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# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG0865 aap/aspU - Dispersin [Escherichia coli 17-2] (VF0215) 116 COG1214 1-87 -7.010 10  [S] COG3495 Uncharacterized protein conserved in bacteria
H.sapiens 12-116 -7.820 13  sp|P49619|DGKG_HUMAN Diacylglycerol kinase gamma OS=Homo sapiens GN=DGKG PE=2 SV=3 (Range: 601-791)
HGM_OVER 1-116 -8.920 17  PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;
JCSG1214 1-102 -10.400 14  SP13691H YP_213000.1 407830 Purified-2010-09-29
NEW_HUMAN_DOMAINS 29-61 -5.570 24  sp|Q96BN6|F149B_HUMAN Protein FAM149B1 OS=Homo sapiens GN=FAM149B1 PE=2 SV=2 (Range: 219-293)
PDB1214 22-115 -45.800 95  2jvu_A mol:protein length:104 DISPERSIN
PfamA27U 29-116 -8.490 PF16649; G7PIH8.1/28-184; Interleukin 23 subunit alpha
SCOP175 1-65 -7.080 16  d2jnaa1 d.230.6.1 (A:1-96) Hypothetical protein STM0082 {Salmonella typhimurium [TaxId: 90371]}
VFDB 1-69 -7.840 18  VFG0435 (gi:17233483) pefA - plasmid-encoded fimbriae; major fimbrial subunit [Salmonella enterica (serovar typhimurium) LT2] (VF0104)
2 VFG2285 (gi:110800384) nanH - sialidase [Clostridium perfringens ATCC 13124] (VF0391) 382 COG1214 14-377 -54.100 13  [G] COG4692 Predicted neuraminidase (sialidase)
H.sapiens 8-381 -73.300 19  sp|Q99519|NEUR1_HUMAN(removed signalp:1-47) Sialidase-1 OS=Homo sapiens GN=NEU1 PE=1 SV=1
HGM_OVER 40-306 -7.740 14  PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
JCSG1214 4-381 -77.300 25  SP16569E ZP_02067180.1 408137 Purified-2010-04-13
NEW_HUMAN_DOMAINS 19-81 -4.760 14  sp|Q86X10|RLGPB_HUMAN Ral GTPase-activating protein subunit beta OS=Homo sapiens GN=RALGAPB PE=1 SV=1 (Range: 896-990)
PDB1214 4-381 -81.400 32  1dil_A mol:protein length:381 SIALIDASE
PfamA27U 14-272 -22.800 10  PF15892; C7Z8Y6.1/55-339; BNR repeat-containing family member
47-359 -46.300 16  PF13088.1; B4D5G3_9BACT/56-326; BNR repeat-like domain
SCOP175 4-381 -81.600 32  d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]}
VFDB 9-381 -74.900 25  VFG2283 (gi:18309707) nanI - exo-alpha-sialidase [Clostridium perfringens 13] (VF0391)
3 VFG2286 (gi:110801889) cpe - enterotoxin Cpe [Clostridium perfringens SM101] (VF0383) 319 COG1214 140-295 -5.730 13  [S] COG3108 Uncharacterized protein conserved in bacteria
H.sapiens 164-277 -7.710 14  sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19 PE=1 SV=2 (Range: 151-450)
HGM_OVER 248-319 -3.500 PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
JCSG1214 188-310 -6.960 18  SP13513A ZP_02035120.1 407167 Purified-2010-09-20
NEW_HUMAN_DOMAINS 187-317 -5.430 11  sp|Q9UKH3|ENK4_HUMAN HERV-K_6q14.1 provirus ancestral Env polyprotein OS=Homo sapiens PE=1 SV=1 (Range: 283-464)
PDB1214 1-319 -154.000 100  3am2_A mol:protein length:328 Heat-labile enterotoxin B chain
PfamA27U 54-240 -50.500 20  PF03505.9; Q45877_CLOBO/230-426; Clostridium enterotoxin
SCOP175 214-318 -6.980 17  d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}
VFDB 227-313 -5.540 19  VFG0283 (gi:15645149) cag4 - cag pathogenicity island protein [Helicobacter pylori 26695] (VF0060)
4 VFG1640 (gi:11322959) sfaC - SfaC protein [Escherichia coli 536] 73 COG1214 2-65 -20.400 21  [K] COG2345 Predicted transcriptional regulator
H.sapiens 1-73 -16.700 15  sp|P55265|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4 (Range: 151-450)
HGM_OVER 2-50 -8.130 18  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
JCSG1214 2-65 -21.300 26  FJ9152A NPUN_22DEC03_CONTIG1_REVISED_GENENPR4821 370187 Purified-2006-11-07
NEW_HUMAN_DOMAINS 1-47 -7.990 10  sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4 (Range: 1975-2052)
PDB1214 1-73 -36.500 90  2htj_A mol:protein length:81 P fimbrial regulatory protein KS71A
PfamA27U 1-61 -27.500 45  PF04703.7; Q9ADX3_ECOLX/1-62; FaeA-like protein
SCOP175 1-73 -36.900 90  d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
VFDB 1-73 -36.900 90  VFG0891 (gi:26250997) papI_2 - PapI protein [Escherichia coli CFT073] (VF0220)
5 VFG1643 (gi:11322961) sfaD - SfaD protein [Escherichia coli 536] 179 COG1214 4-151 -27.400 13  [NU] COG3539 P pilus assembly protein, pilin FimA
H.sapiens 31-178 -8.020 10  sp|Q9H5V8|CDCP1_HUMAN(removed signalp:1-29) CUB domain-containing protein 1 OS=Homo sapiens GN=CDCP1 PE=1 SV=3 (Range: 451-750)
HGM_OVER 1-177 -6.870 PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]
JCSG1214 1-178 -77.100 56  SP18556J YP_001336916.1 411716 Selected-2009-11-12
NEW_HUMAN_DOMAINS 36-156 -5.630 12  sp|Q9NS62|THSD1_HUMAN Thrombospondin type-1 domain-containing protein 1 OS=Homo sapiens GN=THSD1 PE=1 SV=1 (Range: 199-325)
PDB1214 28-178 -62.300 29  2jmr_A mol:protein length:179 fimF
PfamA27U 1-178 -11.800 PF14855.1; E6BJX8_ECOLX/1-187; Pilus-assembly fibrillin subunit, chaperone
56-178 -41.200 21  PF16970; Q8GA68.1/52-183; Type-1 fimbrial protein, A
SCOP175 38-178 -57.500 22  d1pdkb_ b.2.3.2 (B:) PapK pilus subunit {Escherichia coli [TaxId: 562]}
VFDB 1-178 -80.500 55  VFG0874 (gi:26251202) fimI - Fimbrin-like protein fimI precursor [Escherichia coli CFT073] (VF0221)
6 VFG0772 (gi:11527908) espC - enterotoxin EspC [Escherichia coli E2348/69] (VF0173) 1305 COG1214 1-763 -14.800 12  [U] COG3210 Large exoproteins involved in heme utilization or adhesion
70-1305 -36.200 12  [S] COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain
411-1305 -73.600 14  [MU] COG3468 Type V secretory pathway, adhesin AidA
H.sapiens 2-286 -10.800 13  sp|Q9BYE2|TMPSD_HUMAN Transmembrane protease serine 13 OS=Homo sapiens GN=TMPRSS13 PE=2 SV=3
HGM_OVER 7-204 -4.270 17  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
JCSG1214 12-1305 -167.000 17  SP17585A YP_975887.1 412300 Selected-2009-11-12
NEW_HUMAN_DOMAINS 1-164 -4.600 11  sp|Q9UKL3|C8AP2_HUMAN CASP8-associated protein 2 OS=Homo sapiens GN=CASP8AP2 PE=1 SV=1 (Range: 1021-1151)
PDB1214 54-1028 -121.000 40  3sze_A mol:protein length:968 Serine protease espP
1001-1305 -71.100 76  3slj_A mol:protein length:313 Serine protease espP
PfamA27U 46-717 -103.000 44  PF02395.11; ESPP_ECO57/47-730; Immunoglobulin A1 protease
1008-1305 -9.800 10  PF09381.5; Q1RC46_ECOUT/18-318; Outer membrane protein G (OmpG)
1046-1296 -25.400 13  PF03797.14; Q87E01_XYLFT/468-724; Autotransporter beta-domain
SCOP175 1012-1305 -33.500 15  d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}
VFDB 1-1305 -223.000 49  VFG0844 (gi:3822134) espP - putative exoprotein-precursor [Escherichia coli O157:H7 EDL933] (VF0208)
7 VFG0767 (gi:11527909) orf1 - unknown [Escherichia coli E2348/69] 66 COG1214 6-60 -5.960 16  [S] COG3140 Uncharacterized protein conserved in bacteria
H.sapiens 4-62 -7.090 22  sp|O95803|NDST3_HUMAN(removed signalp:1-30) Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 OS=Homo sapiens GN=NDST3 PE=2 SV=1 (Range: 1-300)
HGM_OVER 5-47 -3.250 PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
JCSG1214 1-45 -5.780 15  SP17277A ZP_02065129.1 408639 Crystal|NMR-2010-10-27
NEW_HUMAN_DOMAINS 10-45 -6.530 19  sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2 (Range: 2505-2589)
PDB1214 2-65 -5.830 23  4bp0_A mol:protein length:250 METALLO-B-LACTAMASE
PfamA27U 22-46 -5.910 20  PF12424.3; Q4JQQ3_STRPU/1077-1141; Plasma membrane calcium transporter ATPase C terminal
SCOP175 7-53 -4.990 23  d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]}
VFDB 1-60 -4.980 13  VFG2372 (gi:123443290) wzx - RfbX [Yersinia enterocolitica 8081] (VF0392)
8 VFG0770 (gi:11527910) orf2 - unknown [Escherichia coli E2348/69] 54 COG1214 10-44 -4.290 11  [U] COG4791 Type III secretory pathway, component EscT
H.sapiens 1-52 -5.770 17  sp|Q8WXX7|AUTS2_HUMAN Autism susceptibility gene 2 protein OS=Homo sapiens GN=AUTS2 PE=1 SV=1 (Range: 1051-1259)
HGM_OVER 9-35 -4.360 25  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
JCSG1214 1-22 -5.330 SP18048A NP_372942.2 413657 Purified-2010-11-20
NEW_HUMAN_DOMAINS 1-54 -5.430 13  sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2 (Range: 196-303)
PDB1214 36-51 -6.250 43  3oak_C mol:protein length:31 Transcription elongation factor SPT6
PfamA27U 1-51 -5.900 17  PF04771.7; Q96671_9CIRC/1-121; Chicken anaemia virus VP-3 protein
SCOP175 16-34 -5.550 31  d1imta2 g.3.10.1 (A:37-80) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
VFDB 1-22 -5.880 VFG2421 (gi:21284070) sbi - IgG-binding protein SBI [Staphylococcus aureus MW2] (VF0423)
9 VFG0771 (gi:11527911) orf3 - unknown [Escherichia coli E2348/69] 390 COG1214 90-147 -7.010 17  [J] KOG3499 60S ribosomal protein L38
H.sapiens 80-337 -7.720 12  sp|Q7Z4V0|ZN438_HUMAN Zinc finger protein 438 OS=Homo sapiens GN=ZNF438 PE=2 SV=1 (Range: 601-828)
HGM_OVER 62-328 -3.460 PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;
JCSG1214 260-349 -5.090 11  GS13354A YP_001299722.1 384315 Purified-2008-05-17
NEW_HUMAN_DOMAINS 5-75 -4.750 20  sp|Q8WVM7|STAG1_HUMAN Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3 (Range: 465-536)
PDB1214 36-390 -148.000 44  3pcr_A mol:protein length:357 EspG
PfamA27U 9-390 -148.000 43  PF06872.6; Q5WMC0_ECOLX/15-397; EspG protein
SCOP175 163-228 -4.580 16  d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 9-390 -148.000 43  VFG0709 (gi:2865270) espG - Rorf2 [Escherichia coli E2348/69] (VF0184)
10 VFG0773 (gi:11527912) orf5 - unknown [Escherichia coli E2348/69] 57 COG1214 1-47 -6.570 14  [S] COG2155 Uncharacterized conserved protein
H.sapiens 17-57 -8.830 sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 (Range: 1351-1650)
HGM_OVER 27-57 -4.190 19  HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
JCSG1214 16-46 -5.450 22  SP2635H ZP_04008751.1 413849 Crystal|NMR-2012-12-20
NEW_HUMAN_DOMAINS 17-57 -9.660 24  sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 (Range: 1473-1541)
PDB1214 22-55 -6.790 11  2aj0_A mol:protein length:71 Probable cadmium-transporting ATPase
PfamA27U 1-57 -7.180 14  PF09679.5; Q4L1T4_SALCE/1-97; Type-F conjugative transfer system pilin chaperone (TraQ)
SCOP175 23-55 -6.310 18  d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 6-46 -3.690 31  VFG0905 (gi:26249404) hlyC - Hemolysin C [Escherichia coli CFT073] (VF0225)
11 VFG0777 (gi:11527914) orf6.2 - unknown [Escherichia coli E2348/69] 51 COG1214 1-48 -9.140 14  [L] COG3316 Transposase and inactivated derivatives
H.sapiens 1-50 -9.280 14  sp|Q9BXR3|POK2_HUMAN HERV-K_7p22.1 provirus ancestral Pol protein OS=Homo sapiens GN=ERVK6 PE=2 SV=2 (Range: 451-750)
HGM_OVER 11-50 -1.880 12  PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
JCSG1214 6-50 -5.710 SC.C21101A BC022008 429101 Selected-2013-01-04
NEW_HUMAN_DOMAINS 13-51 -6.410 tr|D6REQ1|D6REQ1_HUMAN Uncharacterized protein OS=Homo sapiens GN=CASP12 PE=4 SV=1 (Range: 93-168)
PDB1214 1-50 -9.790 12  1c6v_A mol:protein length:164 PROTEIN (SIV INTEGRASE)
PfamA27U 1-46 -9.940 17  PF13610.1; B5WJN4_9BURK/77-216; DDE domain
SCOP175 1-51 -9.220 12  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
VFDB 1-51 -20.600 78  VFG0081 (gi:15640835) VC0817 - transposase, putative [Vibrio cholerae N16961]
12 VFG0778 (gi:11527915) orf6.3 - unknown [Escherichia coli E2348/69] 46 COG1214 6-45 -4.210 10  [U] KOG3202 SNARE protein TLG1/Syntaxin 6
H.sapiens 11-44 -6.570 17  sp|Q96MF4|CC140_HUMAN Coiled-coil domain-containing protein 140 OS=Homo sapiens GN=CCDC140 PE=2 SV=1
HGM_OVER 21-41 -4.190 PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;
JCSG1214 11-45 -4.010 17  FN12626A SARO_25NOV03_CONTIG29_REVISED_GENE2295 379617 PDB-2009-01-30
NEW_HUMAN_DOMAINS 11-29 -5.600 26  tr|E9PAM4|E9PAM4_HUMAN Uncharacterized protein OS=Homo sapiens GN=PI4K2A PE=4 SV=1 (Range: 1-65)
PDB1214 6-41 -4.850 22  1sfc_D mol:protein length:87 PROTEIN (SNAP-25B)
PfamA27U 8-24 -6.950 17  PF12815.2; B6H820_PENCW/830-964; Spt5 C-terminal nonapeptide repeat binding Spt4
SCOP175 15-40 -3.720 23  d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
VFDB 1-46 -3.520 50  VFG0081 (gi:15640835) VC0817 - transposase, putative [Vibrio cholerae N16961]
13 VFG0780 (gi:11527916) orf7 - unknown [Escherichia coli E2348/69] 463 COG1214 1-342 -104.000 42  [L] COG4584 Transposase and inactivated derivatives
H.sapiens 1-235 -17.600 10  sp|Q9WJR5|POK3_HUMAN HERV-K_19q12 provirus ancestral Pol protein OS=Homo sapiens GN=ERVK6 PE=2 SV=2 (Range: 451-750)
81-298 -20.600 13  sp|P10266|POK10_HUMAN HERV-K_5q33.3 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=2 (Range: 601-900)
HGM_OVER 202-332 -3.610 PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
JCSG1214 13-127 -17.300 17  SP18059A ZP_02431199.1 410310 Selected-2009-11-12
NEW_HUMAN_DOMAINS 4-85 -5.870 15  sp|Q9BWC9|CC106_HUMAN Coiled-coil domain-containing protein 106 OS=Homo sapiens GN=CCDC106 PE=1 SV=1 (Range: 181-280)
PDB1214 3-340 -18.100 11  4fcy_A mol:protein length:529 Transposase
70-244 -20.200 14  4fw2_A mol:protein length:270 Integrase
120-244 -22.100 16  1asu_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE
120-299 -20.700 13  4fw1_A mol:protein length:222 Integrase
PfamA27U 1-117 -12.400 PF01710.11; P74627_SYNY3/1-120; Transposase
111-295 -12.600 PF02914.10; TRA_HAEIN/267-485; Bacteriophage Mu transposase
120-244 -16.400 16  PF00665.21; O89811_FLV/1485-1601; Integrase core domain
396-463 -10.100 32  PF01695.12; Y4IQ_RHISN/60-238; IstB-like ATP binding protein
SCOP175 2-42 -12.200 14  d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
13-97 -10.200 14  d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
120-244 -22.000 16  d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
125-292 -15.000 14  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
VFDB 1-335 -109.000 89  VFG1461 (gi:24527993) y1093 - ORF A protein [Escherichia coli 536]
1-444 -83.000 11  VFG1728 (gi:26249442) c3607 - Hypothetical protein [Escherichia coli CFT073]
14 VFG0781 (gi:11527917) orf8 - unknown [Escherichia coli E2348/69] 83 COG1214 1-83 -10.900 20  [L] COG1484 DNA replication protein
H.sapiens 1-83 -6.640 17  sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=1 SV=1 (Range: 451-750)
HGM_OVER 6-66 -5.020 16  PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;
JCSG1214 2-81 -14.500 22  NT12373A YP_804196.1 378766 Purified-2007-10-16
NEW_HUMAN_DOMAINS 1-80 -7.010 11  sp|Q86T24|KAISO_HUMAN Transcriptional regulator Kaiso OS=Homo sapiens GN=ZBTB33 PE=1 SV=2 (Range: 588-672)
PDB1214 2-81 -21.400 22  3ecc_A mol:protein length:185 DNA replication protein DnaC
PfamA27U 2-73 -46.400 35  PF01695.12; Y4IQ_RHISN/60-238; IstB-like ATP binding protein
SCOP175 6-65 -5.890 20  d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 2-83 -55.700 90  VFG1460 (gi:24527992) y1094 - ORF B protein [Escherichia coli 536]
15 VFG0776 (gi:11527918) orf6.1 - unknown [Escherichia coli E2348/69] 80 COG1214 1-74 -20.700 17  [L] COG2801 Transposase and inactivated derivatives
H.sapiens 6-62 -8.260 20  sp|Q53H47|SETMR_HUMAN Histone-lysine N-methyltransferase SETMAR OS=Homo sapiens GN=SETMAR PE=1 SV=1 (Range: 301-600)
HGM_OVER 3-24 -3.320 13  HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;
JCSG1214 6-30 -9.200 24  C.LS20761A NP_419719.1 423796 Crystal|NMR-2012-06-29
NEW_HUMAN_DOMAINS 9-52 -7.840 19  sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1 (Range: 374-430)
PDB1214 6-35 -7.180 16  2oa4_A mol:protein length:101 SiR5
PfamA27U 1-74 -30.500 20  PF13551.1; B2T8S8_BURPP/9-115; Winged helix-turn helix
SCOP175 6-33 -7.710 17  d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
VFDB 1-74 -24.100 37  VFG0081 (gi:15640835) VC0817 - transposase, putative [Vibrio cholerae N16961]
16 VFG0766 (gi:11527918) rorf1 - unknown [Escherichia coli E2348/69] 126 COG1214 13-108 -6.440 16  [S] COG2098 Uncharacterized protein conserved in archaea
H.sapiens 24-122 -8.280 16  sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=2 (Range: 451-702)
HGM_OVER 54-121 -3.950 14  PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;
JCSG1214 6-57 -7.340 17  FG7303A YP_518966.1 366882 PDB-2007-02-26
NEW_HUMAN_DOMAINS 5-83 -7.480 19  tr|E9PHF9|E9PHF9_HUMAN Uncharacterized protein OS=Homo sapiens GN=POLE PE=4 SV=1 (Range: 1-134)
PDB1214 2-126 -8.180 18  3win_D mol:protein length:194 HA3
PfamA27U 2-100 -8.790 18  PF03010.9; Q9QKG0_EAV/1-152; GP4
SCOP175 24-116 -13.200 22  d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]}
VFDB 1-32 -8.500 46  VFG0571 (gi:16767044) STM3760 - putative cytoplasmic protein [Salmonella enterica (serovar typhimurium) LT2]
17 VFG0768 (gi:11527919) rorf2 - unknown [Escherichia coli E2348/69] 56 COG1214 1-45 -3.990 22  [A] KOG0796 Spliceosome subunit
H.sapiens 2-56 -5.420 16  sp|Q5TGZ0|CA151_HUMAN UPF0327 protein C1orf151 OS=Homo sapiens GN=C1orf151 PE=1 SV=1
HGM_OVER 1-54 -3.110 11  PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;
JCSG1214 5-51 -6.640 27  RK10665A YP_613333.1 375247 Crystal|NMR-2007-06-06
NEW_HUMAN_DOMAINS 2-45 -5.810 18  sp|Q08050|FOXM1_HUMAN Forkhead box protein M1 OS=Homo sapiens GN=FOXM1 PE=1 SV=3 (Range: 624-684)
PDB1214 10-47 -7.410 28  2kmz_A mol:protein length:53 Tumor necrosis factor receptor superfamily me
PfamA27U 11-56 -5.780 26  PF11093.3; A5DP09_PICGU/1-94; Mitochondrial export protein Som1
SCOP175 4-52 -5.700 24  d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
VFDB 1-55 -4.790 19  VFG1060 (gi:15808740) orf44 - unknown [Shigella flexneri (serotype 2a) YSH6000]
18 VFG0769 (gi:11527920) rorf3 - unknown [Escherichia coli E2348/69] 161 COG1214 4-119 -6.400 15  [L] COG0338 Site-specific DNA methylase
H.sapiens 10-160 -6.830 10  sp|P54277|PMS1_HUMAN PMS1 protein homolog 1 OS=Homo sapiens GN=PMS1 PE=1 SV=1 (Range: 151-450)
HGM_OVER 20-73 -3.930 20  PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
JCSG1214 22-152 -6.290 13  PU6370B YP_168066.1 381797 Purified-2007-10-29
NEW_HUMAN_DOMAINS 1-154 -5.620 16  sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1 (Range: 3387-3651)
PDB1214 89-150 -6.590 27  1tpx_A mol:protein length:121 major prion protein
PfamA27U 9-143 -6.350 10  PF12561.3; A8TA42_9VIBR/723-861; ToxR activated gene A lipoprotein
SCOP175 23-161 -6.950 15  d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
VFDB 8-144 -5.550 16  VFG1928 (gi:15792870) pflA - paralysed flagellum protein [Campylobacter jejuni NCTC 11168] (VF0114)
19 VFG0774 (gi:11527921) rorf4 - unknown [Escherichia coli E2348/69] 126 COG1214 19-126 -15.500 [S] COG4891 Uncharacterized conserved protein
H.sapiens 6-123 -8.270 sp|Q9NQZ5|STAR7_HUMAN(removed signalp:1-32) StAR-related lipid transfer protein 7, mitochondrial OS=Homo sapiens GN=STARD7 PE=1 SV=2
HGM_OVER 8-53 -4.650 PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256
JCSG1214 19-123 -15.700 15  CL5992D 23127291 359712 Purified-2005-08-26
NEW_HUMAN_DOMAINS 5-33 -6.560 13  sp|Q96EY9|ADAT3_HUMAN tRNA-specific adenosine deaminase-like protein 3 OS=Homo sapiens GN=ADAT3 PE=1 SV=1 (Range: 26-173)
PDB1214 1-123 -42.600 20  4r7k_A mol:protein length:191 Hypothetical protein jhp0584
PfamA27U 19-95 -13.400 PF10604.4; A0K021_ARTS2/1-141; Polyketide cyclase / dehydrase and lipid transport
SCOP175 17-126 -17.500 11  d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}
VFDB 10-120 -5.110 11  VFG0905 (gi:26249404) hlyC - Hemolysin C [Escherichia coli CFT073] (VF0225)
20 VFG0775 (gi:11527922) rorf5 - unknown [Escherichia coli E2348/69] 62 COG1214 27-49 -6.510 17  [S] KOG3869 Uncharacterized conserved protein
H.sapiens 1-53 -8.450 11  sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1 (Range: 901-1200)
HGM_OVER 10-46 -4.070 10  HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;
JCSG1214 1-59 -24.200 18  MJ16305B YP_096410.1 403149 Purified-2009-09-04
NEW_HUMAN_DOMAINS 1-53 -7.700 11  sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1 (Range: 907-1131)
PDB1214 1-61 -34.100 34  4rns_A mol:protein length:223 PCP degradation transcriptional activation pr
PfamA27U 34-62 -6.420 13  PF10197.4; Q9VQF5_DROME/11-47; N-terminal domain of CBF1 interacting co-repressor CIR
SCOP175 1-60 -33.100 31  d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}
VFDB 24-60 -4.320 16  VFG1059 (gi:15808739) orf43 - unknown [Shigella flexneri (serotype 2a) YSH6000]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.