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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 1872< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 TM0021 TM0021 281902 PDB-2003-02-27 102 SCOP175 1-100 -54.000 100  d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
22 TM0022 TM0022 281903 Purified-2006-07-20 516 SCOP175 5-219 -84.400 40  d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
218-329 -39.000 24  d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
350-516 -26.500 13  d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
23 TM0023 TM0023 281904 Purified-2001-08-24 656 SCOP175 299-351 -8.730 18  d2asxa1 a.274.1.1 (A:278-331) Hypothetical protein AF1503 {Archaeoglobus fulgidus [TaxId: 2234]}
24 TM0024 TM0024 281905 Purified-2001-08-24 642 SCOP175 203-461 -68.000 22  d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]}
244-493 -38.000 14  d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]}
488-642 -21.600 99  d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}
25 TM0025 TM0025 281906 Purified-2001-01-30 721 SCOP175 2-335 -67.600 26  d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
336-602 -49.200 20  d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
436-710 -15.300 d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}
26 TM0026 TM0026 281907 Purified-2001-01-30 68 SCOP175 1-53 -7.740 37  d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
27 TM0027 TM0027 281908 Purified-2001-01-30 268 SCOP175 3-254 -67.400 30  d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
28 TM0028 TM0028 281909 Purified-2001-08-29 330 SCOP175 5-258 -60.100 26  d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
29 TM0029 TM0029 281910 Purified-2001-01-30 280 SCOP175 67-220 -17.900 17  d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
77-266 -11.500 13  d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
30 TM0030 TM0030 281911 Purified-2001-01-30 338 SCOP175 103-322 -11.400 16  d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
31 TM0031 TM0031 281912 Purified-2001-08-24 606 SCOP175 26-572 -105.000 31  d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
32 TM0032 TM0032 281913 Purified-2005-03-03 381 SCOP175 8-74 -32.400 25  d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
83-196 -35.600 21  d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
204-381 -51.600 25  d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
33 TM0033 TM0033 281914 Purified-2001-08-24 395 SCOP175 60-395 -25.700 11  d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]}
134-395 -31.100 14  d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]}
167-395 -42.300 14  d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
34 TM0034 TM0034 281915 Purified-2001-08-29 357 SCOP175 79-234 -22.100 12  d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
188-316 -39.400 20  d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
192-357 -14.700 18  d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}
35 TM0035 TM0035 281916 Purified-2001-08-24 485 SCOP175 44-181 -5.530 16  d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
36 TM0036 TM0036 281917 Purified-2001-08-24 174 SCOP175 1-168 -53.400 47  d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
37 TM0037 TM0037 281918 Purified-2001-08-24 416 SCOP175 116-339 -12.000 10  d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]}
202-412 -13.700 17  d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}
38 TM0038 TM0038 281919 Purified-2001-02-14 120 SCOP175 1-117 -62.900 33  d2g64a1 d.96.1.2 (A:1-139) 6-pyruvoyl tetrahydropterin synthase {Caenorhabditis elegans [TaxId: 6239]}
39 TM0039 TM0039 281920 Crystal|NMR-2008-01-13 259 SCOP175 41-221 -6.130 11  d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
40 TM0040 TM0040 281921 Purified-2003-03-06 278 SCOP175 2-276 -102.000 43  d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.