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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 COG1214 2-135 -69.800 27  [K] COG0781 Transcription termination factor
H.sapiens 24-134 -21.800 11  sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2 (Range: 151-450)
HGM_OVER 5-137 -6.240 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
JCSG1214 1-131 -30.200 18  SP1512A YP_194179.1 411796 Purified-2010-09-29
NEW_HUMAN_DOMAINS 62-121 -6.130 12  tr|F8W8V9|F8W8V9_HUMAN Uncharacterized protein OS=Homo sapiens GN=KIF1A PE=3 SV=1 (Range: 689-813)
PDB1214 1-136 -70.100 32  3r2d_A mol:protein length:149 N utilization substance protein B
PfamA27U 5-130 -66.700 24  PF01029.13; A1HQ67_9FIRM/4-132; NusB family
SCOP175 2-136 -70.400 28  d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
VFDB 3-138 -6.000 VFG2125 (gi:15604808) lcrE - Low Calcium Response E [Chlamydia trachomatis D/UW-3/CX] (VF0344)
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 COG1214 1-156 -95.100 48  [H] COG0054 Riboflavin synthase beta-chain
H.sapiens 8-136 -7.930 12  sp|Q9Y4L1|HYOU1_HUMAN(removed signalp:1-32) Hypoxia up-regulated protein 1 OS=Homo sapiens GN=HYOU1 PE=1 SV=1 (Range: 301-600)
HGM_OVER 77-145 -4.160 14  PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]
JCSG1214 1-156 -98.500 41  TM1825 TM1825 283678 Purified-2001-12-11
NEW_HUMAN_DOMAINS 58-118 -5.330 18  sp|Q0P5Q8|FAM7A_HUMAN Protein FAM7A OS=Homo sapiens GN=FAM7A1 PE=1 SV=3 (Range: 1-69)
PDB1214 1-155 -101.000 50  1hqk_A mol:protein length:154 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE
PfamA27U 11-154 -93.200 38  PF00885.14; Q5FS93_GLUOX/14-155; 6,7-dimethyl-8-ribityllumazine synthase
SCOP175 1-155 -101.000 50  d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
VFDB 8-149 -5.610 14  VFG2197 (gi:29375537) EF0954 - sugar-binding transcriptional regulator, LacI family [Enterococcus faecalis V583] (VF0362)
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 COG1214 2-276 -118.000 42  [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase
H.sapiens 4-276 -8.720 14  sp|Q9NR45|SIAS_HUMAN Sialic acid synthase OS=Homo sapiens GN=NANS PE=1 SV=2
HGM_OVER 31-149 -4.110 14  PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
JCSG1214 7-276 -42.300 30  TM0343 TM0343 282218 PDB-2005-02-14
NEW_HUMAN_DOMAINS 179-258 -5.930 24  sp|Q2KHT4|GSG1_HUMAN Germ cell-specific gene 1 protein OS=Homo sapiens GN=GSG1 PE=2 SV=2 (Range: 252-324)
PDB1214 2-276 -123.000 43  3t4c_A mol:protein length:288 2-dehydro-3-deoxyphosphooctonate aldolase 1
PfamA27U 2-243 -11.500 17  PF00793.15; AROG_HAEIN/32-347; DAHP synthetase I family
SCOP175 9-276 -123.000 51  d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
VFDB 2-271 -11.400 17  VFG1630 (gi:14594865) orf7 - hypothetical protein [Escherichia coli 536]
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 COG1214 2-219 -94.300 23  [P] KOG1578 Predicted carbonic anhydrase involved in protection against oxidative damage
H.sapiens 25-102 -8.200 18  sp|P01215|GLHA_HUMAN(removed signalp:1-24) Glycoprotein hormones alpha chain OS=Homo sapiens GN=CGA PE=1 SV=1
HGM_OVER 15-164 -2.810 10  PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
JCSG1214 17-109 -8.550 15  YDR428C YDR428C 354901 PDB-2004-05-20
NEW_HUMAN_DOMAINS 24-103 -7.770 17  sp|A6H8M9|CDHR4_HUMAN Cadherin-related family member 4 OS=Homo sapiens GN=CDHR4 PE=2 SV=1 (Range: 17-129)
PDB1214 2-209 -98.300 28  1ekj_A mol:protein length:221 BETA-CARBONIC ANHYDRASE
PfamA27U 33-195 -84.600 26  PF00484.14; Q28W87_JANSC/42-203; Carbonic anhydrase
SCOP175 2-209 -98.000 28  d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]}
VFDB 2-199 -50.200 19  VFG2301 (gi:17233497) mig-5 - putative carbonic anhydrase [Salmonella enterica (serovar typhimurium) LT2] (VF0396)
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 COG1214 2-227 -107.000 33  [F] COG0284 Orotidine-5`-phosphate decarboxylase
H.sapiens 2-226 -28.000 18  sp|P11172|PYR5_HUMAN Uridine 5`-monophosphate synthase OS=Homo sapiens GN=UMPS PE=1 SV=1
HGM_OVER 5-175 -3.400 11  HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;
JCSG1214 1-227 -81.400 29  TM0332 TM0332 282207 PDB-2005-01-04
NEW_HUMAN_DOMAINS 4-155 -4.830 15  sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=3 (Range: 111-312)
PDB1214 2-227 -107.000 35  1dbt_A mol:protein length:239 OROTIDINE 5`-PHOSPHATE DECARBOXYLASE
PfamA27U 2-223 -108.000 34  PF00215.19; PYRF_STRP1/5-224; Orotidine 5`-phosphate decarboxylase / HUMPS family
SCOP175 2-227 -108.000 35  d1dbta_ c.1.2.3 (A:) Orotidine 5`-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}
VFDB 43-226 -8.090 VFG1114 (gi:15641784) nanE - conserved hypothetical protein [Vibrio cholerae N16961]
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 COG1214 1-276 -120.000 39  [H] COG0414 Panthothenate synthetase
H.sapiens 119-226 -8.620 15  sp|Q7Z2G1|H2BWT_HUMAN(removed signalp:1-28) Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2
HGM_OVER 73-163 -3.750 18  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG1214 1-276 -121.000 42  TM1077 TM1077 282944 Purified-2001-12-12
NEW_HUMAN_DOMAINS 55-192 -6.140 13  tr|Q5T5D6|Q5T5D6_HUMAN Chromosome 1 open reading frame 88 OS=Homo sapiens GN=C1orf88 PE=2 SV=1 (Range: 1-158)
PDB1214 1-276 -121.000 41  1ufv_A mol:protein length:276 Pantoate-beta-alanine ligase
PfamA27U 3-276 -119.000 39  PF02569.10; PANC_ECOLI/2-280; Pantoate-beta-alanine ligase
SCOP175 1-276 -114.000 38  d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 1-276 -111.000 39  VFG1417 (gi:15610738) panC - panC [Mycobacterium tuberculosis H37Rv] (VF0319)
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 COG1214 465-634 -10.600 10  [M] COG3637 Opacity protein and related surface antigens
H.sapiens 1-284 -8.490 sp|Q9Y4G6|TLN2_HUMAN Talin-2 OS=Homo sapiens GN=TLN2 PE=1 SV=4 (Range: 1351-1650)
HGM_OVER 459-576 -4.790 12  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
JCSG1214 2-634 -15.700 SP17586C NP_439153.1 411588 Selected-2009-11-12
283-634 -70.800 23  RH20376A NP_208292.1 416152 Selected-2009-12-04
NEW_HUMAN_DOMAINS 1-71 -6.110 tr|E7EMH6|E7EMH6_HUMAN Uncharacterized protein OS=Homo sapiens GN=LAMB2 PE=4 SV=1 (Range: 302-380)
PDB1214 1-460 -43.300 24  4o5j_A mol:protein length:461 Uncharacterized protein
453-634 -13.600 13  2lhf_A mol:protein length:179 Outer membrane protein H1
PfamA27U 465-634 -65.300 38  PF01856.12; O26005_HELPY/59-248; Helicobacter outer membrane protein
SCOP175 453-634 -9.800 14  d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
VFDB 1-634 -146.000 100  VFG1142 (gi:15646197) hopZ - outer membrane protein [Helicobacter pylori 26695] (VF0054)
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 COG1214 1-539 -158.000 61  [O] COG0459 Chaperonin GroEL (HSP60 family)
H.sapiens 1-546 -150.000 53  sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2
HGM_OVER 229-408 -4.580 12  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
JCSG1214 1-534 -155.000 59  TM0506 TM0506 282379 Purified-2001-12-06
NEW_HUMAN_DOMAINS 39-128 -4.430 14  sp|P42356|PI4KA_HUMAN Phosphatidylinositol 4-kinase alpha OS=Homo sapiens GN=PI4KA PE=1 SV=3 (Range: 963-1052)
PDB1214 2-546 -161.000 60  1grl_A mol:protein length:548 GROEL (HSP60 CLASS)
PfamA27U 22-519 -29.700 15  PF00118.19; A2FL92_TRIVA/36-522; TCP-1/cpn60 chaperonin family
SCOP175 2-231 -71.300 44  d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}
184-375 -87.500 63  d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}
311-408 -42.200 46  d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]}
VFDB 1-546 -162.000 62  VFG1855 (gi:52840925) htpB - Hsp60, 60K heat shock protein HtpB [Legionella pneumophila Philadelphia 1] (VF0159)
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 COG1214 1-90 -50.300 40  [O] COG0234 Co-chaperonin GroES (HSP10)
H.sapiens 1-91 -50.300 37  sp|P61604|CH10_HUMAN 10 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPE1 PE=1 SV=2
HGM_OVER 10-90 -4.660 14  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
JCSG1214 1-91 -56.100 40  TM0505 TM0505 282378 Crystal|NMR-2002-07-01
NEW_HUMAN_DOMAINS 6-93 -7.730 18  sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3 (Range: 116-311)
PDB1214 1-90 -53.800 47  4v4o_O mol:protein length:100 cpn10(GroES)
PfamA27U 2-89 -51.700 43  PF00166.16; CH10_CORGL/5-97; Chaperonin 10 Kd subunit
SCOP175 1-90 -52.700 47  d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}
VFDB 1-72 -6.070 22  VFG0967 (gi:15675354) hylP3 - hyaluronidase - phage associated [Streptococcus pyogenes SF370] (VF0246)
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 COG1214 1-558 -122.000 26  [L] COG0358 DNA primase (bacterial type)
H.sapiens 1-305 -35.300 14  sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 1-300)
123-413 -17.300 12  sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 151-450)
HGM_OVER 18-120 -2.830 13  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
JCSG1214 1-553 -123.000 26  TM1452 TM1452 283310 Selected-2001-10-12
NEW_HUMAN_DOMAINS 21-91 -6.760 22  sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 (Range: 322-408)
PDB1214 3-415 -102.000 31  2au3_A mol:protein length:407 DNA primase
423-559 -13.700 100  4ehs_A mol:protein length:155 DNA primase
PfamA27U 2-99 -58.300 46  PF01807.15; PRIM_PSEPU/5-102; CHC2 zinc finger
117-239 -48.600 38  PF08275.6; Q64P92_BACFR/123-254; DNA primase catalytic core, N-terminal domain
249-334 -42.100 44  PF13155.1; C5EJG0_9FIRM/258-343; Toprim-like
438-559 -13.600 98  PF16730; I9XGX3.1/438-559; DnaG-primase C-terminal, helicase-binding domain
SCOP175 1-98 -57.300 40  d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
106-411 -82.400 29  d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}
444-555 -10.300 14  d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 1-423 -4.970 10  VFG0739 (gi:2865299) eae - intimin [Escherichia coli E2348/69] (VF0177)
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 COG1214 2-347 -63.800 16  [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
H.sapiens 2-347 -57.600 13  sp|O75648|MTU1_HUMAN Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Homo sapiens GN=TRMU PE=1 SV=2
HGM_OVER 9-331 -3.020 10  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
JCSG1214 1-349 -91.300 35  SP9715A ZP_02993753.1 410385 Purified-2010-09-29
NEW_HUMAN_DOMAINS 1-77 -5.490 18  sp|Q8NAT1|AGO61_HUMAN Uncharacterized glycosyltransferase AGO61 OS=Homo sapiens GN=AGO61 PE=2 SV=1 (Range: 312-405)
PDB1214 2-347 -66.100 14  2hma_A mol:protein length:376 Probable tRNA (5-methylaminomethyl-2-thiourid
PfamA27U 4-347 -64.700 16  PF03054.11; MNMA_HAEIN/25-379; tRNA methyl transferase
SCOP175 3-234 -12.400 16  d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
5-201 -19.200 16  d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
VFDB 5-342 -6.340 12  VFG0959 (gi:15675016) fbp - Fbp54 [Streptococcus pyogenes SF370] (VF0243)
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 COG1214 2-260 -10.200 13  [S] COG3802 Uncharacterized protein conserved in bacteria
H.sapiens 7-239 -10.500 14  sp|Q6P587|FAHD1_HUMAN Fumarylacetoacetate hydrolase domain-containing protein 1 OS=Homo sapiens GN=FAHD1 PE=1 SV=2
HGM_OVER 65-256 -3.900 12  PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;
JCSG1214 1-275 -140.000 100  RH20375A NP_206816.1 416151 Selected-2009-12-04
NEW_HUMAN_DOMAINS 99-240 -6.210 15  sp|Q96JH7|VCIP1_HUMAN Deubiquitinating protein VCIP135 OS=Homo sapiens GN=VCPIP1 PE=1 SV=2 (Range: 42-180)
PDB1214 13-246 -11.000 15  3lzk_A mol:protein length:359 Fumarylacetoacetate hydrolase family protein
PfamA27U 7-239 -10.600 13  PF01557.13; Q1LF48_RALME/58-257; Fumarylacetoacetate (FAA) hydrolase family
SCOP175 7-239 -10.700 18  d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
VFDB 14-150 -4.400 14  VFG2072 (gi:15595284) PA0086 - hypothetical protein [Pseudomonas aeruginosa PAO1] (VF0334)
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 COG1214 5-91 -9.380 17  [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
H.sapiens 3-93 -8.770 15  sp|Q15878|CAC1E_HUMAN Voltage-dependent R-type calcium channel subunit alpha-1E OS=Homo sapiens GN=CACNA1E PE=1 SV=3 (Range: 601-900)
HGM_OVER 22-93 -4.750 12  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
JCSG1214 1-75 -7.290 20  SP2003B ZP_02037706.1 407199 Selected-2009-11-12
NEW_HUMAN_DOMAINS 38-79 -6.770 23  sp|Q5SV97|CA170_HUMAN Uncharacterized protein C1orf170 OS=Homo sapiens GN=C1orf170 PE=2 SV=3 (Range: 613-696)
PDB1214 21-71 -5.690 2cqr_A mol:protein length:73 DnaJ homolog subfamily C member 1
PfamA27U 1-93 -9.650 14  PF16943; K0D9D5.1/1-114; Cag pathogenicity island, type IV secretory system
SCOP175 36-71 -5.920 13  d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 21-91 -14.000 11  VFG2231 (gi:49476010) virB2 - virB2 protein homolog [Bartonella henselae Houston-1] (VF0369)
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 COG1214 11-86 -17.000 [U] COG3702 Type IV secretory pathway, VirB3 components
H.sapiens 7-78 -9.890 15  sp|Q8NC44|F134A_HUMAN Protein FAM134A OS=Homo sapiens GN=FAM134A PE=1 SV=3
HGM_OVER 5-87 -6.870 15  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
JCSG1214 14-68 -8.090 SP2008B NP_390344.1 406713 Purified-2010-09-29
NEW_HUMAN_DOMAINS 58-72 -6.830 46  tr|B4DED9|B4DED9_HUMAN Uncharacterized protein OS=Homo sapiens GN=MAPK8IP2 PE=2 SV=1 (Range: 1-64)
PDB1214 6-28 -7.510 21  1fjg_N mol:protein length:61 30S RIBOSOMAL PROTEIN S14
PfamA27U 3-87 -12.300 11  PF05101.8; A5I9X1_LEGPC/1-87; Type IV secretory pathway, VirB3-like protein
SCOP175 6-28 -7.700 21  d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}
VFDB 7-79 -17.500 12  VFG2232 (gi:49476011) virB3 - virB3 protein homolog [Bartonella henselae Houston-1] (VF0369)
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 COG1214 257-778 -62.900 15  [U] COG3451 Type IV secretory pathway, VirB4 components
H.sapiens 440-715 -9.660 15  sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 (Range: 1-300)
HGM_OVER 11-199 -11.300 10  HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
JCSG1214 3-767 -74.700 14  SP14324A YP_001088362.1 410039 Selected-2009-11-12
NEW_HUMAN_DOMAINS 443-566 -5.230 12  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB1214 295-778 -18.800 12  4d2i_A mol:protein length:500 HERA
404-764 -32.400 15  4ag5_A mol:protein length:392 TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LI
PfamA27U 23-201 -9.850 10  PF11130.3; B7WTT6_COMTE/34-311; F pilus assembly Type-IV secretion system for plasmid transfer
175-375 -48.900 14  PF03135.9; Q9ZE45_RICPR/194-399; CagE, TrbE, VirB family, component of type IV transporter system
435-759 -17.300 13  PF10412.4; A1WDH0_ACISJ/170-553; Type IV secretion-system coupling protein DNA-binding domain
441-717 -24.400 16  PF12846.2; A4JVD5_BURVG/498-898; AAA-like domain
SCOP175 435-787 -18.000 15  d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
VFDB 1-787 -142.000 30  VFG1981 (gi:32469876) virB4 - VirB4 [Campylobacter jejuni 81-176] (VF0325)
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 COG1214 1-469 -143.000 98  [S] COG3014 Uncharacterized protein conserved in bacteria
H.sapiens 20-240 -23.300 10  sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4 (Range: 1-300)
24-390 -19.400 11  sp|P19878|NCF2_HUMAN Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2
28-359 -22.500 sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3 (Range: 451-750)
HGM_OVER 1-113 -7.020 12  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
JCSG1214 1-254 -34.000 17  SP11148B ZP_02433752.1 410301 Purified-2010-09-29
21-345 -23.000 12  SP4516B ZP_02072920.1 409202 Selected-2009-11-12
26-469 -20.500 MA4516A NP_663582.2 400518 Cloned-2009-02-19
NEW_HUMAN_DOMAINS 34-152 -14.800 sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB1214 20-354 -20.400 2y4t_A mol:protein length:450 DNAJ HOMOLOG SUBFAMILY C MEMBER 3
21-251 -25.000 10  3u4t_A mol:protein length:272 TPR repeat-containing protein
32-391 -18.200 4buj_B mol:protein length:1436 SUPERKILLER PROTEIN 3
PfamA27U 20-160 -21.900 11  PF12968.2; Q8KAL8_CHLTE/2-145; Domain of Unknown Function (DUF3856 topsan)
20-240 -19.500 10  PF13429.1; Q39U81_GEOMG/198-480; Tetratricopeptide repeat
26-469 -18.300 10  PF12569.3; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
SCOP175 24-258 -24.900 d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}
26-392 -17.400 d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-241 -23.400 VFG1217 (gi:15599000) pilF - type 4 fimbrial biogenesis protein PilF [Pseudomonas aeruginosa PAO1] (VF0082)
20-388 -14.700 VFG0599 (gi:24114928) shiA - orf, conserved hypothetical protein [Shigella flexneri (serotype 2a) 301]
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 COG1214 1-198 -63.800 24  [NT] COG0835 Chemotaxis signal transduction protein
195-321 -25.000 [T] COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases
H.sapiens 197-321 -22.600 12  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
HGM_OVER 195-287 -3.720 18  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
JCSG1214 9-321 -98.700 22  GD10678B RER070207001006 388606 Selected-2007-09-21
NEW_HUMAN_DOMAINS 198-321 -21.000 sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB1214 10-175 -40.300 19  4jpb_W mol:protein length:151 Chemotaxis protein CheW
196-321 -35.200 24  1m5t_A mol:protein length:124 cell division response regulator DivK
PfamA27U 25-173 -12.700 11  PF01584.14; Q8XQ78_RALSO/559-691; CheW-like domain
199-315 -21.900 21  PF00072.19; AGMR_PSEAE/4-117; Response regulator receiver domain
SCOP175 18-175 -38.700 19  d2ch4w1 b.40.7.1 (W:9-147) Chemotaxis protein CheW {Thermotoga maritima [TaxId: 2336]}
196-321 -35.500 24  d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
VFDB 12-174 -28.800 11  VFG1227 (gi:15595607) pilI - twitching motility protein PilI [Pseudomonas aeruginosa PAO1] (VF0082)
191-321 -32.500 22  VFG1225 (gi:15595605) pilG - twitching motility protein PilG [Pseudomonas aeruginosa PAO1] (VF0082)
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 COG1214 5-395 -23.100 14  [E] KOG0622 Ornithine decarboxylase
H.sapiens 5-389 -24.400 14  sp|O14977|AZIN1_HUMAN Antizyme inhibitor 1 OS=Homo sapiens GN=AZIN1 PE=1 SV=2
HGM_OVER 13-170 -2.560 PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
JCSG1214 1-405 -142.000 100  XB5406A 2313093 358544 Purified-2005-03-29
NEW_HUMAN_DOMAINS 175-304 -5.340 11  sp|O95866|G6B_HUMAN Protein G6b OS=Homo sapiens GN=G6B PE=1 SV=1 (Range: 18-142)
PDB1214 2-405 -127.000 48  3n29_A mol:protein length:418 Carboxynorspermidine decarboxylase
PfamA27U 268-385 -14.500 18  PF00278.17; Q5LXE4_SILPO/280-393; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
SCOP175 15-266 -23.400 14  d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]}
215-395 -20.100 17  d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 12-171 -4.140 13  VFG1976 (gi:32469826) virB8 - VirB8 [Campylobacter jejuni 81-176] (VF0325)
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 COG1214 9-190 -49.700 14  [S] KOG4268 Uncharacterized conserved protein containing PAP2 domain
H.sapiens 8-189 -50.900 15  sp|Q8IY26|PPAC2_HUMAN Presqualene diphosphate phosphatase OS=Homo sapiens GN=PPAPDC2 PE=1 SV=3
HGM_OVER 51-188 -3.690 10  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
JCSG1214 35-189 -54.000 16  C.JNH21312E ZP_01995411.1 430135 Selected-2013-07-30
NEW_HUMAN_DOMAINS 120-170 -9.530 tr|E7ENG5|E7ENG5_HUMAN Uncharacterized protein OS=Homo sapiens GN=G6PC PE=4 SV=1 (Range: 83-178)
PDB1214 12-189 -37.100 15  4px7_A mol:protein length:262 Phosphatidylglycerophosphatase
PfamA27U 79-189 -36.200 14  PF01569.16; A7N7S4_VIBHB/78-234; PAP2 superfamily
SCOP175 55-181 -35.200 16  d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]}
VFDB 97-159 -7.090 VFG0960 (gi:15675290) grab - protein GRAB (protein G-related alpha 2M-binding protein) [Streptococcus pyogenes SF370] (VF0254)
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 COG1214 2-521 -123.000 25  [R] COG2194 Predicted membrane-associated, metal-dependent hydrolase
H.sapiens 216-517 -20.100 13  sp|Q6UWY0|ARSK_HUMAN(removed signalp:1-22) Arylsulfatase K OS=Homo sapiens GN=ARSK PE=2 SV=1
HGM_OVER 346-507 -3.420 13  PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
JCSG1214 1-518 -25.700 12  TT16481A NP_743993.1 404410 Selected-2009-08-14
NEW_HUMAN_DOMAINS 378-495 -5.670 14  sp|Q96JN8|NEUL4_HUMAN Neuralized-like protein 4 OS=Homo sapiens GN=NEURL4 PE=1 SV=2 (Range: 1316-1440)
PDB1214 168-521 -10.400 13  4uoo_A mol:protein length:459 LIPOTEICHOIC ACID SYNTHASE
208-521 -94.900 31  4kav_A mol:protein length:335 YhbX/YhjW/YijP/YjdB family protein
PfamA27U 56-207 -38.600 20  PF08019.7; A8FYE5_SHESH/59-214; Domain of unknown function (DUF1705 topsan)
195-500 -18.900 12  PF02995.12; Q9VIP6_DROME/62-563; Protein of unknown function (DUF229 topsan)
SCOP175 220-514 -13.700 12  d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-521 -85.000 17  VFG1440 (gi:4741821) ibeC - membrane protein YijP [Escherichia coli] (VF0237)


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.