current user: public




Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 55674< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 601-900) 300 COG0113 1-275 -29.800 10  [F] KOG1738 Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like
37-300 -30.700 11  [T] KOG0521 Putative GTPase activating proteins (GAPs)
55-223 -37.700 11  [TV] KOG1739 Serine/threonine protein kinase GPBP
PDB0113 4-178 -41.500 14  1u5e_A mol:protein length:211 Src-associated adaptor protein
74-181 -48.800 64  2rlo_A mol:protein length:128 Centaurin-gamma 1
75-233 -41.000 2j59_M mol:protein length:168 RHO-GTPASE ACTIVATING PROTEIN 10
PfamA26U 35-300 -32.400 PF00373.13; Q4T8R8_TETNG/88-414; FERM central domain
77-177 -37.700 15  PF00169.24; MYO10_BOVIN/1207-1304; PH domain
SCOP175 4-180 -41.500 14  d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}
70-193 -42.100 12  d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
22 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 751-1050) 300 COG0113 7-300 -69.400 42  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)
39-300 -73.600 26  [T] KOG0521 Putative GTPase activating proteins (GAPs)
PDB0113 1-161 -18.300 11  1u5e_A mol:protein length:211 Src-associated adaptor protein
58-162 -18.800 14  1u2b_A mol:protein length:138 Cytohesin 3
156-300 -68.100 37  3t9k_A mol:protein length:390 Arf-GAP with coiled-coil, ANK repeat and PH d
PfamA26U 65-160 -14.100 13  PF00169.24; MYO10_BOVIN/1207-1304; PH domain
181-297 -59.900 40  PF01412.13; Q1RQ02_CIOIN/430-546; Putative GTPase activating protein for Arf
SCOP175 1-161 -18.200 11  d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}
180-296 -59.000 41  d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
23 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 901-1192) 292 COG0113 1-252 -82.100 59  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)
1-282 -69.400 28  [T] KOG0521 Putative GTPase activating proteins (GAPs)
PDB0113 27-290 -88.500 27  1dcq_A mol:protein length:278 PYK2-ASSOCIATED PROTEIN BETA
PfamA26U 31-146 -58.900 39  PF01412.13; Q1RQ02_CIOIN/430-546; Putative GTPase activating protein for Arf
94-254 -15.600 12  PF12796.2; A3YC40_9GAMM/544-718; Ankyrin repeats (3 copies)
SCOP175 2-254 -13.200 14  d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}
30-146 -57.900 41  d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
149-291 -21.400 16  d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}
24 sp|P52895|AK1C2_HUMAN Aldo-keto reductase family 1 member C2 OS=Homo sapiens GN=AKR1C2 PE=1 SV=3 323 COG0113 4-323 -128.000 48  [R] KOG1577 Aldo/keto reductase family proteins
PDB0113 1-323 -133.000 97  1mrq_A mol:protein length:323 Aldo-keto reductase family 1 member C1
PfamA26U 18-299 -40.100 21  PF00248.16; A6F7D1_9GAMM/12-313; Aldo/keto reductase family
SCOP175 4-321 -127.000 48  d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]}
25 sp|P05062|ALDOB_HUMAN Fructose-bisphosphate aldolase B OS=Homo sapiens GN=ALDOB PE=1 SV=2 364 COG0113 1-364 -129.000 69  [G] KOG1557 Fructose-biphosphate aldolase
PDB0113 2-364 -133.000 99  1xdl_A mol:protein length:365 Fructose-bisphosphate aldolase B
PfamA26U 15-364 -126.000 59  PF00274.14; Q9GPK1_HETGL/19-366; Fructose-bisphosphate aldolase class-I
SCOP175 3-348 -121.000 47  d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
26 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 1-300) 300 COG0113 2-297 -9.520 11  [R] KOG0562 Predicted hydrolase (HIT family)
155-300 -9.750 [TV] KOG3966 p53-mediated apoptosis protein EI24/PIG8
PDB0113 1-300 -8.760 11  3J1N Entity 1(prereleased)
PfamA26U 1-111 -8.520 18  PF04094.9; Q8S5S8_ORYSJ/246-1073; Protein of unknown function (DUF390 topsan)
SCOP175 1-38 -6.920 21  d2p84a1 b.172.1.1 (A:3-135) Orf041 product {Staphylococcus phage 37 [TaxId: 320840]}
27 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 151-450) 300 COG0113 59-300 -10.800 12  [S] KOG3270 Uncharacterized conserved protein
106-300 -13.700 10  [UD] KOG2218 ER to golgi transport protein/RAD50-interacting protein 1
144-299 -17.100 10  [YU] KOG4460 Nuclear pore complex, Nup88/rNup84 component
PDB0113 144-300 -15.500 11  1jch_A mol:protein length:551 COLICIN E3
PfamA26U 1-300 -11.500 13  PF08549.5; Q4WMY0_ASPFU/1-664; Fungal domain of unknown function (DUF1750 topsan)
144-299 -18.600 12  PF10168.4; Q707M9_XENLA/4-726; Nuclear pore component
SCOP175 167-300 -11.200 d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
28 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 301-600) 300 COG0113 1-300 -23.300 10  [D] KOG4438 Centromere-associated protein NUF2
PDB0113 2-296 -22.100 10  2tma_A mol:protein length:284 TROPOMYOSIN
PfamA26U 1-300 -21.200 15  PF01576.14; O44934_LOLPE/1067-1925; Myosin tail
SCOP175 24-193 -12.000 d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
29 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 451-750) 300 COG0113 2-199 -19.600 [S] KOG4687 Uncharacterized coiled-coil protein
2-298 -19.000 [S] KOG2216 Conserved coiled/coiled coil protein
PDB0113 1-230 -18.200 10  1jch_A mol:protein length:551 COLICIN E3
2-298 -10.100 13  1i84_S mol:protein length:1184 SMOOTH MUSCLE MYOSIN HEAVY CHAIN
PfamA26U 1-286 -15.300 11  PF13779.1; A9D7X3_9RHIZ/37-855; Domain of unknown function (DUF4175 topsan)
2-245 -17.600 PF10168.4; Q707M9_XENLA/4-726; Nuclear pore component
3-213 -18.000 12  PF00261.15; Q805C4_TAKRU/12-248; Tropomyosin
34-199 -22.000 38  PF12240.3; B1AXE8_MOUSE/396-605; Angiomotin C terminal
SCOP175 2-200 -10.400 11  d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
30 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 601-779) 179 COG0113 1-96 -7.910 10  [R] KOG3163 Uncharacterized conserved protein related to ribosomal protein S8E
PDB0113 9-71 -8.130 12  3n4x_A mol:protein length:190 Monopolin complex subunit CSM1
PfamA26U 9-59 -10.900 54  PF12240.3; B1AXE8_MOUSE/396-605; Angiomotin C terminal
17-178 -9.810 15  PF05308.6; FA54A_MOUSE/38-299; Mitochondrial fission regulator
SCOP175 2-48 -5.560 17  d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
31 sp|O43827|ANGL7_HUMAN(removed signalp:1-26) Angiopoietin-related protein 7 OS=Homo sapiens GN=ANGPTL7 PE=1 SV=1 320 COG0113 1-319 -86.100 32  [R] KOG2579 Ficolin and related extracellular proteins
PDB0113 30-316 -99.600 33  1lwu_B mol:protein length:323 Fibrinogen beta chain
60-320 -104.000 41  1jc9_A mol:protein length:269 techylectin-5A
101-318 -105.000 44  1z3u_A mol:protein length:217 Angiopoietin-2
PfamA26U 102-316 -99.200 41  PF00147.13; TENA_CHICK/1587-1796; Fibrinogen beta and gamma chains, C-terminal globular domain
SCOP175 102-318 -103.000 48  d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
32 sp|Q8N6D5|ANR29_HUMAN Ankyrin repeat domain-containing protein 29 OS=Homo sapiens GN=ANKRD29 PE=2 SV=2 301 COG0113 20-297 -69.600 17  [I] KOG0817 Acyl-CoA-binding protein
36-265 -75.800 27  [O] KOG4412 26S proteasome regulatory complex, subunit PSMD10
PDB0113 1-301 -79.900 27  3utm_A mol:protein length:351 Tankyrase-1
36-268 -83.700 26  3b7b_A mol:protein length:237 Euchromatic histone-lysine N-methyltransferas
PfamA26U 50-241 -53.700 19  PF12796.2; A3YC40_9GAMM/544-718; Ankyrin repeats (3 copies)
242-274 -14.400 24  PF00023.25; GLP1_CAEEL/1107-1139; Ankyrin repeat
SCOP175 1-301 -78.200 29  d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
33 sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1 157 COG0113 1-157 -77.900 70  [U] KOG0934 Clathrin adaptor complex, small subunit
PDB0113 1-157 -79.700 87  1w63_Q mol:protein length:158 ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SU
PfamA26U 1-139 -60.600 18  PF01217.15; COPZ1_BOVIN/12-153; Clathrin adaptor complex small chain
SCOP175 1-141 -71.400 46  d1gw5s_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
34 sp|Q6Q788|APOA5_HUMAN(removed signalp:1-23) Apolipoprotein A-V OS=Homo sapiens GN=APOA5 PE=1 SV=1 343 COG0113 1-338 -11.700 12  [M] COG3264 Small-conductance mechanosensitive channel
26-290 -18.000 [S] KOG4744 Uncharacterized conserved protein
59-330 -15.000 [R] KOG4331 Polytopic membrane protein Prominin
PDB0113 12-312 -23.000 13  2l7b_A mol:protein length:307 Apolipoprotein E
55-334 -26.400 25  3s84_A mol:protein length:273 Apolipoprotein A-IV
PfamA26U 9-334 -21.200 PF07902.6; Q1CPP5_STRPB/1-621; gp58-like protein
31-285 -28.200 27  PF01442.13; APOA4_BOVIN/60-323; Apolipoprotein A1/A4/E domain
SCOP175 96-239 -18.700 14  d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
35 sp|P15514|AREG_HUMAN(removed signalp:1-26) Amphiregulin OS=Homo sapiens GN=AREG PE=1 SV=2 226 COG0113 4-158 -13.200 13  [R] COG5063 CCCH-type Zn-finger protein
119-225 -10.300 12  [S] COG5349 Uncharacterized protein conserved in bacteria
PDB0113 1-156 -15.400 14  2ddu_A mol:protein length:387 reelin
49-164 -16.100 4fbr_A mol:protein length:267 Myxobacterial hemagglutinin
81-157 -17.100 13  4aqs_A mol:protein length:525 LAMININ SUBUNIT BETA-1
118-159 -24.000 50  1xdt_R mol:protein length:79 HEPARIN-BINDING EPIDERMAL GROWTH FACTOR
130-226 -9.530 1bii_A mol:protein length:365 MHC CLASS I H-2DD
PfamA26U 84-174 -14.700 13  PF06247.6; Q968Z9_9APIC/23-221; Plasmodium ookinete surface protein Pvs28
119-224 -12.800 11  PF13908.1; Q6DC69_DANRE/23-231; Wnt and FGF inhibitory regulator
SCOP175 115-162 -19.800 27  d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}
36 sp|Q8N8L6|ARL10_HUMAN(removed signalp:1-21) ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1 223 COG0113 40-220 -78.700 30  [U] KOG0070 GTP-binding ADP-ribosylation factor Arf1
PDB0113 40-220 -78.600 30  3aq4_A mol:protein length:184 ADP-ribosylation factor 1
PfamA26U 53-217 -74.800 33  PF00025.16; TRI23_RAT/390-564; ADP-ribosylation factor family
SCOP175 12-209 -9.550 12  d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
55-218 -75.200 28  d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}
37 sp|Q8TBH0|ARRD2_HUMAN Arrestin domain-containing protein 2 OS=Homo sapiens GN=ARRDC2 PE=2 SV=2 407 COG0113 1-406 -94.100 52  [R] KOG3780 Thioredoxin binding protein TBP-2/VDUP1
PDB0113 2-349 -65.700 16  3gc3_A mol:protein length:385 Beta-arrestin-1
2-390 -62.300 14  1jsy_A mol:protein length:418 Bovine arrestin-2 (full length)
PfamA26U 4-290 -61.100 12  PF03643.10; VP26A_HUMAN/8-283; Vacuolar protein sorting-associated protein 26
SCOP175 2-152 -14.700 15  d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
164-335 -33.400 16  d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
38 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 1-300) 300 COG0113 16-300 -7.390 10  [O] KOG0802 E3 ubiquitin ligase
PDB0113 7-113 -6.390 14  2nvu_C mol:protein length:180 NEDD8-conjugating enzyme Ubc12
PfamA26U 3-114 -7.360 PF04092.8; Q95NL6_TOXGO/64-215; SRS domain
SCOP175 1-104 -6.850 d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
39 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 151-450) 300 COG0113 22-299 -8.760 [R] KOG0562 Predicted hydrolase (HIT family)
PDB0113 1-73 -5.840 2od0_A mol:protein length:105 Hypothetical protein VP1028
PfamA26U 1-75 -6.640 PF04767.7; Q77GE1_LSDV/8-104; DNA-binding 11 kDa phosphoprotein
SCOP175 1-73 -5.840 d2od0a1 d.198.5.2 (A:3-105) Hypothetical protein VP1028 {Vibrio parahaemolyticus [TaxId: 670]}
40 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 301-600) 300 COG0113 106-274 -6.820 13  [W] KOG4291 Mucin/alpha-tectorin
PDB0113 241-281 -6.230 22  3n41_A mol:protein length:65 E3 envelope glycoprotein
PfamA26U 4-60 -7.120 17  PF10260.4; Q7QKP9_ANOGA/119-189; Uncharacterized conserved domain (SAYSvFN)
SCOP175 215-271 -5.670 15  d2g81i1 g.3.13.1 (I:17-72) Bowman-Birk inhibitor, BBI {Cowpea (Vigna unguiculata) [TaxId: 3917]}


FFAS is supported by the NIH grant R01-GM087218-01
6 0 5 5 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]