 |
d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]} |
|
|
| 2 |
gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] |
156 |
COG0113 |
1-156 |
-89.200 |
48 |
[H] COG0054 Riboflavin synthase beta-chain |
|
|
|
|
PDB0113 |
1-156 |
-93.300 |
44 |
1c2y_A mol:protein length:156 PROTEIN (LUMAZINE SYNTHASE) |
|
|
|
|
PfamA26U |
11-154 |
-88.500 |
38 |
PF00885.14; Q5FS93_GLUOX/14-155; 6,7-dimethyl-8-ribityllumazine synthase |
|
|
|
|
SCOP175 |
1-155 |
-93.300 |
50 |
d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]} |
|
|
| 3 |
gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] |
276 |
COG0113 |
1-276 |
-111.000 |
41 |
[M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|
|
|
|
PDB0113 |
9-276 |
-117.000 |
50 |
2ef9_A mol:protein length:267 2-dehydro-3-deoxyphosphooctonate aldolase |
|
|
|
|
PfamA26U |
8-243 |
-12.900 |
16 |
PF00793.15; AROG_HAEIN/32-347; DAHP synthetase I family |
|
|
|
|
73-276 |
-11.500 |
15 |
PF03102.9; A4Y8R3_SHEPC/37-279; NeuB family |
|
|
|
|
SCOP175 |
9-276 |
-118.000 |
51 |
d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]} |
|
|
| 4 |
gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] |
221 |
COG0113 |
2-219 |
-94.300 |
23 |
[P] KOG1578 Predicted carbonic anhydrase involved in protection against oxidative damage |
|
|
|
|
PDB0113 |
2-209 |
-96.500 |
28 |
1ekj_A mol:protein length:221 BETA-CARBONIC ANHYDRASE |
|
|
|
|
PfamA26U |
33-195 |
-85.000 |
26 |
PF00484.14; Q28W87_JANSC/42-203; Carbonic anhydrase |
|
|
|
|
SCOP175 |
2-209 |
-96.100 |
28 |
d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} |
|
|
| 5 |
gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] |
227 |
COG0113 |
2-227 |
-103.000 |
33 |
[F] COG0284 Orotidine-5`-phosphate decarboxylase |
|
|
|
|
PDB0113 |
2-227 |
-104.000 |
35 |
1dbt_A mol:protein length:239 OROTIDINE 5`-PHOSPHATE DECARBOXYLASE |
|
|
|
|
PfamA26U |
2-223 |
-101.000 |
34 |
PF00215.19; PYRF_STRP1/5-224; Orotidine 5`-phosphate decarboxylase / HUMPS family |
|
|
|
|
SCOP175 |
2-227 |
-104.000 |
35 |
d1dbta_ c.1.2.3 (A:) Orotidine 5`-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} |
|
|
| 6 |
gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] |
276 |
COG0113 |
1-276 |
-120.000 |
39 |
[H] COG0414 Panthothenate synthetase |
|
|
|
|
PDB0113 |
1-276 |
-121.000 |
42 |
1ufv_A mol:protein length:276 Pantoate-beta-alanine ligase |
|
|
|
|
PfamA26U |
3-276 |
-119.000 |
39 |
PF02569.10; PANC_ECOLI/2-280; Pantoate-beta-alanine ligase |
|
|
|
|
SCOP175 |
1-276 |
-117.000 |
38 |
d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]} |
|
|
| 7 |
gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] |
634 |
COG0113 |
3-634 |
-10.200 |
9 |
[G] COG4409 Neuraminidase (sialidase) |
|
|
|
|
PDB0113 |
463-634 |
-10.600 |
15 |
2lhf_A mol:protein length:179 Outer membrane protein H1 |
|
|
|
|
PfamA26U |
465-634 |
-61.300 |
38 |
PF01856.12; O26005_HELPY/59-248; Helicobacter outer membrane protein |
|
|
|
|
SCOP175 |
453-634 |
-9.550 |
14 |
d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]} |
|
|
| 8 |
gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] |
546 |
COG0113 |
1-539 |
-156.000 |
61 |
[O] COG0459 Chaperonin GroEL (HSP60 family) |
|
|
|
|
PDB0113 |
1-546 |
-158.000 |
60 |
1grl_A mol:protein length:548 GROEL (HSP60 CLASS) |
|
|
|
|
PfamA26U |
22-519 |
-30.900 |
15 |
PF00118.19; A2FL92_TRIVA/36-522; TCP-1/cpn60 chaperonin family |
|
|
|
|
SCOP175 |
8-257 |
-19.700 |
19 |
d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} |
|
|
|
|
184-375 |
-86.400 |
63 |
d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} |
|
|
|
|
274-523 |
-68.300 |
32 |
d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} |
|
|
| 9 |
gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] |
118 |
COG0113 |
1-90 |
-50.300 |
40 |
[O] COG0234 Co-chaperonin GroES (HSP10) |
|
|
|
|
PDB0113 |
1-90 |
-53.400 |
47 |
1we3_O mol:protein length:100 cpn10(GroES) |
|
|
|
|
PfamA26U |
2-89 |
-51.300 |
43 |
PF00166.16; CH10_CORGL/5-97; Chaperonin 10 Kd subunit |
|
|
|
|
SCOP175 |
1-90 |
-52.600 |
47 |
d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]} |
|
|
| 10 |
gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] |
559 |
COG0113 |
1-558 |
-114.000 |
26 |
[L] COG0358 DNA primase (bacterial type) |
|
|
|
|
PDB0113 |
3-415 |
-98.200 |
31 |
2au3_A mol:protein length:407 DNA primase |
|
|
|
|
PfamA26U |
2-99 |
-57.900 |
46 |
PF01807.15; PRIM_PSEPU/5-102; CHC2 zinc finger |
|
|
|
|
117-239 |
-51.900 |
38 |
PF08275.6; Q64P92_BACFR/123-254; DNA primase catalytic core, N-terminal domain |
|
|
|
|
249-334 |
-48.100 |
44 |
PF13155.1; C5EJG0_9FIRM/258-343; Toprim-like |
|
|
|
|
352-409 |
-10.600 |
10 |
PF10410.4; Q5QVK4_IDILO/371-429; DnaB-helicase binding domain of primase |
|
|
|
|
SCOP175 |
1-100 |
-57.400 |
40 |
d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]} |
|
|
|
|
106-411 |
-81.100 |
28 |
d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]} |
|
|
| 11 |
gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] |
350 |
COG0113 |
2-341 |
-67.700 |
15 |
[J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|
|
|
|
PDB0113 |
2-341 |
-67.700 |
16 |
2hma_A mol:protein length:376 Probable tRNA (5-methylaminomethyl-2-thiourid |
|
|
|
|
PfamA26U |
4-341 |
-68.300 |
16 |
PF03054.11; MNMA_HAEIN/25-379; tRNA methyl transferase |
|
|
|
|
SCOP175 |
2-248 |
-38.800 |
14 |
d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} |
|
|
| 12 |
gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] |
275 |
COG0113 |
3-263 |
-12.400 |
12 |
[S] COG3802 Uncharacterized protein conserved in bacteria |
|
|
|
|
PDB0113 |
7-246 |
-13.500 |
15 |
3lzk_A mol:protein length:359 Fumarylacetoacetate hydrolase family protein |
|
|
|
|
PfamA26U |
7-239 |
-9.880 |
13 |
PF01557.13; Q1LF48_RALME/58-257; Fumarylacetoacetate (FAA) hydrolase family |
|
|
|
|
SCOP175 |
7-239 |
-10.700 |
15 |
d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} |
|
|
| 13 |
gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] |
93 |
COG0113 |
25-91 |
-9.290 |
18 |
[U] COG3838 Type IV secretory pathway, VirB2 components (pilins) |
|
|
|
|
PDB0113 |
35-92 |
-5.250 |
17 |
3rpj_A mol:protein length:134 Curlin genes transcriptional regulator |
|
|
|
|
PfamA26U |
4-93 |
-7.910 |
6 |
PF04147.7; A4QVL9_MAGO7/41-869; Nop14-like family |
|
|
|
|
SCOP175 |
46-92 |
-4.980 |
15 |
d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]} |
|
|
| 14 |
gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] |
87 |
COG0113 |
11-86 |
-15.900 |
7 |
[U] COG3702 Type IV secretory pathway, VirB3 components |
|
|
|
|
PDB0113 |
65-87 |
-6.770 |
26 |
1ejp_A mol:protein length:28 SYNDECAN-4 |
|
|
|
|
PfamA26U |
3-80 |
-11.300 |
11 |
PF05101.8; A5I9X1_LEGPC/1-87; Type IV secretory pathway, VirB3-like protein |
|
|
|
|
SCOP175 |
14-80 |
-6.860 |
20 |
d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} |
|
|
| 15 |
gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] |
787 |
COG0113 |
257-786 |
-75.200 |
16 |
[U] COG3451 Type IV secretory pathway, VirB4 components |
|
|
|
|
PDB0113 |
410-764 |
-44.200 |
13 |
4ag5_A mol:protein length:392 TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LI |
|
|
|
|
PfamA26U |
175-375 |
-43.800 |
15 |
PF03135.9; Q9ZE45_RICPR/194-399; CagE, TrbE, VirB family, component of type IV transporter system |
|
|
|
|
406-733 |
-20.700 |
12 |
PF05872.7; Q8YFZ2_BRUME/11-503; Bacterial protein of unknown function (DUF853 topsan) |
|
|
|
|
439-772 |
-15.100 |
16 |
PF02534.9; Q9ZDN4_RICPR/120-569; Type IV secretory system Conjugative DNA transfer |
|
|
|
|
441-717 |
-33.500 |
16 |
PF12846.2; A4JVD5_BURVG/498-898; AAA-like domain |
|
|
|
|
SCOP175 |
439-787 |
-19.600 |
15 |
d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} |
|
|
| 16 |
gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] |
469 |
COG0113 |
1-469 |
-146.000 |
98 |
[S] COG3014 Uncharacterized protein conserved in bacteria |
|
|
|
|
PDB0113 |
21-246 |
-30.300 |
9 |
3u4t_A mol:protein length:272 TPR repeat-containing protein |
|
|
|
|
23-335 |
-22.600 |
10 |
1w3b_A mol:protein length:388 UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUC |
|
|
|
|
35-405 |
-21.100 |
10 |
4abn_A mol:protein length:474 TETRATRICOPEPTIDE REPEAT PROTEIN 5 |
|
|
|
|
PfamA26U |
20-160 |
-26.900 |
11 |
PF12968.2; Q8KAL8_CHLTE/2-145; Domain of Unknown Function (DUF3856 topsan) |
|
|
|
|
20-240 |
-24.500 |
10 |
PF13429.1; Q39U81_GEOMG/198-480; Tetratricopeptide repeat |
|
|
|
|
21-469 |
-24.200 |
12 |
PF12569.3; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1 |
|
|
|
|
SCOP175 |
23-335 |
-22.600 |
10 |
d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} |
|
|
|
|
24-258 |
-31.000 |
10 |
d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} |
|
|
|
|
28-391 |
-16.600 |
9 |
d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} |
|
|
| 17 |
gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] |
321 |
COG0113 |
1-198 |
-46.000 |
23 |
[NT] COG0835 Chemotaxis signal transduction protein |
|
|
|
|
183-321 |
-32.000 |
13 |
[TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain |
|
|
|
|
PDB0113 |
195-318 |
-43.300 |
22 |
4HNR Entity 1(prereleased) |
|
|
|
|
PfamA26U |
25-173 |
-24.300 |
11 |
PF01584.14; Q8XQ78_RALSO/559-691; CheW-like domain |
|
|
|
|
199-315 |
-36.200 |
22 |
PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain |
|
|
|
|
SCOP175 |
18-176 |
-33.900 |
18 |
d2ch4w1 b.40.7.1 (W:9-147) Chemotaxis protein CheW {Thermotoga maritima [TaxId: 2336]} |
|
|
|
|
196-320 |
-41.400 |
24 |
d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} |
|
|
| 18 |
gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] |
405 |
COG0113 |
1-405 |
-76.100 |
13 |
[E] COG0019 Diaminopimelate decarboxylase |
|
|
|
|
PDB0113 |
1-405 |
-110.000 |
48 |
3n29_A mol:protein length:418 Carboxynorspermidine decarboxylase |
|
|
|
|
PfamA26U |
15-264 |
-35.300 |
13 |
PF02784.11; DCOR2_DROME/37-273; Pyridoxal-dependent decarboxylase, pyridoxal binding domain |
|
|
|
|
267-385 |
-33.600 |
19 |
PF00278.17; Q5LXE4_SILPO/280-393; Pyridoxal-dependent decarboxylase, C-terminal sheet domain |
|
|
|
|
SCOP175 |
15-265 |
-47.100 |
16 |
d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} |
|
|
|
|
250-405 |
-54.300 |
18 |
d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} |
|
|
| 19 |
gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] |
190 |
COG0113 |
9-190 |
-54.400 |
14 |
[S] KOG4268 Uncharacterized conserved protein containing PAP2 domain |
|
|
|
|
PDB0113 |
26-186 |
-42.600 |
14 |
1d2t_A mol:protein length:231 ACID PHOSPHATASE |
|
|
|
|
PfamA26U |
69-189 |
-44.200 |
15 |
PF01569.16; A7N7S4_VIBHB/78-234; PAP2 superfamily |
|
|
|
|
SCOP175 |
26-186 |
-44.100 |
13 |
d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]} |
|
|
| 20 |
gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] |
521 |
COG0113 |
1-521 |
-93.500 |
25 |
[R] COG2194 Predicted membrane-associated, metal-dependent hydrolase |
|
|
|
|
PDB0113 |
190-521 |
-32.000 |
11 |
3lxq_A mol:protein length:450 Uncharacterized protein VP1736 |
|
|
|
|
PfamA26U |
5-226 |
-10.200 |
9 |
PF11893.3; A4SP91_AERS4/1-253; Domain of unknown function (DUF3413 topsan) |
|
|
|
|
56-207 |
-23.500 |
21 |
PF08019.7; A8FYE5_SHESH/59-214; Domain of unknown function (DUF1705 topsan) |
|
|
|
|
192-517 |
-28.700 |
13 |
PF02995.12; Q9VIP6_DROME/62-563; Protein of unknown function (DUF229 topsan) |
|
|
|
|
SCOP175 |
218-517 |
-24.700 |
13 |
d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens) [TaxId: 9606]} |
|
