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Results: 21-40 of 55674< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 601-900) 300 COG1214 1-300 -17.300 42  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)
H.sapiens 10-300 -109.000 45  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 301-600)
HGM_OVER 35-136 -4.150 10  HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;
JCSG1214 26-135 -5.890 11  SP18524A ZP_03312486.1 410586 Purified-2010-09-29
NEW_HUMAN_DOMAINS 39-146 -5.370 18  sp|Q96BY7|ATG2B_HUMAN Autophagy-related protein 2 homolog B OS=Homo sapiens GN=ATG2B PE=1 SV=5 (Range: 1054-1145)
PDB1214 5-135 -10.700 16  1u5e_A mol:protein length:211 Src-associated adaptor protein
74-300 -35.200 93  2rlo_A mol:protein length:128 Centaurin-gamma 1
PfamA27U 33-135 -10.800 10  PF00373.13; Q4T8R8_TETNG/88-414; FERM central domain
80-116 -12.200 25  PF15413.1; E9C7L7_CAPO3/130-226; Pleckstrin homology domain
SCOP175 5-135 -10.900 16  d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}
77-116 -12.800 23  d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-135 -5.270 11  VFG1219 (gi:15600234) pilP - type 4 fimbrial biogenesis protein PilP [Pseudomonas aeruginosa PAO1] (VF0082)
22 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 751-1050) 300 COG1214 1-300 -71.800 42  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)
H.sapiens 30-300 -92.200 47  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 451-750)
HGM_OVER 115-287 -5.740 13  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]
JCSG1214 3-170 -19.600 KN.B21276A.APPL1 BC028599 429652 Purified-2014-04-01
NEW_HUMAN_DOMAINS 153-227 -6.780 17  sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 (Range: 553-630)
PDB1214 1-169 -20.000 11  4h8s_A mol:protein length:407 DCC-interacting protein 13-beta
58-173 -20.500 15  2da0_A mol:protein length:114 130-kDa phosphatidylinositol 4,5-biphosphate-
153-300 -69.500 36  3t9k_A mol:protein length:390 Arf-GAP with coiled-coil, ANK repeat and PH d
PfamA27U 69-158 -12.800 PF15413.1; E9C7L7_CAPO3/130-226; Pleckstrin homology domain
181-297 -58.900 40  PF01412.13; Q1RQ02_CIOIN/430-546; Putative GTPase activating protein for Arf
SCOP175 19-172 -9.840 12  d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}
49-186 -13.900 10  d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}
60-158 -19.000 13  d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
180-296 -58.200 41  d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 153-280 -7.670 11  VFG1843 (gi:52840700) icmJ - IcmJ (DotN) [Legionella pneumophila Philadelphia 1] (VF0156)
23 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 901-1192) 292 COG1214 1-252 -84.200 59  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)
37-290 -85.100 28  [T] KOG0818 GTPase-activating proteins of the GIT family
H.sapiens 6-280 -103.000 57  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 601-875)
HGM_OVER 5-72 -4.300 11  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
JCSG1214 32-269 -17.500 16  CH2417A Q9BZL4 400611 Selected-2009-01-06
89-281 -19.200 20  KN.B2417A.BCL3 BC064993 429705 Purified-2014-04-10
134-286 -19.900 21  SP18983A NP_253302.1 413233 Purified-2010-05-11
NEW_HUMAN_DOMAINS 191-254 -10.500 17  tr|C9JBQ0|C9JBQ0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABTB1 PE=4 SV=1 (Range: 1-104)
PDB1214 27-291 -91.100 28  1dcq_A mol:protein length:278 PYK2-ASSOCIATED PROTEIN BETA
PfamA27U 31-147 -60.700 40  PF01412.13; Q1RQ02_CIOIN/430-546; Putative GTPase activating protein for Arf
96-254 -14.700 12  PF12796.2; A3YC40_9GAMM/544-718; Ankyrin repeats (3 copies)
SCOP175 4-247 -16.100 14  d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}
30-146 -60.500 41  d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
158-291 -22.700 17  d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 3-130 -8.550 11  VFG1843 (gi:52840700) icmJ - IcmJ (DotN) [Legionella pneumophila Philadelphia 1] (VF0156)
24 sp|P52895|AK1C2_HUMAN Aldo-keto reductase family 1 member C2 OS=Homo sapiens GN=AKR1C2 PE=1 SV=3 323 COG1214 5-323 -129.000 48  [R] KOG1577 Aldo/keto reductase family proteins
H.sapiens 1-323 -134.000 97  sp|Q04828|AK1C1_HUMAN Aldo-keto reductase family 1 member C1 OS=Homo sapiens GN=AKR1C1 PE=1 SV=1
HGM_OVER 148-297 -4.660 13  PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
JCSG1214 1-323 -134.000 100  MA0313U NP_001345.1 400197 Cloned-2009-02-26
NEW_HUMAN_DOMAINS 102-191 -4.820 15  sp|A6NFU0|F187A_HUMAN Ig-like V-type domain-containing protein FAM187A OS=Homo sapiens GN=FAM187A PE=3 SV=1 (Range: 142-237)
PDB1214 1-323 -133.000 97  1mrq_A mol:protein length:323 Aldo-keto reductase family 1 member C1
PfamA27U 18-299 -34.700 23  PF00248.16; A6F7D1_9GAMM/12-313; Aldo/keto reductase family
SCOP175 5-321 -128.000 48  d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]}
VFDB 37-304 -6.070 12  VFG1866 (gi:52841515) rpoS - stationary phase specific sigma factor RpoS [Legionella pneumophila Philadelphia 1] (VF0166)
25 sp|P05062|ALDOB_HUMAN Fructose-bisphosphate aldolase B OS=Homo sapiens GN=ALDOB PE=1 SV=2 364 COG1214 1-364 -127.000 69  [G] KOG1557 Fructose-biphosphate aldolase
H.sapiens 1-364 -127.000 69  sp|P04075|ALDOA_HUMAN Fructose-bisphosphate aldolase A OS=Homo sapiens GN=ALDOA PE=1 SV=2
HGM_OVER 35-161 -2.970 15  HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;
JCSG1214 15-179 -5.470 17  SP18830A NP_815944.1 410829 Purified-2010-09-29
NEW_HUMAN_DOMAINS 190-297 -5.460 14  sp|Q9NVU7|SDA1_HUMAN Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=3 (Range: 297-408)
PDB1214 2-364 -128.000 69  1j4e_A mol:protein length:363 FRUCTOSE-BISPHOSPHATE ALDOLASE A
PfamA27U 15-364 -126.000 59  PF00274.14; Q9GPK1_HETGL/19-366; Fructose-bisphosphate aldolase class-I
SCOP175 1-348 -119.000 47  d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
VFDB 226-289 -5.530 18  VFG1832 (gi:52840688) icmR - IcmR [Legionella pneumophila Philadelphia 1] (VF0156)
26 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 1-300) 300 COG1214 8-300 -13.500 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
H.sapiens 1-214 -72.600 43  sp|Q8IY63|AMOL1_HUMAN Angiomotin-like protein 1 OS=Homo sapiens GN=AMOTL1 PE=1 SV=1 (Range: 1-300)
1-267 -67.100 37  sp|Q4VCS5|AMOT_HUMAN Angiomotin OS=Homo sapiens GN=AMOT PE=1 SV=1 (Range: 1-300)
151-300 -23.200 100  sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 151-450)
HGM_OVER 7-71 -5.310 13  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
JCSG1214 1-221 -82.900 89  RF20594A.AMOTL2 BC027824 421189 Purified-2011-03-11
1-300 -14.100 11  SP17586C NP_439153.1 411588 Selected-2009-11-12
NEW_HUMAN_DOMAINS 1-71 -5.100 12  sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3 (Range: 708-906)
PDB1214 2-164 -7.560 10  4lde_A mol:protein length:469 Lysozyme, Beta-2 adrenergic receptor
PfamA27U 108-295 -8.450 PF05934.6; CLCC1_HUMAN/3-551; Mid-1-related chloride channel (MCLC)
SCOP175 4-63 -5.950 10  d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
VFDB 1-300 -14.100 11  VFG0337 (gi:16272928) iga - immunoglobin A1 protease [Haemophilus influenzae Rd] (VF0045)
27 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 151-450) 300 COG1214 3-205 -11.000 [O] KOG0802 E3 ubiquitin ligase
98-300 -13.700 10  [UD] KOG2218 ER to golgi transport protein/RAD50-interacting protein 1
166-300 -17.200 10  [U] KOG4324 Guanine nucleotide exchange factor
H.sapiens 1-246 -34.100 20  sp|Q4VCS5|AMOT_HUMAN Angiomotin OS=Homo sapiens GN=AMOT PE=1 SV=1 (Range: 151-450)
165-300 -27.000 49  sp|Q4VCS5|AMOT_HUMAN Angiomotin OS=Homo sapiens GN=AMOT PE=1 SV=1 (Range: 301-600)
HGM_OVER 187-300 -9.330 12  PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
JCSG1214 1-300 -37.800 82  RF20594A.AMOTL2 BC027824 421189 Purified-2011-03-11
NEW_HUMAN_DOMAINS 172-300 -13.400 10  sp|Q68CZ6|HAUS3_HUMAN HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1 SV=1 (Range: 442-603)
PDB1214 161-300 -16.100 1jch_A mol:protein length:551 COLICIN E3
PfamA27U 1-300 -13.200 13  PF08549.5; Q4WMY0_ASPFU/1-664; Fungal domain of unknown function (DUF1750 topsan)
165-300 -17.400 12  PF04111.7; E2AG92_CAMFO/109-426; Autophagy protein Apg6
SCOP175 172-298 -13.700 16  d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-300 -16.700 VFG0337 (gi:16272928) iga - immunoglobin A1 protease [Haemophilus influenzae Rd] (VF0045)
28 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 301-600) 300 COG1214 1-293 -24.500 10  [S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain
H.sapiens 1-300 -28.200 13  sp|Q9Y250|LZTS1_HUMAN Leucine zipper putative tumor suppressor 1 OS=Homo sapiens GN=LZTS1 PE=1 SV=3
HGM_OVER 35-170 -5.860 PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
JCSG1214 1-300 -28.500 92  RF20594A.AMOTL2 BC027824 421189 Purified-2011-03-11
NEW_HUMAN_DOMAINS 2-68 -8.130 19  tr|B5MDG7|B5MDG7_HUMAN Uncharacterized protein OS=Homo sapiens GN=HMG20B PE=4 SV=2 (Range: 199-286)
PDB1214 2-296 -23.800 10  1c1g_A mol:protein length:284 TROPOMYOSIN
PfamA27U 2-294 -21.100 PF15905; D2HVU4.1/1-326; Hyaluronan mediated motility receptor N-terminal
SCOP175 17-186 -8.160 d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 1-300 -21.400 15  VFG0950 (gi:21911263) emm3 - M protein type 3 [Streptococcus pyogenes (serotype M3) MGAS315] (VF0242)
29 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 451-750) 300 COG1214 2-202 -20.800 12  [S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain
H.sapiens 28-220 -27.000 61  sp|Q8IY63|AMOL1_HUMAN Angiomotin-like protein 1 OS=Homo sapiens GN=AMOTL1 PE=1 SV=1 (Range: 601-900)
162-297 -30.200 100  sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 601-779)
HGM_OVER 1-200 -9.700 PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
JCSG1214 1-297 -27.800 80  RF20594A.AMOTL2 BC027824 421189 Purified-2011-03-11
NEW_HUMAN_DOMAINS 231-300 -10.300 tr|Q6ZR73|Q6ZR73_HUMAN Phospholipid scramblase 4, isoform CRA_a OS=Homo sapiens GN=PLSCR4 PE=2 SV=1 (Range: 21-98)
PDB1214 1-209 -17.700 1jch_A mol:protein length:551 COLICIN E3
206-300 -15.700 12  4dt5_A mol:protein length:143 Antifreeze protein
PfamA27U 3-209 -18.200 13  PF00261.15; Q805C4_TAKRU/12-248; Tropomyosin
33-209 -25.200 62  PF12240.3; B1AXE8_MOUSE/396-605; Angiomotin C terminal
219-300 -13.700 17  PF06346.7; DIAP1_MOUSE/589-747; Formin Homology Region 1
SCOP175 1-189 -10.600 11  d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 1-296 -19.400 12  VFG0337 (gi:16272928) iga - immunoglobin A1 protease [Haemophilus influenzae Rd] (VF0045)
30 sp|Q9Y2J4|AMOL2_HUMAN Angiomotin-like protein 2 OS=Homo sapiens GN=AMOTL2 PE=1 SV=3 (Range: 601-779) 179 COG1214 2-179 -8.630 [K] COG5414 TATA-binding protein-associated factor
H.sapiens 25-179 -42.000 35  sp|Q8IY63|AMOL1_HUMAN Angiomotin-like protein 1 OS=Homo sapiens GN=AMOTL1 PE=1 SV=1 (Range: 751-956)
HGM_OVER 6-62 -5.150 24  HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;
JCSG1214 6-179 -28.600 73  RF20594A.AMOTL2 BC027824 421189 Purified-2011-03-11
NEW_HUMAN_DOMAINS 13-47 -7.650 25  sp|Q5T124|UBX11_HUMAN UBX domain-containing protein 11 OS=Homo sapiens GN=UBXN11 PE=2 SV=2 (Range: 27-108)
PDB1214 9-52 -7.430 22  1zxa_A mol:protein length:67 cGMP-dependent protein kinase 1, alpha isozym
PfamA27U 12-88 -13.900 48  PF12240.3; B1AXE8_MOUSE/396-605; Angiomotin C terminal
SCOP175 17-68 -5.840 d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]}
VFDB 9-71 -5.310 12  VFG2263 (gi:49476225) trwJ2 - trwJ2 protein [Bartonella henselae Houston-1] (VF0372)
31 sp|O43827|ANGL7_HUMAN(removed signalp:1-26) Angiopoietin-related protein 7 OS=Homo sapiens GN=ANGPTL7 PE=1 SV=1 320 COG1214 1-319 -88.400 30  [R] KOG2579 Ficolin and related extracellular proteins
H.sapiens 1-318 -98.700 37  sp|Q9Y264|ANGP4_HUMAN(removed signalp:1-22) Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1
HGM_OVER 141-250 -4.430 17  PB045813 Q5LF03_BACFN/1-275 PB045813; Pfam-B_45813;
JCSG1214 48-317 -47.100 15  SP17431A ZP_02043376.1 406558 Selected-2009-11-12
NEW_HUMAN_DOMAINS 122-265 -5.430 11  sp|Q12836|ZP4_HUMAN Zona pellucida sperm-binding protein 4 OS=Homo sapiens GN=ZP4 PE=2 SV=1 (Range: 20-134)
PDB1214 1-318 -92.900 33  1ei3_B mol:protein length:464 FIBRINOGEN
94-320 -100.000 42  4jyo_X mol:protein length:230 Angiopoietin-1
PfamA27U 102-316 -93.000 41  PF00147.13; TENA_CHICK/1587-1796; Fibrinogen beta and gamma chains, C-terminal globular domain
SCOP175 102-318 -97.400 48  d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
VFDB 110-311 -6.260 11  VFG0083 (gi:15640837) tagA - ToxR-activated gene A protein [Vibrio cholerae N16961]
32 sp|Q8N6D5|ANR29_HUMAN Ankyrin repeat domain-containing protein 29 OS=Homo sapiens GN=ANKRD29 PE=2 SV=2 301 COG1214 1-301 -70.800 16  [R] KOG0508 Ankyrin repeat protein
36-265 -74.700 27  [O] KOG4412 26S proteasome regulatory complex, subunit PSMD10
H.sapiens 4-301 -92.700 30  sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3 (Range: 301-600)
HGM_OVER 109-258 -2.050 10  PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)
JCSG1214 1-300 -77.500 21  RF.A2417A.NOTCH1 BC138441 424711 Purified-2012-02-21
NEW_HUMAN_DOMAINS 112-219 -23.800 23  tr|C9JBQ0|C9JBQ0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABTB1 PE=4 SV=1 (Range: 1-104)
PDB1214 1-301 -84.600 26  4rly_A mol:protein length:329 Nav1.2 - AnkB chimera
PfamA27U 50-241 -48.600 20  PF12796.2; A3YC40_9GAMM/544-718; Ankyrin repeats (3 copies)
SCOP175 1-301 -79.000 29  d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
VFDB 19-286 -9.270 12  VFG1883 (gi:52842845) enhC - enhanced entry protein EnhC [Legionella pneumophila Philadelphia 1] (VF0163)
33 sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1 157 COG1214 1-153 -84.200 71  [U] KOG0934 Clathrin adaptor complex, small subunit
H.sapiens 1-157 -86.800 87  sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1
HGM_OVER 64-154 -4.240 15  PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
JCSG1214 71-154 -5.890 10  RH20328A ZP_02422010.1 416056 Selected-2009-12-04
NEW_HUMAN_DOMAINS 79-137 -7.200 13  sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3 (Range: 1684-1756)
PDB1214 1-157 -86.800 87  1w63_Q mol:protein length:158 ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SU
PfamA27U 1-139 -59.000 18  PF01217.15; COPZ1_BOVIN/12-153; Clathrin adaptor complex small chain
SCOP175 1-141 -79.500 46  d1gw5s_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 57-116 -5.030 16  VFG0818 (gi:15804235) Z5125 - - [Escherichia coli O157:H7 EDL933]
34 sp|Q6Q788|APOA5_HUMAN(removed signalp:1-23) Apolipoprotein A-V OS=Homo sapiens GN=APOA5 PE=1 SV=1 343 COG1214 20-292 -16.200 11  [YU] KOG4460 Nuclear pore complex, Nup88/rNup84 component
77-342 -18.000 [S] KOG4744 Uncharacterized conserved protein
H.sapiens 1-342 -27.500 25  sp|P06727|APOA4_HUMAN(removed signalp:1-20) Apolipoprotein A-IV OS=Homo sapiens GN=APOA4 PE=1 SV=3
HGM_OVER 34-189 -4.960 11  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
JCSG1214 1-342 -22.600 11  CC20746A NP_420296.1 423187 Purified-2011-04-15
NEW_HUMAN_DOMAINS 6-342 -12.000 11  sp|Q9P1Z9|CI174_HUMAN Uncharacterized protein C9orf174 OS=Homo sapiens GN=C9orf174 PE=1 SV=2 (Range: 319-675)
PDB1214 1-312 -24.200 13  2l7b_A mol:protein length:307 Apolipoprotein E
55-315 -30.000 26  3s84_A mol:protein length:273 Apolipoprotein A-IV
PfamA27U 1-342 -16.000 11  PF13779.1; A9D7X3_9RHIZ/37-855; Domain of unknown function (DUF4175 topsan)
31-296 -31.400 25  PF01442.13; APOA4_BOVIN/60-323; Apolipoprotein A1/A4/E domain
SCOP175 96-239 -21.200 14  d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
VFDB 2-342 -21.700 VFG1097 (gi:15641767) VC1764 - hypothetical protein [Vibrio cholerae N16961]
35 sp|P15514|AREG_HUMAN(removed signalp:1-26) Amphiregulin OS=Homo sapiens GN=AREG PE=1 SV=2 226 COG1214 71-193 -10.200 13  [O] KOG1734 Predicted RING-containing E3 ubiquitin ligase
120-158 -12.900 30  [R] COG5063 CCCH-type Zn-finger protein
126-226 -11.900 11  [S] COG4640 Predicted membrane protein
H.sapiens 6-226 -42.300 13  sp|P56975|NRG3_HUMAN Pro-neuregulin-3, membrane-bound isoform OS=Homo sapiens GN=NRG3 PE=1 SV=1 (Range: 151-450)
42-221 -47.500 24  sp|Q99075|HBEGF_HUMAN(removed signalp:1-23) Proheparin-binding EGF-like growth factor OS=Homo sapiens GN=HBEGF PE=1 SV=1
HGM_OVER 88-156 -5.110 11  HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
JCSG1214 120-157 -11.900 26  HN13881A NM_016256.3 423397 Cloned-2013-04-04
143-226 -10.400 TM0975 TM0975 282844 Purified-2001-12-12
NEW_HUMAN_DOMAINS 117-161 -12.700 28  sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=2 (Range: 4293-4391)
128-201 -11.400 14  tr|E9PFX4|E9PFX4_HUMAN Uncharacterized protein OS=Homo sapiens GN=LTK PE=4 SV=1 (Range: 276-395)
PDB1214 25-159 -15.500 4cbz_A mol:protein length:312 PROTEIN JAGGED-1
86-159 -27.900 35  1xdt_R mol:protein length:79 HEPARIN-BINDING EPIDERMAL GROWTH FACTOR
118-226 -11.200 11  3asi_A mol:protein length:410 Neurexin-1-alpha
PfamA27U 10-157 -11.800 14  PF15550.1; G3W7G3_SARHA/34-338; Draxin
119-224 -12.800 11  PF13908.1; Q6DC69_DANRE/23-231; Wnt and FGF inhibitory regulator
SCOP175 115-162 -22.300 27  d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}
VFDB 166-226 -7.480 VFG1209 (gi:15599749) pilX - type 4 fimbrial biogenesis protein PilX [Pseudomonas aeruginosa PAO1] (VF0082)
36 sp|Q8N8L6|ARL10_HUMAN(removed signalp:1-21) ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1 223 COG1214 8-171 -13.800 13  [R] COG1163 Predicted GTPase
40-220 -80.000 30  [U] KOG0070 GTP-binding ADP-ribosylation factor Arf1
H.sapiens 40-223 -80.200 34  sp|Q6T311|ARL9_HUMAN ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1
HGM_OVER 13-167 -5.960 11  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
JCSG1214 16-223 -10.300 15  NS0527C SSUI_28JUL04_CONTIG260_REVISED_GENE1372 380634 Purified-2007-10-29
58-220 -31.100 14  KN.B21262A.RAN BC004272 429589 Purified-2014-04-01
NEW_HUMAN_DOMAINS 44-182 -7.690 10  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB1214 38-220 -79.900 30  3aq4_A mol:protein length:184 ADP-ribosylation factor 1
PfamA27U 45-217 -76.600 32  PF00025.16; TRI23_RAT/390-564; ADP-ribosylation factor family
SCOP175 57-217 -75.000 34  d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}
VFDB 54-217 -18.600 14  VFG1062 (gi:15808742) orf46 - unknown [Shigella flexneri (serotype 2a) YSH6000]
37 sp|Q8TBH0|ARRD2_HUMAN Arrestin domain-containing protein 2 OS=Homo sapiens GN=ARRDC2 PE=2 SV=2 407 COG1214 1-406 -93.200 53  [R] KOG3780 Thioredoxin binding protein TBP-2/VDUP1
H.sapiens 2-405 -93.200 44  sp|Q8NCT1|ARRD4_HUMAN Arrestin domain-containing protein 4 OS=Homo sapiens GN=ARRDC4 PE=1 SV=3
HGM_OVER 179-300 -5.890 HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
JCSG1214 20-300 -7.890 SP18688A ZP_01996993.1 410714 Selected-2009-11-12
NEW_HUMAN_DOMAINS 6-71 -5.180 13  sp|Q6BDS2|URFB1_HUMAN UHRF1-binding protein 1 OS=Homo sapiens GN=UHRF1BP1 PE=1 SV=1 (Range: 309-398)
PDB1214 2-322 -88.300 36  4ll1_A mol:protein length:315 Thioredoxin-interacting protein
3-375 -62.800 14  1jsy_A mol:protein length:418 Bovine arrestin-2 (full length)
PfamA27U 4-290 -56.700 13  PF03643.10; VP26A_HUMAN/8-283; Vacuolar protein sorting-associated protein 26
SCOP175 28-152 -10.200 16  d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
164-337 -32.000 15  d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
VFDB 5-129 -5.810 VFG0901 (gi:26250987) papG_2 - PapG protein [Escherichia coli CFT073] (VF0220)
38 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 1-300) 300 COG1214 12-287 -14.300 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
H.sapiens 1-272 -68.000 28  sp|Q9Y6X0|SETBP_HUMAN SET-binding protein OS=Homo sapiens GN=SETBP1 PE=1 SV=3 (Range: 1-300)
HGM_OVER 1-116 -6.490 12  HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;
JCSG1214 13-296 -17.900 SP17586C NP_439153.1 411588 Selected-2009-11-12
NEW_HUMAN_DOMAINS 66-112 -6.300 21  sp|Q96A73|K1191_HUMAN UPF0498 protein KIAA1191 OS=Homo sapiens GN=KIAA1191 PE=1 SV=1 (Range: 1-60)
PDB1214 157-266 -7.350 4rco_A mol:protein length:295 Putative uncharacterized protein
PfamA27U 118-297 -9.490 PF05934.6; CLCC1_HUMAN/3-551; Mid-1-related chloride channel (MCLC)
SCOP175 61-109 -4.760 14  d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon Haloarcula marismortui [TaxId: 2238]}
VFDB 13-296 -17.900 VFG0337 (gi:16272928) iga - immunoglobin A1 protease [Haemophilus influenzae Rd] (VF0045)
39 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 151-450) 300 COG1214 1-285 -13.500 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
H.sapiens 1-149 -23.300 100  sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 1-300)
151-300 -35.200 100  sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 301-600)
HGM_OVER 4-68 -2.730 PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
JCSG1214 1-96 -11.700 SP16857B ZP_02035441.1 407193 Purified-2010-09-29
94-299 -11.200 20  GS13560C YP_211519.1 385185 Purified-2010-09-29
95-219 -11.200 NN16152B NP_460115.1 400917 Cloned-2009-07-10
NEW_HUMAN_DOMAINS 1-34 -7.620 14  sp|Q8N7X0|CAN7L_HUMAN Calpain-7-like protein OS=Homo sapiens GN=C6orf103 PE=2 SV=3 (Range: 841-907)
PDB1214 5-96 -10.200 4rco_A mol:protein length:295 Putative uncharacterized protein
PfamA27U 1-96 -8.910 PF05104.7; Q6GNE7_XENLA/33-176; Ribosome receptor lysine/proline rich region
SCOP175 1-57 -5.150 d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 95-219 -11.200 VFG0458 (gi:16764500) csgA - curlin major subunit, coiled surface structures; cryptic [Salmonella enterica (serovar typhimurium) LT2] (VF0103)
40 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 301-600) 300 COG1214 157-299 -4.770 11  [T] KOG3884 Neural proliferation, differentiation and control protein
H.sapiens 1-150 -35.200 100  sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 151-450)
151-299 -32.800 100  sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 451-750)
HGM_OVER 97-265 -1.690 18  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
JCSG1214 148-300 -6.360 11  SP2363A YP_211281.1 407957 Purified-2010-09-29
NEW_HUMAN_DOMAINS 147-248 -5.810 12  sp|Q8TB69|ZN519_HUMAN Zinc finger protein 519 OS=Homo sapiens GN=ZNF519 PE=2 SV=2 (Range: 44-148)
PDB1214 147-185 -5.120 10  2jpc_A mol:protein length:61 SsrB
PfamA27U 147-298 -5.980 PF08690.5; GET2_CANAW/10-296; GET complex subunit GET2
SCOP175 147-186 -3.970 15  d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
VFDB 97-186 -5.720 11  VFG0451 (gi:16763932) fimW - putative fimbrial protein [Salmonella enterica (serovar typhimurium) LT2] (VF0102)


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.