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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 PfamA26U 13-33 -4.760 38  PF07660.9; A6C2R4_9PLAN/303-351; Secretin and TonB N terminus short domain
2 TM0002 TM0002 281883 Purified-2001-08-29 41 PfamA26U 3-33 -5.760 PF03004.9; Q9M9D8_ARATH/153-297; Plant transposase (Ptta/En/Spm family)
3 TM0003 TM0003 281884 Purified-2001-12-06 40 PfamA26U 23-39 -4.350 35  PF01840.12; TCL1A_MOUSE/1-111; TCL1/MTCP1 family
4 TM0004 TM0004 281885 Purified-2004-07-19 31 PfamA26U 6-31 -4.780 15  PF02791.12; Q7RXP4_NEUCR/357-420; DDT domain
5 TM0005 TM0005 281886 Purified-2001-01-30 650 PfamA26U 170-419 -66.500 30  PF13086.1; B6HQI4_PENCW/1305-1589; AAA domain
424-626 -73.800 33  PF13087.1; D3ZG52_RAT/805-1017; AAA domain
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 PfamA26U 6-123 -43.000 22  PF02746.11; CLCB_PSEPU/5-125; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
113-320 -35.300 16  PF07476.6; O66145_CITAM/161-411; Methylaspartate ammonia-lyase C-terminus
7 TM0007 TM0007 281888 Purified-2004-07-19 438 PfamA26U 229-364 -32.900 11  PF14381.1; B9SY16_RICCO/70-280; Ethylene-responsive protein kinase Le-CTR1
259-363 -56.500 18  PF01841.14; Q0W040_UNCMA/73-192; Transglutaminase-like superfamily
316-438 -16.800 12  PF14402.1; A4SPP0_AERS4/186-501; 7 transmembrane helices usually fused to an inactive transglutaminase
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 PfamA26U 2-158 -68.700 19  PF04199.8; A8MEU2_ALKOO/9-169; Putative cyclase
9 TM0009 TM0009 281890 Purified-2001-02-14 142 PfamA26U 5-141 -44.300 15  PF09968.4; A6LNR3_THEM4/28-188; Uncharacterized protein domain (DUF2202 topsan)
10 TM0010 TM0010 281891 Purified-2005-03-03 607 PfamA26U 2-81 -9.860 21  PF01257.14; Q1HPR5_BOMMO/56-203; Respiratory-chain NADH dehydrogenase 24 Kd subunit
158-329 -36.800 27  PF01512.12; A1U014_MARAV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit
431-589 -9.710 13  PF00757.15; INSR_XENLA/189-350; Furin-like cysteine rich region
439-484 -22.200 65  PF10589.4; A7ALS7_9PORP/404-449; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
547-593 -19.100 42  PF13187.1; Q8PZV2_METMA/251-319; 4Fe-4S dicluster domain
11 TM0011 TM0011 281892 Purified-2004-02-02 128 PfamA26U 14-110 -24.100 18  PF01257.14; Q1HPR5_BOMMO/56-203; Respiratory-chain NADH dehydrogenase 24 Kd subunit
12 TM0012 TM0012 281893 Purified-2001-08-29 176 PfamA26U 26-173 -81.200 34  PF01257.14; Q1HPR5_BOMMO/56-203; Respiratory-chain NADH dehydrogenase 24 Kd subunit
13 TM0013 TM0013 281894 Purified-2001-08-24 253 PfamA26U 28-238 -15.700 15  PF14234.1; B4VMX6_9CYAN/40-360; Domain of unknown function (DUF4336 topsan)
14 TM0014 TM0014 281895 Purified-2001-01-30 278 PfamA26U 27-263 -31.400 10  PF03532.8; O50963_BORBU/3-255; OMS28 porin
82-277 -38.700 22  PF00015.16; MCPC_SALTY/323-517; Methyl-accepting chemotaxis protein (MCP) signalling domain
15 TM0015 TM0015 281896 PDB-2007-09-14 192 PfamA26U 16-186 -59.600 20  PF01558.13; Q31EX2_THICR/20-185; Pyruvate ferredoxin/flavodoxin oxidoreductase
16 TM0016 TM0016 281897 Purified-2001-08-24 101 PfamA26U 42-88 -20.300 31  PF13187.1; Q8PZV2_METMA/251-319; 4Fe-4S dicluster domain
17 TM0017 TM0017 281898 Purified-2003-03-05 394 PfamA26U 20-197 -36.300 31  PF01855.14; KORA_ARCFU/14-229; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
265-365 -12.600 17  PF02780.15; O16144_ASCSU/223-346; Transketolase, C-terminal domain
18 TM0018 TM0018 281899 Purified-2001-08-24 324 PfamA26U 55-224 -10.000 16  PF02775.16; Q6LZH8_METMP/393-541; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 PfamA26U 13-249 -52.100 13  PF13561.1; A1ZQI0_9BACT/15-256; Enoyl-(Acyl carrier protein) reductase
20 TM0020 TM0020 281901 Purified-2001-08-24 127 PfamA26U 6-121 -59.800 31  PF02537.10; A5FV99_ACICJ/73-188; CrcB-like protein


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Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.