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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 COG0614 1-135 -69.700 27  [K] COG0781 Transcription termination factor
H.sapiens 4-137 -11.800 sp|Q8NE18|NSUN7_HUMAN Putative methyltransferase NSUN7 OS=Homo sapiens GN=NSUN7 PE=2 SV=4 (Range: 1-300)
33-134 -18.600 11  sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2 (Range: 151-450)
HGM_OVER 5-137 -6.700 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
NEW_HUMAN_DOMAINS 76-134 -7.110 11  sp|A4D997|CI102_HUMAN Uncharacterized protein C9orf102 OS=Homo sapiens GN=C9orf102 PE=1 SV=3 (Range: 175-256)
PDB0614 1-138 -70.300 31  3r2d_A mol:protein length:149 N utilization substance protein B
PfamA27U 5-130 -66.600 24  PF01029.13; A1HQ67_9FIRM/4-132; NusB family
SCOP175 2-138 -70.300 28  d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
VFDB 2-138 -6.410 VFG2125 (gi:15604808) lcrE - Low Calcium Response E [Chlamydia trachomatis D/UW-3/CX] (VF0344)
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 COG0614 1-156 -95.100 48  [H] COG0054 Riboflavin synthase beta-chain
H.sapiens 8-136 -7.900 12  sp|Q9Y4L1|HYOU1_HUMAN(removed signalp:1-32) Hypoxia up-regulated protein 1 OS=Homo sapiens GN=HYOU1 PE=1 SV=1 (Range: 301-600)
HGM_OVER 51-128 -4.630 14  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 72-124 -5.290 11  sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1 (Range: 1788-1877)
PDB0614 1-155 -103.000 48  1rvv_A mol:protein length:154 RIBOFLAVIN SYNTHASE
PfamA27U 13-154 -95.500 38  PF00885.14; Q5FS93_GLUOX/14-155; 6,7-dimethyl-8-ribityllumazine synthase
SCOP175 1-155 -103.000 50  d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
VFDB 8-149 -5.570 14  VFG2197 (gi:29375537) EF0954 - sugar-binding transcriptional regulator, LacI family [Enterococcus faecalis V583] (VF0362)
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 COG0614 2-276 -117.000 42  [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase
H.sapiens 5-276 -7.930 14  sp|Q9NR45|SIAS_HUMAN Sialic acid synthase OS=Homo sapiens GN=NANS PE=1 SV=2
HGM_OVER 27-271 -5.440 PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
NEW_HUMAN_DOMAINS 179-256 -6.560 23  sp|Q2KHT4|GSG1_HUMAN Germ cell-specific gene 1 protein OS=Homo sapiens GN=GSG1 PE=2 SV=2 (Range: 252-324)
PDB0614 9-276 -123.000 51  1fwn_A mol:protein length:267 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
PfamA27U 2-243 -11.500 16  PF00793.15; AROG_HAEIN/32-347; DAHP synthetase I family
SCOP175 9-276 -123.000 51  d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
VFDB 2-271 -11.200 17  VFG1630 (gi:14594865) orf7 - hypothetical protein [Escherichia coli 536]
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 COG0614 2-219 -91.800 23  [P] KOG1578 Predicted carbonic anhydrase involved in protection against oxidative damage
H.sapiens 25-102 -9.040 18  sp|P01215|GLHA_HUMAN(removed signalp:1-24) Glycoprotein hormones alpha chain OS=Homo sapiens GN=CGA PE=1 SV=1
HGM_OVER 42-98 -4.450 15  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
NEW_HUMAN_DOMAINS 17-87 -6.860 13  sp|A6NKB5|PCX2_HUMAN Pecanex-like protein 2 OS=Homo sapiens GN=PCNXL2 PE=1 SV=3 (Range: 315-399)
PDB0614 2-209 -97.800 28  1ekj_A mol:protein length:221 BETA-CARBONIC ANHYDRASE
PfamA27U 33-195 -85.500 26  PF00484.14; Q28W87_JANSC/42-203; Carbonic anhydrase
SCOP175 2-209 -97.400 28  d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]}
VFDB 2-200 -63.800 20  VFG2301 (gi:17233497) mig-5 - putative carbonic anhydrase [Salmonella enterica (serovar typhimurium) LT2] (VF0396)
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 COG0614 2-227 -110.000 33  [F] COG0284 Orotidine-5`-phosphate decarboxylase
H.sapiens 2-226 -27.000 18  sp|P11172|PYR5_HUMAN Uridine 5`-monophosphate synthase OS=Homo sapiens GN=UMPS PE=1 SV=1
HGM_OVER 5-175 -3.390 11  HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;
NEW_HUMAN_DOMAINS 22-123 -4.620 10  sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3 (Range: 1-120)
PDB0614 2-227 -111.000 35  1dbt_A mol:protein length:239 OROTIDINE 5`-PHOSPHATE DECARBOXYLASE
PfamA27U 2-223 -111.000 34  PF00215.19; PYRF_STRP1/5-224; Orotidine 5`-phosphate decarboxylase / HUMPS family
SCOP175 2-227 -110.000 35  d1dbta_ c.1.2.3 (A:) Orotidine 5`-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}
VFDB 43-226 -6.920 VFG1114 (gi:15641784) nanE - conserved hypothetical protein [Vibrio cholerae N16961]
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 COG0614 1-276 -118.000 40  [H] COG0414 Panthothenate synthetase
H.sapiens 119-226 -8.330 17  sp|Q93079|H2B1H_HUMAN Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3
HGM_OVER 39-163 -4.460 13  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
NEW_HUMAN_DOMAINS 22-80 -5.550 15  sp|Q7Z7H8|RM10_HUMAN 39S ribosomal protein L10, mitochondrial OS=Homo sapiens GN=MRPL10 PE=1 SV=3 (Range: 1-83)
PDB0614 1-276 -126.000 42  2ejc_A mol:protein length:280 Pantoate--beta-alanine ligase
PfamA27U 3-276 -115.000 40  PF02569.10; PANC_ECOLI/2-280; Pantoate-beta-alanine ligase
SCOP175 1-276 -112.000 39  d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 1-276 -110.000 39  VFG1417 (gi:15610738) panC - panC [Mycobacterium tuberculosis H37Rv] (VF0319)
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 COG0614 2-310 -10.800 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
H.sapiens 464-629 -9.610 16  sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=2 (Range: 151-450)
HGM_OVER 426-628 -5.430 10  PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;
NEW_HUMAN_DOMAINS 1-71 -4.400 tr|E7EMH6|E7EMH6_HUMAN Uncharacterized protein OS=Homo sapiens GN=LAMB2 PE=4 SV=1 (Range: 302-380)
PDB0614 1-460 -34.200 24  4o5j_A mol:protein length:461 Uncharacterized protein
463-634 -11.500 15  2lhf_A mol:protein length:179 Outer membrane protein H1
PfamA27U 465-634 -64.700 38  PF01856.12; O26005_HELPY/59-248; Helicobacter outer membrane protein
SCOP175 453-634 -8.260 15  d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
VFDB 1-634 -135.000 100  VFG1142 (gi:15646197) hopZ - outer membrane protein [Helicobacter pylori 26695] (VF0054)
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 COG0614 1-546 -159.000 60  [O] COG0459 Chaperonin GroEL (HSP60 family)
H.sapiens 1-546 -150.000 53  sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2
HGM_OVER 234-408 -5.170 PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
NEW_HUMAN_DOMAINS 58-128 -4.890 17  sp|P42356|PI4KA_HUMAN Phosphatidylinositol 4-kinase alpha OS=Homo sapiens GN=PI4KA PE=1 SV=3 (Range: 963-1052)
PDB0614 2-546 -162.000 60  1grl_A mol:protein length:548 GROEL (HSP60 CLASS)
PfamA27U 22-519 -30.000 15  PF00118.19; A2FL92_TRIVA/36-522; TCP-1/cpn60 chaperonin family
SCOP175 8-199 -20.200 22  d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
184-375 -87.700 63  d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}
274-523 -63.800 32  d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}
VFDB 1-546 -163.000 62  VFG1855 (gi:52840925) htpB - Hsp60, 60K heat shock protein HtpB [Legionella pneumophila Philadelphia 1] (VF0159)
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 COG0614 1-90 -49.900 38  [O] COG0234 Co-chaperonin GroES (HSP10)
H.sapiens 1-91 -49.800 37  sp|P61604|CH10_HUMAN 10 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPE1 PE=1 SV=2
HGM_OVER 10-90 -4.550 14  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
NEW_HUMAN_DOMAINS 6-93 -8.380 18  sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3 (Range: 116-311)
PDB0614 1-90 -53.300 47  1we3_O mol:protein length:100 cpn10(GroES)
PfamA27U 2-89 -51.600 43  PF00166.16; CH10_CORGL/5-97; Chaperonin 10 Kd subunit
SCOP175 1-90 -52.500 47  d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}
VFDB 1-72 -5.980 22  VFG0967 (gi:15675354) hylP3 - hyaluronidase - phage associated [Streptococcus pyogenes SF370] (VF0246)
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 COG0614 1-558 -121.000 26  [L] COG0358 DNA primase (bacterial type)
H.sapiens 1-305 -34.100 14  sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 1-300)
123-413 -15.800 12  sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 151-450)
HGM_OVER 18-99 -2.670 14  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 21-91 -6.590 22  sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 (Range: 322-408)
PDB0614 2-415 -102.000 31  2au3_A mol:protein length:407 DNA primase
423-559 -14.100 100  4ehs_A mol:protein length:155 DNA primase
PfamA27U 2-99 -58.900 46  PF01807.15; PRIM_PSEPU/5-102; CHC2 zinc finger
117-239 -42.500 38  PF08275.6; Q64P92_BACFR/123-254; DNA primase catalytic core, N-terminal domain
249-334 -42.700 44  PF13155.1; C5EJG0_9FIRM/258-343; Toprim-like
438-559 -14.200 98  PF16730; I9XGX3.1/438-559; DnaG-primase C-terminal, helicase-binding domain
SCOP175 2-100 -56.100 40  d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
106-411 -78.900 29  d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}
444-555 -11.300 11  d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 7-555 -4.780 11  VFG0415 (gi:16082760) yopO/ypkA - putative targeted effector protein kinase [Yersinia pestis CO92] (VF0140)
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 COG0614 2-341 -63.300 16  [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
H.sapiens 2-340 -54.700 13  sp|O75648|MTU1_HUMAN Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Homo sapiens GN=TRMU PE=1 SV=2
HGM_OVER 1-245 -3.080 11  PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;
NEW_HUMAN_DOMAINS 1-77 -5.300 18  sp|Q8NAT1|AGO61_HUMAN Uncharacterized glycosyltransferase AGO61 OS=Homo sapiens GN=AGO61 PE=2 SV=1 (Range: 312-405)
PDB0614 2-341 -64.400 15  2hma_A mol:protein length:376 Probable tRNA (5-methylaminomethyl-2-thiourid
PfamA27U 4-341 -64.400 16  PF03054.11; MNMA_HAEIN/25-379; tRNA methyl transferase
SCOP175 5-247 -18.600 16  d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
VFDB 5-342 -5.930 13  VFG2160 (gi:16803869) fbpA - fibronectin-binding protein [Listeria monocytogenes (serovar 1/2a) EGD-e] (VF0349)
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 COG0614 2-260 -10.600 12  [S] COG3802 Uncharacterized protein conserved in bacteria
H.sapiens 7-239 -11.400 14  sp|Q6P587|FAHD1_HUMAN Fumarylacetoacetate hydrolase domain-containing protein 1 OS=Homo sapiens GN=FAHD1 PE=1 SV=2
HGM_OVER 126-212 -3.130 19  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
NEW_HUMAN_DOMAINS 40-133 -6.000 14  sp|A4D1E1|Z804B_HUMAN Zinc finger protein 804B OS=Homo sapiens GN=ZNF804B PE=1 SV=2 (Range: 1240-1349)
PDB0614 7-239 -11.400 15  1saw_A mol:protein length:225 hypothetical protein FLJ36880
PfamA27U 7-239 -11.100 13  PF01557.13; Q1LF48_RALME/58-257; Fumarylacetoacetate (FAA) hydrolase family
SCOP175 7-239 -11.100 14  d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}
VFDB 37-268 -4.400 VFG1819 (gi:15609515) mbtG - mbtG [Mycobacterium tuberculosis H37Rv] (VF0299)
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 COG0614 25-91 -9.180 18  [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
H.sapiens 3-93 -8.280 15  sp|Q15878|CAC1E_HUMAN Voltage-dependent R-type calcium channel subunit alpha-1E OS=Homo sapiens GN=CACNA1E PE=1 SV=3 (Range: 601-900)
HGM_OVER 22-88 -4.160 11  HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;
NEW_HUMAN_DOMAINS 38-79 -6.510 23  sp|Q5SV97|CA170_HUMAN Uncharacterized protein C1orf170 OS=Homo sapiens GN=C1orf170 PE=2 SV=3 (Range: 613-696)
PDB0614 17-93 -5.630 11  1w91_A mol:protein length:503 BETA-XYLOSIDASE
PfamA27U 1-93 -9.560 12  PF16943; K0D9D5.1/1-114; Cag pathogenicity island, type IV secretory system
SCOP175 17-93 -5.150 13  d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]}
VFDB 21-91 -14.500 11  VFG2231 (gi:49476010) virB2 - virB2 protein homolog [Bartonella henselae Houston-1] (VF0369)
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 COG0614 11-86 -15.800 [U] COG3702 Type IV secretory pathway, VirB3 components
H.sapiens 7-78 -9.830 15  sp|Q8NC44|F134A_HUMAN Protein FAM134A OS=Homo sapiens GN=FAM134A PE=1 SV=3
HGM_OVER 3-87 -5.280 15  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 58-72 -6.540 46  tr|B4DED9|B4DED9_HUMAN Uncharacterized protein OS=Homo sapiens GN=MAPK8IP2 PE=2 SV=1 (Range: 1-64)
PDB0614 6-76 -6.280 1rh1_A mol:protein length:511 Colicin B
PfamA27U 3-80 -11.700 11  PF05101.8; A5I9X1_LEGPC/1-87; Type IV secretory pathway, VirB3-like protein
SCOP175 14-77 -7.650 21  d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 7-79 -16.300 12  VFG2232 (gi:49476011) virB3 - virB3 protein homolog [Bartonella henselae Houston-1] (VF0369)
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 COG0614 257-775 -49.900 15  [U] COG3451 Type IV secretory pathway, VirB4 components
H.sapiens 440-715 -9.830 13  sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 (Range: 1-300)
HGM_OVER 11-201 -6.710 10  HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
NEW_HUMAN_DOMAINS 444-527 -4.900 sp|Q92604|LGAT1_HUMAN Acyl-CoA:lysophosphatidylglycerol acyltransferase 1 OS=Homo sapiens GN=LPGAT1 PE=2 SV=1 (Range: 225-338)
PDB0614 434-762 -25.800 14  4ag5_A mol:protein length:392 TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LI
PfamA27U 23-256 -9.580 10  PF11130.3; B7WTT6_COMTE/34-311; F pilus assembly Type-IV secretion system for plasmid transfer
175-375 -50.000 14  PF03135.9; Q9ZE45_RICPR/194-399; CagE, TrbE, VirB family, component of type IV transporter system
407-624 -12.100 13  PF01935.12; A3DEJ1_CLOTH/136-414; Domain of unknown function DUF87 topsan
441-717 -20.400 16  PF12846.2; A4JVD5_BURVG/498-898; AAA-like domain
441-759 -17.000 13  PF10412.4; A1WDH0_ACISJ/170-553; Type IV secretion-system coupling protein DNA-binding domain
SCOP175 441-787 -17.100 15  d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
VFDB 18-787 -143.000 18  VFG2233 (gi:49476012) virB4 - virB4 protein homolog [Bartonella henselae Houston-1] (VF0369)
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 COG0614 1-469 -140.000 98  [S] COG3014 Uncharacterized protein conserved in bacteria
H.sapiens 25-242 -22.600 sp|Q9H9A5|CNOTA_HUMAN CCR4-NOT transcription complex subunit 10 OS=Homo sapiens GN=CNOT10 PE=1 SV=1 (Range: 151-450)
26-273 -21.600 sp|Q8NEE8|TTC16_HUMAN Tetratricopeptide repeat protein 16 OS=Homo sapiens GN=TTC16 PE=2 SV=2 (Range: 301-600)
28-359 -21.000 sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3 (Range: 451-750)
HGM_OVER 1-147 -5.680 11  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
NEW_HUMAN_DOMAINS 34-152 -12.900 sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB0614 21-244 -26.200 3u4t_A mol:protein length:272 TPR repeat-containing protein
26-354 -18.100 2y4t_A mol:protein length:450 DNAJ HOMOLOG SUBFAMILY C MEMBER 3
PfamA27U 20-160 -20.000 11  PF12968.2; Q8KAL8_CHLTE/2-145; Domain of Unknown Function (DUF3856 topsan)
20-240 -18.000 PF13429.1; Q39U81_GEOMG/198-480; Tetratricopeptide repeat
28-469 -16.300 10  PF12569.3; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
SCOP175 24-258 -24.700 10  d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}
28-391 -12.500 d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
VFDB 1-242 -22.400 VFG1217 (gi:15599000) pilF - type 4 fimbrial biogenesis protein PilF [Pseudomonas aeruginosa PAO1] (VF0082)
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 COG0614 1-188 -62.700 25  [NT] COG0835 Chemotaxis signal transduction protein
196-321 -24.200 20  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
H.sapiens 197-321 -22.800 12  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
HGM_OVER 195-287 -3.400 18  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
NEW_HUMAN_DOMAINS 198-321 -17.500 sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB0614 9-175 -41.000 19  4jpb_W mol:protein length:151 Chemotaxis protein CheW
196-321 -36.400 24  1m5t_A mol:protein length:124 cell division response regulator DivK
PfamA27U 25-173 -12.400 11  PF01584.14; Q8XQ78_RALSO/559-691; CheW-like domain
199-315 -22.300 21  PF00072.19; AGMR_PSEAE/4-117; Response regulator receiver domain
SCOP175 18-175 -39.600 19  d2ch4w1 b.40.7.1 (W:9-147) Chemotaxis protein CheW {Thermotoga maritima [TaxId: 2336]}
196-321 -36.200 24  d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
VFDB 12-174 -28.600 11  VFG1227 (gi:15595607) pilI - twitching motility protein PilI [Pseudomonas aeruginosa PAO1] (VF0082)
191-320 -32.700 22  VFG1225 (gi:15595605) pilG - twitching motility protein PilG [Pseudomonas aeruginosa PAO1] (VF0082)
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 COG0614 5-395 -21.800 15  [E] KOG0622 Ornithine decarboxylase
H.sapiens 5-389 -22.500 14  sp|O14977|AZIN1_HUMAN Antizyme inhibitor 1 OS=Homo sapiens GN=AZIN1 PE=1 SV=2
HGM_OVER 60-289 -3.490 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
NEW_HUMAN_DOMAINS 175-304 -5.160 11  sp|O95866|G6B_HUMAN Protein G6b OS=Homo sapiens GN=G6B PE=1 SV=1 (Range: 18-142)
PDB0614 2-405 -126.000 48  3n29_A mol:protein length:418 Carboxynorspermidine decarboxylase
PfamA27U 268-385 -13.600 19  PF00278.17; Q5LXE4_SILPO/280-393; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
SCOP175 15-266 -22.000 14  d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]}
215-395 -19.800 17  d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 16-299 -4.540 11  VFG1961 (gi:15792751) Cj1433c - hypothetical protein Cj1433c [Campylobacter jejuni NCTC 11168] (VF0323)
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 COG0614 30-190 -36.000 16  [S] KOG4268 Uncharacterized conserved protein containing PAP2 domain
H.sapiens 2-188 -34.900 15  sp|Q8IY26|PPAC2_HUMAN Presqualene diphosphate phosphatase OS=Homo sapiens GN=PPAPDC2 PE=1 SV=3
HGM_OVER 128-179 -2.690 15  PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
NEW_HUMAN_DOMAINS 111-170 -6.820 tr|E7ENG5|E7ENG5_HUMAN Uncharacterized protein OS=Homo sapiens GN=G6PC PE=4 SV=1 (Range: 83-178)
PDB0614 9-189 -27.400 15  4px7_A mol:protein length:262 Phosphatidylglycerophosphatase
PfamA27U 83-189 -28.400 16  PF01569.16; A7N7S4_VIBHB/78-234; PAP2 superfamily
SCOP175 55-181 -23.900 18  d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]}
VFDB 101-165 -7.210 11  VFG0960 (gi:15675290) grab - protein GRAB (protein G-related alpha 2M-binding protein) [Streptococcus pyogenes SF370] (VF0254)
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 COG0614 2-521 -119.000 25  [R] COG2194 Predicted membrane-associated, metal-dependent hydrolase
H.sapiens 216-521 -17.600 14  sp|Q6UWY0|ARSK_HUMAN(removed signalp:1-22) Arylsulfatase K OS=Homo sapiens GN=ARSK PE=2 SV=1
HGM_OVER 216-467 -4.070 PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 378-495 -5.670 14  sp|Q96JN8|NEUL4_HUMAN Neuralized-like protein 4 OS=Homo sapiens GN=NEURL4 PE=1 SV=2 (Range: 1316-1440)
PDB0614 216-521 -93.000 32  4kav_A mol:protein length:335 YhbX/YhjW/YijP/YjdB family protein
PfamA27U 56-207 -38.100 20  PF08019.7; A8FYE5_SHESH/59-214; Domain of unknown function (DUF1705 topsan)
206-511 -15.000 11  PF02995.12; Q9VIP6_DROME/62-563; Protein of unknown function (DUF229 topsan)
SCOP175 220-514 -11.800 12  d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606]}
VFDB 4-518 -57.900 17  VFG1440 (gi:4741821) ibeC - membrane protein YijP [Escherichia coli] (VF0237)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.