current user: public



Announcement: our server is upgraded to a faster system. If you experience any issues during this period please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 17837next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CE21227 CE21227 1315 PDB-2004-06-11 525 SCOP175 11-427 -93.400 39  d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
2 TM0001 TM0001 281882 Purified-2001-08-24 41 SCOP175 9-39 -4.890 32  d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
3 TM0002 TM0002 281883 Purified-2001-08-29 41 SCOP175 1-27 -4.440 34  d1k0ra4 d.202.1.1 (A:-4-99) Transcription factor NusA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
4 TM0003 TM0003 281884 Purified-2001-12-06 40 SCOP175 8-36 -4.550 24  d1ufya_ d.79.1.2 (A:) Chorismate mutase {Thermus thermophilus [TaxId: 274]}
5 TM0004 TM0004 281885 Purified-2004-07-19 31 SCOP175 2-26 -3.060 16  d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
6 TM0005 TM0005 281886 Purified-2001-01-30 650 SCOP175 161-650 -14.200 14  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
170-448 -15.000 18  d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
7 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 SCOP175 2-124 -51.500 26  d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
126-345 -65.800 38  d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
8 TM0007 TM0007 281888 Purified-2004-07-19 438 SCOP175 196-435 -35.600 15  d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
9 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 SCOP175 1-224 -83.000 27  d1r61a_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus [TaxId: 1422]}
10 TM0009 TM0009 281890 Purified-2001-02-14 142 SCOP175 2-141 -53.300 32  d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
11 TM0010 TM0010 281891 Purified-2005-03-03 607 SCOP175 5-96 -24.500 31  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
110-349 -86.500 49  d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
351-434 -34.800 44  d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
435-536 -46.900 42  d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
518-598 -34.300 31  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
12 TM0011 TM0011 281892 Purified-2004-02-02 128 SCOP175 3-117 -27.400 15  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
33-125 -46.400 28  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
13 TM0012 TM0012 281893 Purified-2001-08-29 176 SCOP175 18-175 -87.900 27  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
14 TM0013 TM0013 281894 Purified-2001-08-24 253 SCOP175 1-242 -81.500 17  d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
15 TM0014 TM0014 281895 Purified-2001-01-30 278 SCOP175 39-188 -8.670 14  d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
16 TM0015 TM0015 281896 PDB-2007-09-14 192 SCOP175 6-192 -62.400 18  d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
17 TM0016 TM0016 281897 Purified-2001-08-24 101 SCOP175 16-100 -33.700 31  d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}
18 TM0017 TM0017 281898 Purified-2003-03-05 394 SCOP175 7-256 -83.200 28  d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
257-393 -47.900 31  d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
19 TM0018 TM0018 281899 Purified-2001-08-24 324 SCOP175 5-318 -70.000 27  d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
20 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 SCOP175 1-252 -94.800 40  d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}


FFAS is supported by the NIH grant R01-GM087218-01
6 1 0 6 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.