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# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG0865 aap/aspU - Dispersin [Escherichia coli 17-2] (VF0215) 116 COG0614 1-87 -7.240 10  [S] COG3495 Uncharacterized protein conserved in bacteria
H.sapiens 12-116 -7.190 13  sp|P49619|DGKG_HUMAN Diacylglycerol kinase gamma OS=Homo sapiens GN=DGKG PE=2 SV=3 (Range: 601-791)
HGM_OVER 1-116 -8.200 17  PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;
NEW_HUMAN_DOMAINS 29-61 -5.650 24  sp|Q96BN6|F149B_HUMAN Protein FAM149B1 OS=Homo sapiens GN=FAM149B1 PE=2 SV=2 (Range: 219-293)
PDB0614 22-115 -46.500 95  2jvu_A mol:protein length:104 DISPERSIN
PfamA27U 29-116 -7.840 PF16649; G7PIH8.1/28-184; Interleukin 23 subunit alpha
SCOP175 1-66 -6.980 16  d2jnaa1 d.230.6.1 (A:1-96) Hypothetical protein STM0082 {Salmonella typhimurium [TaxId: 90371]}
VFDB 1-63 -7.490 20  VFG0435 (gi:17233483) pefA - plasmid-encoded fimbriae; major fimbrial subunit [Salmonella enterica (serovar typhimurium) LT2] (VF0104)
2 VFG2285 (gi:110800384) nanH - sialidase [Clostridium perfringens ATCC 13124] (VF0391) 382 COG0614 4-366 -49.900 21  [G] COG4409 Neuraminidase (sialidase)
H.sapiens 12-381 -69.100 20  sp|Q9UQ49|NEUR3_HUMAN Sialidase-3 OS=Homo sapiens GN=NEU3 PE=1 SV=1
HGM_OVER 1-370 -6.460 PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 184-237 -4.530 14  sp|Q9BSR8|YIPF4_HUMAN Protein YIPF4 OS=Homo sapiens GN=YIPF4 PE=1 SV=1 (Range: 1-82)
PDB0614 4-381 -82.500 32  1dil_A mol:protein length:381 SIALIDASE
PfamA27U 19-380 -14.700 PF15902; E3L285.1/823-1273; Sortilin, neurotensin receptor 3,
38-362 -44.600 19  PF13859.1; Q4E5U1_TRYCC/92-446; BNR repeat-like domain
SCOP175 4-381 -82.700 32  d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]}
VFDB 27-376 -77.100 24  VFG1378 (gi:15903579) nanA - Sialidase A precursor (neuraminidase A) [Streptococcus pneumoniae R6] (VF0148)
3 VFG2286 (gi:110801889) cpe - enterotoxin Cpe [Clostridium perfringens SM101] (VF0383) 319 COG0614 199-314 -6.220 11  [S] COG3502 Uncharacterized protein conserved in bacteria
H.sapiens 131-309 -6.870 10  sp|Q08462|ADCY2_HUMAN Adenylate cyclase type 2 OS=Homo sapiens GN=ADCY2 PE=1 SV=5 (Range: 901-1091)
HGM_OVER 209-317 -3.200 19  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
NEW_HUMAN_DOMAINS 231-319 -5.160 17  sp|A8K8P3|SFI1_HUMAN Protein SFI1 homolog OS=Homo sapiens GN=SFI1 PE=1 SV=2 (Range: 74-170)
PDB0614 1-319 -152.000 100  3am2_A mol:protein length:328 Heat-labile enterotoxin B chain
PfamA27U 54-240 -62.600 20  PF03505.9; Q45877_CLOBO/230-426; Clostridium enterotoxin
SCOP175 214-318 -7.140 18  d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}
VFDB 227-313 -5.630 19  VFG0283 (gi:15645149) cag4 - cag pathogenicity island protein [Helicobacter pylori 26695] (VF0060)
4 VFG1640 (gi:11322959) sfaC - SfaC protein [Escherichia coli 536] 73 COG0614 2-51 -21.000 26  [KG] COG1349 Transcriptional regulators of sugar metabolism
H.sapiens 1-73 -17.500 15  sp|P55265|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4 (Range: 151-450)
HGM_OVER 2-51 -9.410 18  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 1-47 -8.170 10  sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4 (Range: 1975-2052)
PDB0614 1-73 -32.400 90  2htj_A mol:protein length:81 P fimbrial regulatory protein KS71A
PfamA27U 1-61 -25.300 45  PF04703.7; Q9ADX3_ECOLX/1-62; FaeA-like protein
SCOP175 1-73 -33.500 90  d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
VFDB 1-73 -33.500 90  VFG0891 (gi:26250997) papI_2 - PapI protein [Escherichia coli CFT073] (VF0220)
5 VFG1643 (gi:11322961) sfaD - SfaD protein [Escherichia coli 536] 179 COG0614 31-151 -24.800 13  [NU] COG3539 P pilus assembly protein, pilin FimA
H.sapiens 31-178 -7.900 10  sp|Q9H5V8|CDCP1_HUMAN(removed signalp:1-29) CUB domain-containing protein 1 OS=Homo sapiens GN=CDCP1 PE=1 SV=3 (Range: 451-750)
HGM_OVER 1-177 -6.590 10  PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 36-156 -6.200 12  sp|Q9NS62|THSD1_HUMAN Thrombospondin type-1 domain-containing protein 1 OS=Homo sapiens GN=THSD1 PE=1 SV=1 (Range: 199-325)
PDB0614 28-178 -61.400 29  2jmr_A mol:protein length:179 fimF
PfamA27U 56-178 -40.600 21  PF16970; Q8GA68.1/52-183; Type-1 fimbrial protein, A
SCOP175 31-178 -56.600 19  d2j2zb1 b.2.3.2 (B:24-173) PAP fimbrial minor pilin protein PapH {Escherichia coli [TaxId: 562]}
VFDB 1-178 -78.900 55  VFG0874 (gi:26251202) fimI - Fimbrin-like protein fimI precursor [Escherichia coli CFT073] (VF0221)
6 VFG0772 (gi:11527908) espC - enterotoxin EspC [Escherichia coli E2348/69] (VF0173) 1305 COG0614 1-779 -14.100 12  [U] COG3210 Large exoproteins involved in heme utilization or adhesion
74-1305 -32.600 10  [S] COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain
443-1305 -77.400 15  [MU] COG3468 Type V secretory pathway, adhesin AidA
H.sapiens 79-295 -9.710 16  sp|Q9NZP8|C1RL_HUMAN(removed signalp:1-35) Complement C1r subcomponent-like protein OS=Homo sapiens GN=C1RL PE=1 SV=2
HGM_OVER 1-213 -4.250 11  PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;
NEW_HUMAN_DOMAINS 1-164 -5.120 10  sp|Q9UKL3|C8AP2_HUMAN CASP8-associated protein 2 OS=Homo sapiens GN=CASP8AP2 PE=1 SV=1 (Range: 1021-1151)
PDB0614 54-1028 -137.000 39  4om9_A mol:protein length:966 Serine protease pet
999-1305 -85.700 75  3slj_A mol:protein length:313 Serine protease espP
PfamA27U 45-717 -114.000 47  PF02395.11; ESPP_ECO57/47-730; Immunoglobulin A1 protease
1011-1305 -11.200 10  PF09381.5; Q1RC46_ECOUT/18-318; Outer membrane protein G (OmpG)
1046-1296 -28.800 13  PF03797.14; Q87E01_XYLFT/468-724; Autotransporter beta-domain
SCOP175 399-989 -13.300 11  d1daba_ b.80.1.7 (A:) Virulence factor P.69 pertactin {Bordetella pertussis [TaxId: 520]}
1016-1305 -37.000 15  d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}
VFDB 1-1305 -256.000 50  VFG0844 (gi:3822134) espP - putative exoprotein-precursor [Escherichia coli O157:H7 EDL933] (VF0208)
7 VFG0767 (gi:11527909) orf1 - unknown [Escherichia coli E2348/69] 66 COG0614 6-60 -5.860 16  [S] COG3140 Uncharacterized protein conserved in bacteria
H.sapiens 6-66 -6.050 18  sp|Q96LS8|CB048_HUMAN Uncharacterized protein C2orf48 OS=Homo sapiens GN=C2orf48 PE=2 SV=1
HGM_OVER 6-40 -2.840 11  HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;
NEW_HUMAN_DOMAINS 10-45 -6.350 19  sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2 (Range: 2505-2589)
PDB0614 2-65 -6.100 23  4bp0_A mol:protein length:250 METALLO-B-LACTAMASE
PfamA27U 2-38 -5.910 22  PF15184.1; B5XCF5_SALSA/1-66; Mitochondrial import receptor subunit TOM6 homolog
SCOP175 17-50 -5.860 17  d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]}
VFDB 1-60 -4.850 13  VFG2372 (gi:123443290) wzx - RfbX [Yersinia enterocolitica 8081] (VF0392)
8 VFG0770 (gi:11527910) orf2 - unknown [Escherichia coli E2348/69] 54 COG0614 10-44 -4.240 11  [U] COG4791 Type III secretory pathway, component EscT
H.sapiens 1-52 -5.200 17  sp|Q8WXX7|AUTS2_HUMAN Autism susceptibility gene 2 protein OS=Homo sapiens GN=AUTS2 PE=1 SV=1 (Range: 1051-1259)
HGM_OVER 9-35 -4.430 25  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
NEW_HUMAN_DOMAINS 1-54 -5.390 13  sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2 (Range: 196-303)
PDB0614 36-51 -6.320 43  3oak_C mol:protein length:31 Transcription elongation factor SPT6
PfamA27U 8-33 -5.390 23  PF06099.6; C6BL57_RALP1/10-69; Phenol hydroxylase subunit
SCOP175 16-34 -5.580 31  d1imta2 g.3.10.1 (A:37-80) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
VFDB 1-22 -6.300 VFG2421 (gi:21284070) sbi - IgG-binding protein SBI [Staphylococcus aureus MW2] (VF0423)
9 VFG0771 (gi:11527911) orf3 - unknown [Escherichia coli E2348/69] 390 COG0614 90-147 -7.010 17  [J] KOG3499 60S ribosomal protein L38
H.sapiens 78-337 -7.620 12  sp|Q7Z4V0|ZN438_HUMAN Zinc finger protein 438 OS=Homo sapiens GN=ZNF438 PE=2 SV=1 (Range: 601-828)
HGM_OVER 49-328 -2.470 10  PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;
NEW_HUMAN_DOMAINS 5-75 -4.940 20  sp|Q8WVM7|STAG1_HUMAN Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3 (Range: 465-536)
PDB0614 36-390 -146.000 44  3pcr_A mol:protein length:357 EspG
PfamA27U 9-390 -145.000 43  PF06872.6; Q5WMC0_ECOLX/15-397; EspG protein
SCOP175 163-228 -4.420 16  d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 9-390 -141.000 42  VFG0833 (gi:15804250) espG - EspG [Escherichia coli O157:H7 EDL933] (VF0201)
10 VFG0773 (gi:11527912) orf5 - unknown [Escherichia coli E2348/69] 57 COG0614 1-47 -6.660 14  [S] COG2155 Uncharacterized conserved protein
H.sapiens 18-57 -8.500 10  sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 (Range: 1351-1650)
HGM_OVER 27-57 -3.690 19  HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
NEW_HUMAN_DOMAINS 17-57 -9.510 24  sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 (Range: 1473-1541)
PDB0614 23-55 -6.910 12  2aj0_A mol:protein length:71 Probable cadmium-transporting ATPase
PfamA27U 1-57 -6.760 14  PF09679.5; Q4L1T4_SALCE/1-97; Type-F conjugative transfer system pilin chaperone (TraQ)
SCOP175 23-55 -6.480 18  d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 6-53 -5.070 39  VFG0905 (gi:26249404) hlyC - Hemolysin C [Escherichia coli CFT073] (VF0225)
11 VFG0777 (gi:11527914) orf6.2 - unknown [Escherichia coli E2348/69] 51 COG0614 3-48 -8.970 13  [L] COG3316 Transposase and inactivated derivatives
H.sapiens 1-50 -7.820 12  sp|P63136|POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1 (Range: 451-750)
HGM_OVER 11-46 -2.520 HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;
NEW_HUMAN_DOMAINS 13-46 -6.150 14  sp|Q5PRF9|SMAG2_HUMAN Protein Smaug homolog 2 OS=Homo sapiens GN=SAMD4B PE=1 SV=1 (Range: 1-54)
PDB0614 1-50 -8.750 12  3zcm_A mol:protein length:167 HIV INTEGRASE
PfamA27U 3-46 -8.910 15  PF13610.1; B5WJN4_9BURK/77-216; DDE domain
SCOP175 1-50 -8.440 12  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
VFDB 1-51 -21.100 78  VFG0081 (gi:15640835) VC0817 - transposase, putative [Vibrio cholerae N16961]
12 VFG0778 (gi:11527915) orf6.3 - unknown [Escherichia coli E2348/69] 46 COG0614 6-44 -4.340 12  [J] KOG3412 60S ribosomal protein L28
H.sapiens 9-35 -5.740 22  sp|Q6UX68|XKR5_HUMAN(removed signalp:1-53) XK-related protein 5 OS=Homo sapiens GN=XKR5 PE=2 SV=1 (Range: 451-633)
HGM_OVER 21-41 -4.080 PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;
NEW_HUMAN_DOMAINS 11-30 -5.400 25  tr|E9PAM4|E9PAM4_HUMAN Uncharacterized protein OS=Homo sapiens GN=PI4K2A PE=4 SV=1 (Range: 1-65)
PDB0614 6-44 -4.940 15  3j61_r mol:protein length:147 60S ribosomal protein L28E
PfamA27U 8-26 -6.540 15  PF12815.2; B6H820_PENCW/830-964; Spt5 C-terminal nonapeptide repeat binding Spt4
SCOP175 15-40 -3.600 23  d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
VFDB 1-46 -5.320 50  VFG0081 (gi:15640835) VC0817 - transposase, putative [Vibrio cholerae N16961]
13 VFG0780 (gi:11527916) orf7 - unknown [Escherichia coli E2348/69] 463 COG0614 1-344 -99.400 40  [L] COG4584 Transposase and inactivated derivatives
H.sapiens 1-238 -18.000 10  sp|P63133|POK6_HUMAN HERV-K_8p23.1 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1 (Range: 451-750)
2-375 -9.730 sp|Q53EQ6|TIGD5_HUMAN Tigger transposable element-derived protein 5 OS=Homo sapiens GN=TIGD5 PE=2 SV=2
81-299 -20.200 12  sp|Q9QC07|POK7_HUMAN HERV-K_1q23.3 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=2 (Range: 601-812)
HGM_OVER 206-281 -3.330 13  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
NEW_HUMAN_DOMAINS 4-85 -6.310 15  sp|Q9BWC9|CC106_HUMAN Coiled-coil domain-containing protein 106 OS=Homo sapiens GN=CCDC106 PE=1 SV=1 (Range: 181-280)
PDB0614 2-103 -16.900 14  2lvs_A mol:protein length:105 Putative uncharacterized protein
3-343 -14.800 14  4fcy_A mol:protein length:529 Transposase
68-299 -19.400 11  4fw2_A mol:protein length:270 Integrase
115-299 -20.300 11  4fw1_A mol:protein length:222 Integrase
120-244 -21.600 15  1cz9_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE
PfamA27U 1-111 -11.900 PF01710.11; P74627_SYNY3/1-120; Transposase
2-42 -12.100 26  PF11427.3; B4MU89_DROWI/3-52; Tc3 transposase
120-244 -16.500 16  PF00665.21; O89811_FLV/1485-1601; Integrase core domain
121-295 -11.300 14  PF02914.10; TRA_HAEIN/267-485; Bacteriophage Mu transposase
SCOP175 2-42 -12.300 14  d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
118-292 -15.300 15  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
120-244 -20.800 16  d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
VFDB 1-333 -104.000 90  VFG1514 (gi:24528043) s0035 - ORF A protein [Escherichia coli 536]
1-461 -74.400 11  VFG1728 (gi:26249442) c3607 - Hypothetical protein [Escherichia coli CFT073]
14 VFG0781 (gi:11527917) orf8 - unknown [Escherichia coli E2348/69] 83 COG0614 2-83 -10.500 20  [L] COG1484 DNA replication protein
H.sapiens 1-83 -6.580 17  sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=1 SV=1 (Range: 451-750)
HGM_OVER 6-66 -5.240 16  PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;
NEW_HUMAN_DOMAINS 1-80 -7.570 11  sp|Q86T24|KAISO_HUMAN Transcriptional regulator Kaiso OS=Homo sapiens GN=ZBTB33 PE=1 SV=2 (Range: 588-672)
PDB0614 2-81 -20.400 22  3ecc_A mol:protein length:185 DNA replication protein DnaC
PfamA27U 2-73 -46.300 35  PF01695.12; Y4IQ_RHISN/60-238; IstB-like ATP binding protein
SCOP175 22-73 -5.870 13  d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}
VFDB 1-83 -55.300 90  VFG1460 (gi:24527992) y1094 - ORF B protein [Escherichia coli 536]
15 VFG0776 (gi:11527918) orf6.1 - unknown [Escherichia coli E2348/69] 80 COG0614 1-75 -18.500 18  [L] COG2801 Transposase and inactivated derivatives
H.sapiens 4-62 -7.950 18  sp|Q3ZCU0|YK006_HUMAN Putative uncharacterized protein FLJ37770 OS=Homo sapiens PE=5 SV=1
HGM_OVER 5-50 -3.630 13  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
NEW_HUMAN_DOMAINS 9-52 -7.750 19  sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1 (Range: 374-430)
PDB0614 6-27 -6.800 13  2oa4_A mol:protein length:101 SiR5
PfamA27U 6-75 -29.400 20  PF13551.1; B2T8S8_BURPP/9-115; Winged helix-turn helix
SCOP175 6-27 -7.000 13  d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
VFDB 6-75 -24.500 41  VFG0081 (gi:15640835) VC0817 - transposase, putative [Vibrio cholerae N16961]
16 VFG0766 (gi:11527918) rorf1 - unknown [Escherichia coli E2348/69] 126 COG0614 13-108 -6.410 16  [S] COG2098 Uncharacterized protein conserved in archaea
H.sapiens 5-83 -7.610 25  sp|Q9Y6J0|CABIN_HUMAN Calcineurin-binding protein cabin-1 OS=Homo sapiens GN=CABIN1 PE=1 SV=1 (Range: 1501-1800)
HGM_OVER 11-101 -5.080 14  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 5-83 -7.270 19  tr|E9PHF9|E9PHF9_HUMAN Uncharacterized protein OS=Homo sapiens GN=POLE PE=4 SV=1 (Range: 1-134)
PDB0614 2-126 -8.690 18  3win_D mol:protein length:194 HA3
PfamA27U 2-100 -9.200 18  PF03010.9; Q9QKG0_EAV/1-152; GP4
SCOP175 24-116 -12.100 22  d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]}
VFDB 1-32 -8.010 46  VFG0571 (gi:16767044) STM3760 - putative cytoplasmic protein [Salmonella enterica (serovar typhimurium) LT2]
17 VFG0768 (gi:11527919) rorf2 - unknown [Escherichia coli E2348/69] 56 COG0614 6-45 -5.280 32  [AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains
H.sapiens 1-56 -5.600 28  sp|Q92889|XPF_HUMAN DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3 (Range: 451-750)
HGM_OVER 7-36 -2.180 20  HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;
NEW_HUMAN_DOMAINS 7-42 -6.370 19  tr|B7Z2V1|B7Z2V1_HUMAN Uncharacterized protein OS=Homo sapiens GN=CCDC117 PE=2 SV=1 (Range: 88-141)
PDB0614 10-46 -6.860 27  2kmz_A mol:protein length:53 Tumor necrosis factor receptor superfamily me
PfamA27U 2-47 -6.740 19  PF16089; B4R0T8.1/31-149; Domain of unknown function (DUF4818 topsan)
SCOP175 32-56 -5.260 28  d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
VFDB 1-41 -4.120 24  VFG0476 (gi:9944882) grvA - gifsy-2 related virulence gene [Salmonella enterica (serovar typhimurium)] (VF0110)
18 VFG0769 (gi:11527920) rorf3 - unknown [Escherichia coli E2348/69] 161 COG0614 4-119 -5.880 16  [L] COG0338 Site-specific DNA methylase
H.sapiens 2-35 -6.530 33  sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2 (Range: 901-1073)
HGM_OVER 3-133 -4.540 16  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
NEW_HUMAN_DOMAINS 29-141 -5.790 16  sp|P01266|THYG_HUMAN Thyroglobulin OS=Homo sapiens GN=TG PE=1 SV=5 (Range: 1695-1822)
PDB0614 52-121 -6.250 16  1uuz_A mol:protein length:137 INHIBITOR OF VERTEBRATE LYSOZYME
PfamA27U 22-140 -6.800 13  PF07107.6; Q9XES3_MESCR/1-119; Wound-induced protein WI12
SCOP175 11-161 -6.880 11  d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
VFDB 37-125 -4.660 22  VFG1309 (gi:21281865) cap8M - capsular polysaccharide synthesis enzyme Cap8M [Staphylococcus aureus MW2] (VF0003)
19 VFG0774 (gi:11527921) rorf4 - unknown [Escherichia coli E2348/69] 126 COG0614 19-126 -18.200 10  [S] COG4891 Uncharacterized conserved protein
H.sapiens 6-123 -8.700 sp|Q9NQZ5|STAR7_HUMAN(removed signalp:1-32) StAR-related lipid transfer protein 7, mitochondrial OS=Homo sapiens GN=STARD7 PE=1 SV=2
HGM_OVER 8-53 -4.470 PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256
NEW_HUMAN_DOMAINS 1-116 -6.610 11  sp|O60306|AQR_HUMAN Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4 (Range: 1-197)
PDB0614 13-126 -21.200 12  3ijt_A mol:protein length:155 Putative uncharacterized protein
PfamA27U 19-122 -15.500 PF10604.4; A0K021_ARTS2/1-141; Polyketide cyclase / dehydrase and lipid transport
SCOP175 19-126 -20.900 12  d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}
VFDB 19-108 -4.800 14  VFG0663 (gi:24114263) SF2999 - orf, conserved hypothetical protein [Shigella flexneri (serotype 2a) 301]
20 VFG0775 (gi:11527922) rorf5 - unknown [Escherichia coli E2348/69] 62 COG0614 27-62 -6.220 11  [S] KOG3869 Uncharacterized conserved protein
H.sapiens 1-53 -8.930 11  sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1 (Range: 901-1200)
HGM_OVER 7-62 -4.240 14  PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;
NEW_HUMAN_DOMAINS 1-53 -8.300 11  sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1 (Range: 907-1131)
PDB0614 1-60 -34.000 33  3oxn_A mol:protein length:241 Putative transcriptional regulator, LysR fami
PfamA27U 2-53 -7.060 18  PF06347.8; Q8FXS3_BRUSU/49-105; Bacterial SH3 domain
SCOP175 1-60 -33.700 31  d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}
VFDB 24-60 -4.420 16  VFG1059 (gi:15808739) orf43 - unknown [Shigella flexneri (serotype 2a) YSH6000]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.