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Results: 21-40 of 55674< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 601-900) 300 COG0614 4-300 -37.100 27  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)
H.sapiens 10-300 -78.200 36  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 301-600)
HGM_OVER 3-133 -4.120 17  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
NEW_HUMAN_DOMAINS 41-119 -5.890 16  sp|Q86TW2|ADCK1_HUMAN Uncharacterized aarF domain-containing protein kinase 1 OS=Homo sapiens GN=ADCK1 PE=1 SV=2 (Range: 1-142)
PDB0614 5-116 -15.300 16  1u5e_A mol:protein length:211 Src-associated adaptor protein
74-300 -32.200 93  2rlo_A mol:protein length:128 Centaurin-gamma 1
PfamA27U 1-135 -16.600 PF00373.13; Q4T8R8_TETNG/88-414; FERM central domain
228-291 -22.500 PF01412.13; Q1RQ02_CIOIN/430-546; Putative GTPase activating protein for Arf
SCOP175 4-116 -14.900 17  d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}
78-163 -16.400 15  d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}
227-291 -22.500 d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 2-135 -6.830 11  VFG1219 (gi:15600234) pilP - type 4 fimbrial biogenesis protein PilP [Pseudomonas aeruginosa PAO1] (VF0082)
22 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 751-1050) 300 COG0614 1-300 -73.300 42  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)
H.sapiens 2-300 -90.900 46  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 451-750)
HGM_OVER 126-287 -5.830 12  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]
NEW_HUMAN_DOMAINS 155-227 -6.650 17  sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 (Range: 553-630)
PDB0614 11-161 -14.700 13  1u5e_A mol:protein length:211 Src-associated adaptor protein
53-173 -15.900 17  2da0_A mol:protein length:114 130-kDa phosphatidylinositol 4,5-biphosphate-
153-300 -68.900 36  3t9k_A mol:protein length:390 Arf-GAP with coiled-coil, ANK repeat and PH d
PfamA27U 61-160 -13.100 15  PF00169.24; MYO10_BOVIN/1207-1304; PH domain
181-297 -58.900 40  PF01412.13; Q1RQ02_CIOIN/430-546; Putative GTPase activating protein for Arf
SCOP175 8-161 -14.700 14  d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}
45-181 -15.000 10  d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}
58-158 -15.400 14  d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
180-296 -58.100 41  d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 152-280 -7.860 10  VFG1843 (gi:52840700) icmJ - IcmJ (DotN) [Legionella pneumophila Philadelphia 1] (VF0156)
23 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 901-1192) 292 COG0614 1-252 -87.100 59  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)
1-288 -62.800 27  [T] KOG0521 Putative GTPase activating proteins (GAPs)
H.sapiens 6-278 -102.000 57  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 601-875)
HGM_OVER 11-132 -4.080 11  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
NEW_HUMAN_DOMAINS 5-77 -7.610 17  sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 (Range: 553-630)
PDB0614 27-291 -90.400 27  1dcq_A mol:protein length:278 PYK2-ASSOCIATED PROTEIN BETA
PfamA27U 31-147 -61.200 40  PF01412.13; Q1RQ02_CIOIN/430-546; Putative GTPase activating protein for Arf
96-254 -14.500 12  PF12796.2; A3YC40_9GAMM/544-718; Ankyrin repeats (3 copies)
SCOP175 4-288 -15.700 15  d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
30-146 -60.500 41  d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
158-290 -22.100 18  d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 2-130 -8.580 10  VFG1843 (gi:52840700) icmJ - IcmJ (DotN) [Legionella pneumophila Philadelphia 1] (VF0156)
24 sp|P52895|AK1C2_HUMAN Aldo-keto reductase family 1 member C2 OS=Homo sapiens GN=AKR1C2 PE=1 SV=3 323 COG0614 5-323 -126.000 48  [R] KOG1577 Aldo/keto reductase family proteins
H.sapiens 1-323 -131.000 87  sp|P42330|AK1C3_HUMAN Aldo-keto reductase family 1 member C3 OS=Homo sapiens GN=AKR1C3 PE=1 SV=4
HGM_OVER 148-298 -3.940 13  PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
NEW_HUMAN_DOMAINS 102-191 -5.280 11  sp|A6NFU0|F187A_HUMAN Ig-like V-type domain-containing protein FAM187A OS=Homo sapiens GN=FAM187A PE=3 SV=1 (Range: 142-237)
PDB0614 1-323 -131.000 97  1mrq_A mol:protein length:323 Aldo-keto reductase family 1 member C1
PfamA27U 18-299 -35.300 23  PF00248.16; A6F7D1_9GAMM/12-313; Aldo/keto reductase family
SCOP175 5-321 -126.000 48  d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]}
VFDB 25-304 -5.380 12  VFG0477 (gi:16766230) rpoS - sigma S (sigma 38) factor of RNA polymerase, major sigmafactor during stationary phase [Salmonella enterica (serovar typhimurium) LT2] (VF0112)
25 sp|P05062|ALDOB_HUMAN Fructose-bisphosphate aldolase B OS=Homo sapiens GN=ALDOB PE=1 SV=2 364 COG0614 1-364 -124.000 69  [G] KOG1557 Fructose-biphosphate aldolase
H.sapiens 1-364 -128.000 70  sp|P09972|ALDOC_HUMAN Fructose-bisphosphate aldolase C OS=Homo sapiens GN=ALDOC PE=1 SV=2
HGM_OVER 146-238 -2.730 16  HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 190-297 -5.430 14  sp|Q9NVU7|SDA1_HUMAN Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=3 (Range: 297-408)
PDB0614 2-364 -129.000 99  1xdl_A mol:protein length:365 Fructose-bisphosphate aldolase B
PfamA27U 15-364 -124.000 59  PF00274.14; Q9GPK1_HETGL/19-366; Fructose-bisphosphate aldolase class-I
SCOP175 5-348 -121.000 48  d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
VFDB 9-287 -5.130 11  VFG2310 (gi:123443695) pilN - putative type IV pilus operon lipoprotein [Yersinia enterocolitica 8081] (VF0401)
26 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 1-300) 300 COG0614 24-300 -15.100 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
H.sapiens 1-274 -61.700 35  sp|Q4VCS5|AMOT_HUMAN Angiomotin OS=Homo sapiens GN=AMOT PE=1 SV=1 (Range: 1-300)
HGM_OVER 7-68 -5.580 HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
NEW_HUMAN_DOMAINS 1-35 -6.090 42  sp|Q01954|BNC1_HUMAN Zinc finger protein basonuclin-1 OS=Homo sapiens GN=BNC1 PE=1 SV=2 (Range: 34-186)
PDB0614 1-295 -9.230 12  3h0g_A mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
PfamA27U 1-219 -9.770 PF05934.6; CLCC1_HUMAN/3-551; Mid-1-related chloride channel (MCLC)
33-300 -11.100 PF11725.3; A8E3E7_PSEVI/1-1719; Pathogenicity factor
SCOP175 4-24 -6.020 23  d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
VFDB 1-245 -12.900 VFG1281 (gi:21282247) sdrE - Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [Staphylococcus aureus MW2] (VF0019)
27 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 151-450) 300 COG0614 86-295 -12.300 [U] KOG1955 Ral-GTPase effector RALBP1
144-300 -19.700 [R] KOG0804 Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein)
H.sapiens 1-246 -25.100 20  sp|Q4VCS5|AMOT_HUMAN Angiomotin OS=Homo sapiens GN=AMOT PE=1 SV=1 (Range: 151-450)
52-300 -25.900 32  sp|Q8IY63|AMOL1_HUMAN Angiomotin-like protein 1 OS=Homo sapiens GN=AMOTL1 PE=1 SV=1 (Range: 301-600)
154-300 -27.100 46  sp|Q4VCS5|AMOT_HUMAN Angiomotin OS=Homo sapiens GN=AMOT PE=1 SV=1 (Range: 301-600)
HGM_OVER 177-300 -8.930 PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
NEW_HUMAN_DOMAINS 161-300 -14.000 sp|Q68CZ6|HAUS3_HUMAN HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1 SV=1 (Range: 442-603)
PDB0614 156-300 -17.600 17  2efr_A mol:protein length:155 General control protein GCN4 and Tropomyosin
PfamA27U 137-299 -18.800 10  PF10168.4; Q707M9_XENLA/4-726; Nuclear pore component
SCOP175 151-298 -12.900 14  d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-300 -10.800 VFG1281 (gi:21282247) sdrE - Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [Staphylococcus aureus MW2] (VF0019)
144-300 -15.900 13  VFG0987 (gi:18462580) ipaB - IpaB, secreted by the Mxi-Spa machinery, required for entry of bacteria into epithelial cells [Shigella flexneri (serotype 2a) 301] (VF0118)
28 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 301-600) 300 COG0614 2-296 -26.100 10  [Z] KOG1003 Actin filament-coating protein tropomyosin
H.sapiens 1-300 -28.900 11  sp|Q9Y250|LZTS1_HUMAN Leucine zipper putative tumor suppressor 1 OS=Homo sapiens GN=LZTS1 PE=1 SV=3
HGM_OVER 12-66 -4.750 24  PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
NEW_HUMAN_DOMAINS 1-69 -8.670 18  tr|B5MDG7|B5MDG7_HUMAN Uncharacterized protein OS=Homo sapiens GN=HMG20B PE=4 SV=2 (Range: 199-286)
PDB0614 2-296 -26.800 10  1c1g_A mol:protein length:284 TROPOMYOSIN
PfamA27U 1-300 -23.600 15  PF01576.14; O44934_LOLPE/1067-1925; Myosin tail
SCOP175 17-186 -7.080 d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 1-300 -23.200 13  VFG0950 (gi:21911263) emm3 - M protein type 3 [Streptococcus pyogenes (serotype M3) MGAS315] (VF0242)
29 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 451-750) 300 COG0614 1-251 -19.000 [S] KOG2216 Conserved coiled/coiled coil protein
1-299 -13.800 11  [M] COG3264 Small-conductance mechanosensitive channel
2-216 -22.300 10  [S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain
H.sapiens 28-213 -24.400 55  sp|Q8IY63|AMOL1_HUMAN Angiomotin-like protein 1 OS=Homo sapiens GN=AMOTL1 PE=1 SV=1 (Range: 601-900)
162-300 -24.600 100  sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 601-779)
HGM_OVER 1-165 -8.240 PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
NEW_HUMAN_DOMAINS 257-300 -10.300 13  tr|Q6ZR73|Q6ZR73_HUMAN Phospholipid scramblase 4, isoform CRA_a OS=Homo sapiens GN=PLSCR4 PE=2 SV=1 (Range: 21-98)
PDB0614 1-254 -18.300 1jch_A mol:protein length:551 COLICIN E3
2-216 -19.300 13  1c1g_A mol:protein length:284 TROPOMYOSIN
PfamA27U 1-281 -16.300 11  PF13779.1; A9D7X3_9RHIZ/37-855; Domain of unknown function (DUF4175 topsan)
2-245 -17.800 PF10168.4; Q707M9_XENLA/4-726; Nuclear pore component
3-216 -19.500 11  PF00261.15; Q805C4_TAKRU/12-248; Tropomyosin
34-209 -23.800 60  PF12240.3; B1AXE8_MOUSE/396-605; Angiomotin C terminal
SCOP175 23-208 -8.420 d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
VFDB 1-289 -18.600 12  VFG0261 (gi:15676598) iga - IgA-specific serine endopeptidase [Neisseria meningitidis MC58 (serogroup B)] (VF0080)
30 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 601-779) 179 COG0614 2-124 -7.410 [S] KOG4418 Predicted membrane protein
H.sapiens 25-179 -46.100 36  sp|Q8IY63|AMOL1_HUMAN Angiomotin-like protein 1 OS=Homo sapiens GN=AMOTL1 PE=1 SV=1 (Range: 751-956)
HGM_OVER 6-62 -5.030 24  HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;
NEW_HUMAN_DOMAINS 1-52 -7.860 23  sp|O94933|SLIK3_HUMAN SLIT and NTRK-like protein 3 OS=Homo sapiens GN=SLITRK3 PE=2 SV=2 (Range: 777-977)
PDB0614 6-71 -7.080 12  3n4x_A mol:protein length:190 Monopolin complex subunit CSM1
PfamA27U 12-88 -11.300 48  PF12240.3; B1AXE8_MOUSE/396-605; Angiomotin C terminal
SCOP175 17-68 -5.570 d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]}
VFDB 9-49 -4.820 22  VFG1699 (gi:26249397) c3562 - Hypothetical protein [Escherichia coli CFT073]
31 sp|O43827|ANGL7_HUMAN(removed signalp:1-26) Angiopoietin-related protein 7 OS=Homo sapiens GN=ANGPTL7 PE=1 SV=1 320 COG0614 1-315 -85.600 32  [R] KOG2579 Ficolin and related extracellular proteins
H.sapiens 1-318 -98.800 35  sp|O15123|ANGP2_HUMAN(removed signalp:1-18) Angiopoietin-2 OS=Homo sapiens GN=ANGPT2 PE=1 SV=1
HGM_OVER 143-225 -3.840 21  PB045813 Q5LF03_BACFN/1-275 PB045813; Pfam-B_45813;
NEW_HUMAN_DOMAINS 122-265 -5.550 11  sp|Q12836|ZP4_HUMAN Zona pellucida sperm-binding protein 4 OS=Homo sapiens GN=ZP4 PE=2 SV=1 (Range: 20-134)
PDB0614 30-315 -93.500 33  1lwu_B mol:protein length:323 Fibrinogen beta chain
94-320 -101.000 42  4jyo_X mol:protein length:230 Angiopoietin-1
PfamA27U 102-316 -95.200 41  PF00147.13; TENA_CHICK/1587-1796; Fibrinogen beta and gamma chains, C-terminal globular domain
SCOP175 102-318 -99.100 48  d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
VFDB 110-311 -6.260 12  VFG0083 (gi:15640837) tagA - ToxR-activated gene A protein [Vibrio cholerae N16961]
32 sp|Q8N6D5|ANR29_HUMAN Ankyrin repeat domain-containing protein 29 OS=Homo sapiens GN=ANKRD29 PE=2 SV=2 301 COG0614 1-301 -68.200 16  [R] KOG0508 Ankyrin repeat protein
36-265 -74.000 27  [O] KOG4412 26S proteasome regulatory complex, subunit PSMD10
H.sapiens 4-301 -91.600 30  sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3 (Range: 301-600)
HGM_OVER 68-264 -3.120 12  PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]
NEW_HUMAN_DOMAINS 211-296 -12.500 26  tr|C9JBQ0|C9JBQ0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABTB1 PE=4 SV=1 (Range: 1-104)
PDB0614 1-301 -78.700 22  1s70_B mol:protein length:299 130 kDa myosin-binding subunit of smooth musc
36-270 -81.400 26  3b7b_A mol:protein length:237 Euchromatic histone-lysine N-methyltransferas
PfamA27U 50-241 -48.200 20  PF12796.2; A3YC40_9GAMM/544-718; Ankyrin repeats (3 copies)
SCOP175 1-301 -77.100 28  d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
VFDB 19-288 -9.680 13  VFG1883 (gi:52842845) enhC - enhanced entry protein EnhC [Legionella pneumophila Philadelphia 1] (VF0163)
33 sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1 157 COG0614 1-153 -81.600 71  [U] KOG0934 Clathrin adaptor complex, small subunit
H.sapiens 1-157 -84.400 87  sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1
HGM_OVER 52-154 -3.700 12  PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;
NEW_HUMAN_DOMAINS 79-137 -7.230 13  sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3 (Range: 1684-1756)
PDB0614 1-157 -84.400 87  1w63_Q mol:protein length:158 ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SU
PfamA27U 1-139 -61.600 18  PF01217.15; COPZ1_BOVIN/12-153; Clathrin adaptor complex small chain
SCOP175 1-141 -76.000 46  d1gw5s_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 57-116 -4.890 16  VFG0818 (gi:15804235) Z5125 - - [Escherichia coli O157:H7 EDL933]
34 sp|Q6Q788|APOA5_HUMAN(removed signalp:1-23) Apolipoprotein A-V OS=Homo sapiens GN=APOA5 PE=1 SV=1 343 COG0614 2-343 -10.200 [S] COG1511 Predicted membrane protein
26-290 -18.300 [S] KOG4744 Uncharacterized conserved protein
70-337 -16.200 [R] KOG4331 Polytopic membrane protein Prominin
H.sapiens 1-342 -28.200 25  sp|P06727|APOA4_HUMAN(removed signalp:1-20) Apolipoprotein A-IV OS=Homo sapiens GN=APOA4 PE=1 SV=3
HGM_OVER 19-161 -4.480 16  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
NEW_HUMAN_DOMAINS 8-342 -11.900 11  sp|Q9P1Z9|CI174_HUMAN Uncharacterized protein C9orf174 OS=Homo sapiens GN=C9orf174 PE=1 SV=2 (Range: 319-675)
PDB0614 12-312 -24.500 13  2l7b_A mol:protein length:307 Apolipoprotein E
55-315 -30.400 26  3s84_A mol:protein length:273 Apolipoprotein A-IV
PfamA27U 1-342 -15.700 12  PF13779.1; A9D7X3_9RHIZ/37-855; Domain of unknown function (DUF4175 topsan)
31-296 -31.100 25  PF01442.13; APOA4_BOVIN/60-323; Apolipoprotein A1/A4/E domain
SCOP175 96-239 -20.400 14  d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
VFDB 2-342 -22.800 VFG1097 (gi:15641767) VC1764 - hypothetical protein [Vibrio cholerae N16961]
35 sp|P15514|AREG_HUMAN(removed signalp:1-26) Amphiregulin OS=Homo sapiens GN=AREG PE=1 SV=2 226 COG0614 2-215 -10.300 [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
126-226 -13.100 11  [S] COG4640 Predicted membrane protein
H.sapiens 4-226 -37.400 13  sp|P56975|NRG3_HUMAN Pro-neuregulin-3, membrane-bound isoform OS=Homo sapiens GN=NRG3 PE=1 SV=1 (Range: 151-450)
46-221 -46.500 24  sp|Q99075|HBEGF_HUMAN(removed signalp:1-23) Proheparin-binding EGF-like growth factor OS=Homo sapiens GN=HBEGF PE=1 SV=1
HGM_OVER 119-197 -5.160 HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
NEW_HUMAN_DOMAINS 116-161 -12.700 21  sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2 (Range: 2355-2445)
128-204 -11.500 12  tr|E9PFX4|E9PFX4_HUMAN Uncharacterized protein OS=Homo sapiens GN=LTK PE=4 SV=1 (Range: 276-395)
PDB0614 2-157 -15.400 10  4k0v_A mol:protein length:529 TEK tyrosine kinase variant
83-159 -27.300 33  1xdt_R mol:protein length:79 HEPARIN-BINDING EPIDERMAL GROWTH FACTOR
PfamA27U 2-157 -9.980 PF06247.6; Q968Z9_9APIC/23-221; Plasmodium ookinete surface protein Pvs28
119-223 -11.800 PF13908.1; Q6DC69_DANRE/23-231; Wnt and FGF inhibitory regulator
SCOP175 115-162 -21.000 27  d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}
VFDB 167-226 -7.450 VFG1209 (gi:15599749) pilX - type 4 fimbrial biogenesis protein PilX [Pseudomonas aeruginosa PAO1] (VF0082)
36 sp|Q8N8L6|ARL10_HUMAN(removed signalp:1-21) ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1 223 COG0614 3-222 -11.000 20  [R] KOG0410 Predicted GTP binding protein
40-220 -78.900 30  [U] KOG0070 GTP-binding ADP-ribosylation factor Arf1
H.sapiens 40-223 -78.700 34  sp|Q6T311|ARL9_HUMAN ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1
HGM_OVER 13-167 -5.770 11  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
NEW_HUMAN_DOMAINS 38-182 -7.170 10  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0614 37-220 -79.000 30  3aq4_A mol:protein length:184 ADP-ribosylation factor 1
PfamA27U 45-217 -75.700 32  PF00025.16; TRI23_RAT/390-564; ADP-ribosylation factor family
SCOP175 55-218 -74.300 29  d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}
VFDB 54-217 -17.600 14  VFG1062 (gi:15808742) orf46 - unknown [Shigella flexneri (serotype 2a) YSH6000]
37 sp|Q8TBH0|ARRD2_HUMAN Arrestin domain-containing protein 2 OS=Homo sapiens GN=ARRDC2 PE=2 SV=2 407 COG0614 1-406 -98.500 52  [R] KOG3780 Thioredoxin binding protein TBP-2/VDUP1
H.sapiens 1-406 -98.500 52  sp|Q96B67|ARRD3_HUMAN Arrestin domain-containing protein 3 OS=Homo sapiens GN=ARRDC3 PE=1 SV=1
HGM_OVER 179-300 -6.740 HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
NEW_HUMAN_DOMAINS 304-405 -4.790 sp|Q5T1R4|ZEP3_HUMAN Transcription factor HIVEP3 OS=Homo sapiens GN=HIVEP3 PE=1 SV=1 (Range: 1111-1260)
PDB0614 1-351 -70.300 16  3p2d_A mol:protein length:393 Beta-arrestin-2
2-322 -88.900 36  4ll1_A mol:protein length:315 Thioredoxin-interacting protein
3-390 -68.200 13  1jsy_A mol:protein length:418 Bovine arrestin-2 (full length)
PfamA27U 3-289 -57.100 12  PF03643.10; VP26A_HUMAN/8-283; Vacuolar protein sorting-associated protein 26
SCOP175 28-152 -15.400 16  d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
164-351 -35.300 15  d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
VFDB 5-130 -5.420 11  VFG0888 (gi:26249420) papE - PapE protein [Escherichia coli CFT073] (VF0220)
38 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 1-300) 300 COG0614 3-274 -13.000 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
H.sapiens 1-275 -63.300 27  sp|Q9Y6X0|SETBP_HUMAN SET-binding protein OS=Homo sapiens GN=SETBP1 PE=1 SV=3 (Range: 1-300)
HGM_OVER 44-105 -4.130 13  PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;
NEW_HUMAN_DOMAINS 50-108 -4.660 18  sp|Q86UK5|LBN_HUMAN Limbin OS=Homo sapiens GN=EVC2 PE=1 SV=1 (Range: 930-987)
PDB0614 97-276 -6.780 4jjn_K mol:protein length:382 Regulatory protein SIR3
PfamA27U 1-221 -7.910 PF05609.7; TOIP1_RAT/122-583; Lamina-associated polypeptide 1C (LAP1C)
SCOP175 84-105 -4.520 27  d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
VFDB 2-274 -10.700 VFG1316 (gi:21282026) geh - glycerol ester hydrolase [Staphylococcus aureus MW2] (VF0012)
39 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 151-450) 300 COG0614 1-285 -12.600 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
H.sapiens 1-150 -22.900 100  sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 1-300)
151-300 -45.200 100  sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 301-600)
HGM_OVER 2-57 -2.910 HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
NEW_HUMAN_DOMAINS 255-300 -6.510 21  tr|B4DUT6|B4DUT6_HUMAN Uncharacterized protein OS=Homo sapiens GN=DCAF4 PE=2 SV=1 (Range: 133-214)
PDB0614 277-297 -5.540 38  1eci_A mol:protein length:37 ECTATOMIN
PfamA27U 263-299 -7.070 27  PF14448.1; Q6HGD4_BACHK/1-60; Nuclease N terminal
SCOP175 277-297 -5.540 38  d1ecia_ a.33.1.1 (A:) Ectatomin subunit A, EA {Ant (Ectatomma tuberculatum), venom [TaxId: 39300]}
VFDB 98-228 -5.870 10  VFG0458 (gi:16764500) csgA - curlin major subunit, coiled surface structures; cryptic [Salmonella enterica (serovar typhimurium) LT2] (VF0103)
40 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 301-600) 300 COG0614 97-185 -4.630 12  [M] COG2980 Rare lipoprotein B
H.sapiens 1-150 -45.200 100  sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 151-450)
151-299 -26.000 100  sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 451-750)
HGM_OVER 94-180 -2.970 HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;
NEW_HUMAN_DOMAINS 125-225 -6.190 20  tr|Q5T282|Q5T282_HUMAN Small nuclear RNA activating complex, polypeptide 3, 50kDa (Fragment) OS=Homo sapiens GN=SNAPC3 PE=2 SV=1 (Range: 83-191)
PDB0614 69-185 -6.300 12  2r76_A mol:protein length:152 Rare lipoprotein B
PfamA27U 116-179 -5.610 12  PF09951.4; Q11W44_CYTH3/18-107; Protein of unknown function (DUF2185 topsan)
SCOP175 114-163 -5.510 14  d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 50-299 -5.060 VFG1281 (gi:21282247) sdrE - Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [Staphylococcus aureus MW2] (VF0019)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Grynberg M, Li Z, Szczurek E, Godzik A. Putative type IV secretion genes in Bacillus anthracis. Trends Microbiol. 2007 May;15(5):191-5. Epub 2007 Mar 26.