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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 1872< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 TM0021 TM0021 281902 PDB-2003-02-27 102 SCOP175 2-100 -58.600 100  d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
22 TM0022 TM0022 281903 Purified-2006-07-20 516 SCOP175 5-219 -82.800 40  d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
218-329 -37.200 24  d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
354-511 -16.400 13  d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
23 TM0023 TM0023 281904 Purified-2001-08-24 656 SCOP175 299-351 -9.130 18  d2asxa1 a.274.1.1 (A:278-331) Hypothetical protein AF1503 {Archaeoglobus fulgidus [TaxId: 2234]}
24 TM0024 TM0024 281905 Purified-2001-08-24 642 SCOP175 13-190 -15.300 18  d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]}
198-458 -60.100 21  d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]}
279-553 -49.700 18  d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]}
488-642 -24.000 99  d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}
25 TM0025 TM0025 281906 Purified-2001-01-30 721 SCOP175 2-335 -43.900 27  d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
336-602 -32.900 20  d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
26 TM0026 TM0026 281907 Purified-2001-01-30 68 SCOP175 4-53 -6.390 37  d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
27 TM0027 TM0027 281908 Purified-2001-01-30 268 SCOP175 3-254 -67.800 30  d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
28 TM0028 TM0028 281909 Purified-2001-08-29 330 SCOP175 5-258 -60.200 26  d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
29 TM0029 TM0029 281910 Purified-2001-01-30 280 SCOP175 67-220 -16.300 17  d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
77-266 -11.200 12  d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
30 TM0030 TM0030 281911 Purified-2001-01-30 338 SCOP175 103-322 -9.830 15  d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
31 TM0031 TM0031 281912 Purified-2001-08-24 606 SCOP175 26-572 -117.000 31  d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
32 TM0032 TM0032 281913 Purified-2005-03-03 381 SCOP175 8-74 -33.400 25  d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
85-201 -36.600 18  d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}
204-381 -55.700 25  d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
33 TM0033 TM0033 281914 Purified-2001-08-24 395 SCOP175 19-393 -17.000 11  d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]}
173-393 -33.000 16  d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]}
34 TM0034 TM0034 281915 Purified-2001-08-29 357 SCOP175 84-234 -16.200 13  d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
142-349 -10.300 13  d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
188-316 -43.900 19  d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
35 TM0035 TM0035 281916 Purified-2001-08-24 485 SCOP175 342-481 -6.250 12  d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}
36 TM0036 TM0036 281917 Purified-2001-08-24 174 SCOP175 1-168 -58.600 47  d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
37 TM0037 TM0037 281918 Purified-2001-08-24 416 SCOP175 116-367 -12.400 12  d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]}
201-406 -10.800 17  d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}
38 TM0038 TM0038 281919 Purified-2001-02-14 120 SCOP175 1-117 -60.800 33  d2g64a1 d.96.1.2 (A:1-139) 6-pyruvoyl tetrahydropterin synthase {Caenorhabditis elegans [TaxId: 6239]}
39 TM0039 TM0039 281920 Crystal|NMR-2008-01-13 259 SCOP175 48-216 -5.210 d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]}
40 TM0040 TM0040 281921 Purified-2003-03-06 278 SCOP175 16-277 -101.000 36  d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.