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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 COG0516 1-102 -6.140 17  [J] COG0198 Ribosomal protein L24
H.sapiens 2-129 -11.400 13  sp|Q9BZQ2|CA014_HUMAN Uncharacterized protein C1orf14 OS=Homo sapiens GN=C1orf14 PE=1 SV=2 (Range: 301-600)
HGM_OVER 8-115 -4.530 PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
JCSG0516 1-205 -41.500 25  GS13804A YP_210478.1 385141 Purified-2008-05-17
NEW_HUMAN_DOMAINS 13-60 -6.460 14  sp|O43734|CIKS_HUMAN Adapter protein CIKS OS=Homo sapiens GN=TRAF3IP2 PE=2 SV=3 (Range: 204-324)
PDB0516 2-128 -7.510 4nk6_A mol:protein length:491 Poly(beta-D-mannuronate) C5 epimerase
PfamA30U 123-192 -6.670 14  PF05283.9; F6ZX51_ORNAN/2-123; Multi-glycosylated core protein 24 (MGC-24), sialomucin
SCOP206 2-205 -6.300 d3pmea2 b.42.4.0 (A:1086-1280) automated matches {Clostridium botulinum [TaxId: 1491]}
VFDB 1-128 -8.220 10  VFG000127(gi:15598741) (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 COG0516 12-299 -5.560 13  [O] COG0760 Parvulin-like peptidyl-prolyl isomerase
H.sapiens 10-311 -6.680 10  sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=2 (Range: 31801-32100)
HGM_OVER 1-239 -3.300 16  PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;
JCSG0516 1-312 -125.000 100  GS14092A NP_808915.1 384930 Purified-2008-03-28
NEW_HUMAN_DOMAINS 118-261 -6.300 14  sp|Q5H8C1|FREM1_HUMAN FRAS1-related extracellular matrix protein 1 OS=Homo sapiens GN=FREM1 PE=1 SV=3 (Range: 30-186)
PDB0516 103-246 -9.480 13  5a9d_A mol:protein length:189 SOLUTE CARRIER FAMILY 15 MEMBER 1
PfamA30U 103-205 -6.660 12  PF14344.4; A9AZA1_HERA2/30-148; Domain of unknown function (DUF4397 topsan)
SCOP206 78-186 -6.770 11  d1jlya2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]}
VFDB 103-261 -6.410 VFG000132(gi:15598746) (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 COG0516 31-117 -12.300 12  [L] COG0776 Bacterial nucleoid DNA-binding protein
H.sapiens 38-216 -6.900 sp|Q5JPE7|NOMO2_HUMAN(removed signalp:1-31) Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1 (Range: 1-300)
HGM_OVER 27-216 -4.880 11  PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;
JCSG0516 1-258 -101.000 54  GS13689A YP_001299448.1 384418 PDB-2012-06-18
NEW_HUMAN_DOMAINS 144-216 -7.110 23  sp|O00562|PITM1_HUMAN Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNM1 PE=1 SV=4 (Range: 909-1022)
PDB0516 2-258 -100.000 54  4fmr_A mol:protein length:265 uncharacterized hypothetical protein
PfamA30U 4-124 -53.000 39  PF14848.4; J9QY98_RIEAN/3-123; DNA-binding domain
132-231 -44.500 39  PF14734.4; B3QWM9_CHLT3/130-225; Domain of unknown function (DUF4469 topsan) with IG-like fold
SCOP206 32-116 -13.200 16  d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
VFDB 95-219 -8.790 12  VFG001437(gi:4836791) (cseA) CS22 adhesin protein [Adhesive fimbriae (VF0213)] [Escherichia coli str. ARG-3]
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 COG0516 1-172 -6.580 11  [U] KOG3284 Vacuolar sorting protein VPS28
H.sapiens 27-155 -8.140 20  sp|Q15022|SUZ12_HUMAN Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3 (Range: 1-300)
HGM_OVER 15-199 -4.480 PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;
JCSG0516 27-162 -7.380 13  FN9550A YP_461247.1 379838 Crystal|NMR-2007-10-31
NEW_HUMAN_DOMAINS 101-164 -5.760 21  sp|Q15468|STIL_HUMAN SCL-interrupting locus protein OS=Homo sapiens GN=STIL PE=1 SV=2 (Range: 581-658)
PDB0516 26-209 -6.800 17  2fwy_A mol:protein length:256 Heat shock protein HSP 90-alpha
PfamA30U 26-159 -6.790 13  PF08664.8; Q81S68_BACAN/159-299; YcbB domain
SCOP206 28-207 -6.290 15  d2w70a2 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}
VFDB 2-149 -6.520 19  VFG000762(gi:215276207) (bfpL) BFP biogenesis protein BfpL [BFP (VF0174)] [Escherichia coli O127:H6 str. E2348/69]
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 COG0516 78-177 -57.500 31  [J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17
H.sapiens 95-178 -41.700 31  sp|Q9Y2R5|RT17_HUMAN 28S ribosomal protein S17, mitochondrial OS=Homo sapiens GN=MRPS17 PE=1 SV=1
HGM_OVER 1-100 -5.540 14  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
JCSG0516 103-177 -58.700 52  TM1491 TM1491 283348 Selected-2001-10-12
NEW_HUMAN_DOMAINS 5-69 -6.550 20  sp|Q6ZS17|FA65A_HUMAN Protein FAM65A OS=Homo sapiens GN=FAM65A PE=1 SV=1 (Range: 895-1047)
PDB0516 98-177 -58.900 50  1eg0_G mol:protein length:93 PROTEIN (S17 RIBOSOMAL PROTEIN)
PfamA30U 108-175 -49.700 47  PF00366.18; M9X2Z9_MANHA/10-77; Ribosomal protein S17
SCOP206 103-177 -56.400 48  d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus thermophilus [TaxId: 274]}
VFDB 100-145 -7.230 13  VFG042860(gi:52840864) (pilE3) type IV pilus pilin [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 COG0516 4-94 -7.710 16  [P] KOG4404 Tandem pore domain K+ channel TASK3/THIK-1
H.sapiens 9-106 -7.650 15  sp|A6NEH6|YB028_HUMAN Transmembrane protein ENSP00000343375 OS=Homo sapiens PE=4 SV=2
HGM_OVER 1-49 -10.300 18  HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;
JCSG0516 1-104 -12.800 17  GS13122A YP_001297399.1 384257 Crystal|NMR-2008-05-02
1-146 -10.500 15  GS13255A NP_811971.1 384964 Purified-2010-09-20
NEW_HUMAN_DOMAINS 4-84 -6.440 17  sp|Q8N2C7|UNC80_HUMAN Protein unc-80 homolog OS=Homo sapiens GN=UNC80 PE=2 SV=2 (Range: 767-872)
PDB0516 9-73 -8.130 21  1wwx_A mol:protein length:107 E74-like factor 5 ESE-2b
PfamA30U 9-106 -7.470 17  PF15444.4; M3W3J1_FELCA/1-214; Transmembrane protein 247
SCOP206 95-146 -7.570 30  d1tx9a1 a.84.1.1 (A:7-144) Scaffolding protein gpD of bacteriophage procapsid {Bacteriophage phi-X174 [TaxId: 10847]}
VFDB 1-131 -7.270 16  VFG002066(gi:15595278) (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 COG0516 45-122 -8.240 28  [K] COG5450 Transcription regulator of the Arc/MetJ class
H.sapiens 11-112 -8.840 23  sp|Q86XI8|CS068_HUMAN Uncharacterized protein C19orf68 OS=Homo sapiens GN=C19orf68 PE=1 SV=2 (Range: 301-600)
HGM_OVER 42-97 -4.690 16  HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;
JCSG0516 5-77 -8.650 30  SP2635D ZP_04008769.1 413841 Purified-2010-09-29
NEW_HUMAN_DOMAINS 3-124 -6.050 18  sp|P40967|PMEL_HUMAN Melanocyte protein PMEL OS=Homo sapiens GN=PMEL PE=1 SV=2 (Range: 25-233)
PDB0516 3-77 -7.890 14  3fby_A mol:protein length:551 Cartilage oligomeric matrix protein
PfamA30U 62-102 -7.020 26  PF15183.4; D4A897_RAT/1-89; Melanocortin-2 receptor accessory protein family
SCOP206 21-128 -7.410 18  d3v98a1 b.12.1.0 (A:5-114) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 6-125 -5.270 20  VFG001959(gi:15792749) (hddC) capsular polysaccharide heptosyltransferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 COG0516 8-166 -22.400 10  [R] KOG4144 Arylalkylamine N-acetyltransferase
H.sapiens 1-158 -22.700 16  sp|Q96EK6|GNA1_HUMAN Glucosamine 6-phosphate N-acetyltransferase OS=Homo sapiens GN=GNPNAT1 PE=1 SV=1
HGM_OVER 35-176 -3.580 11  HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
JCSG0516 1-177 -25.000 19  FN2031G NP_988304.1 379585 Purified-2007-10-04
NEW_HUMAN_DOMAINS 27-105 -7.860 16  sp|Q8IXR9|CL056_HUMAN Uncharacterized protein C12orf56 OS=Homo sapiens GN=C12orf56 PE=2 SV=2 (Range: 1-108)
PDB0516 4-163 -24.600 1m44_A mol:protein length:181 Aminoglycoside 2`-N-acetyltransferase
PfamA30U 24-181 -25.700 16  PF13673.5; R6CQE4_9CLOT/34-160; Acetyltransferase (GNAT) domain
SCOP206 1-159 -24.900 16  d2veza_ d.108.1.0 (A:) automated matches {Aspergillus fumigatus [TaxId: 5085]}
VFDB 2-177 -24.500 11  VFG045514(gi:52841381) (lpg1147) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 COG0516 1-343 -120.000 29  [P] COG0226 ABC-type phosphate transport system, periplasmic component
H.sapiens 126-266 -6.350 10  sp|O00584|RNT2_HUMAN(removed signalp:1-24) Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV=2
HGM_OVER 24-161 -2.790 13  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
JCSG0516 6-343 -95.200 18  SP19114B NP_249380.1 413333 Selected-2009-11-12
NEW_HUMAN_DOMAINS 54-172 -5.270 12  sp|Q8TB96|TIP_HUMAN T-cell immunomodulatory protein OS=Homo sapiens GN=ITFG1 PE=1 SV=1 (Range: 448-565)
PDB0516 23-342 -122.000 34  1a40_A mol:protein length:321 PHOSPHATE-BINDING PERIPLASMIC PROTEIN PRECURS
PfamA30U 16-305 -37.300 15  PF12849.5; B6YQR6_AZOPC/32-299; PBP superfamily domain
SCOP206 23-342 -122.000 34  d1ixha_ c.94.1.1 (A:) Phosphate-binding protein {Escherichia coli [TaxId: 562]}
VFDB 3-323 -7.300 13  VFG001205(gi:15676534) (fbpA) iron(III) ABC transporter, periplasmic binding protein [FbpABC (VF0272)] [Neisseria meningitidis MC58]
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 COG0516 283-356 -5.260 14  [S] COG4471 Uncharacterized protein conserved in bacteria
H.sapiens 196-354 -7.450 13  sp|Q13519|PNOC_HUMAN(removed signalp:1-19) Nociceptin OS=Homo sapiens GN=PNOC PE=1 SV=1
HGM_OVER 114-235 -3.240 18  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
JCSG0516 231-355 -6.380 14  SP17230A YP_001712982.1 406419 Purified-2010-09-20
NEW_HUMAN_DOMAINS 8-73 -5.070 19  sp|Q6P4R8|NFRKB_HUMAN Nuclear factor related to kappa-B-binding protein OS=Homo sapiens GN=NFRKB PE=1 SV=2 (Range: 569-663)
PDB0516 7-177 -6.720 16  4d7l_A mol:protein length:240 PEPTIDE METHIONINE SULFOXIDE REDUCTASE MSRA
PfamA30U 248-355 -6.550 17  PF14878.4; J9E9T8_WUCBA/29-133; Death-like domain of SPT6
SCOP206 28-203 -6.200 19  d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}
VFDB 14-193 -5.890 17  VFG021840(gi:15608487) (mbtK) Lysine N-acetyltransferase MbtK [mycobactin (IA031)] [Mycobacterium tuberculosis H37Rv]
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 COG0516 132-282 -9.940 14  [S] KOG4351 Uncharacterized conserved protein
H.sapiens 205-277 -11.200 15  sp|O43147|SGSM2_HUMAN Small G protein signaling modulator 2 OS=Homo sapiens GN=SGSM2 PE=1 SV=4 (Range: 601-900)
HGM_OVER 193-280 -4.560 13  PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
JCSG0516 124-281 -8.730 15  WS2513B.RBM10 BC024153 421602 PDB-2012-08-27
NEW_HUMAN_DOMAINS 192-278 -8.070 20  sp|Q86WV6|TM173_HUMAN Transmembrane protein 173 OS=Homo sapiens GN=TMEM173 PE=1 SV=1 (Range: 110-331)
PDB0516 195-278 -8.690 26  1mv3_A mol:protein length:213 Myc box dependent interacting protein 1
PfamA30U 201-280 -11.500 23  PF15759.3; G5BQB5_HETGA/102-601; TMEM108 family
SCOP206 198-278 -7.240 22  d4emta1 d.387.1.1 (A:155-337) Tyrosinase cofactor MelC1 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 211-279 -7.960 16  VFG000743(gi:2865303) (espD) EspD [EspD (VF0180)] [Escherichia coli O127:H6 str. E2348/69]
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 COG0516 30-276 -7.740 13  [M] COG5434 Endopolygalacturonase
H.sapiens 15-147 -8.050 18  sp|Q9P2P6|STAR9_HUMAN StAR-related lipid transfer protein 9 OS=Homo sapiens GN=STARD9 PE=2 SV=2 (Range: 451-750)
HGM_OVER 6-202 -4.450 12  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
JCSG0516 1-354 -91.300 100  CM8499A NP_808925.1 368537 Purified-2010-09-29
NEW_HUMAN_DOMAINS 34-142 -4.740 23  sp|Q53EP0|FND3B_HUMAN Fibronectin type III domain-containing protein 3B OS=Homo sapiens GN=FNDC3B PE=1 SV=2 (Range: 1-129)
PDB0516 1-291 -7.740 10  4mr0_A mol:protein length:648 Plasmin and fibronectin-binding protein A
PfamA30U 30-176 -7.050 PF03548.13; LOLA_PSEPK/34-197; Outer membrane lipoprotein carrier protein LolA
SCOP206 2-176 -7.010 12  d2w7qa_ b.125.1.0 (A:) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
VFDB 1-291 -5.960 10  VFG043465(gi:15903694) (pfbA) cell wall surface anchor family protein, Plasminogen- and Fibronectin-binding protein A [PfbA (VF0525)] [Streptococcus pneumoniae R6]
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 COG0516 7-134 -6.980 12  [O] KOG0425 Ubiquitin-protein ligase
H.sapiens 10-128 -7.380 13  sp|Q6AI39|K0240_HUMAN Uncharacterized protein KIAA0240 OS=Homo sapiens GN=KIAA0240 PE=2 SV=2 (Range: 1-300)
HGM_OVER 2-131 -4.110 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG0516 1-102 -6.840 10  TM1621 TM1621 283478 PDB-2003-02-12
NEW_HUMAN_DOMAINS 122-175 -5.210 20  sp|Q96JN8|NEUL4_HUMAN Neuralized-like protein 4 OS=Homo sapiens GN=NEURL4 PE=1 SV=2 (Range: 1316-1440)
PDB0516 19-132 -9.460 13  3ivp_A mol:protein length:126 Putative transposon-related DNA-binding prote
PfamA30U 23-164 -8.190 17  PF08989.8; F2KUP1_PREDF/4-147; Domain of unknown function (DUF1896 topsan)
SCOP206 23-167 -8.940 16  d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816 {Porphyromonas gingivalis [TaxId: 837]}
VFDB 11-180 -5.690 12  VFG002061(gi:15595273) (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 COG0516 1-551 -39.300 16  [T] COG5002 Signal transduction histidine kinase
281-557 -39.600 20  [T] COG0642 Signal transduction histidine kinase
414-802 -22.500 11  [L] COG1389 DNA topoisomerase VI, subunit B
576-788 -27.900 10  [T] COG2198 FOG: HPt domain
H.sapiens 300-550 -15.600 sp|Q5CZC0|FSIP2_HUMAN Fibrous sheath-interacting protein 2 OS=Homo sapiens GN=FSIP2 PE=1 SV=4 (Range: 4201-4500)
451-729 -31.300 12  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
HGM_OVER 428-633 -2.900 16  PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
JCSG0516 167-559 -62.300 20  CC20737A NP_421285.1 423155 Purified-2014-07-08
212-807 -61.100 20  SP0400I ZP_03458762.1 407487 Selected-2009-11-12
309-697 -71.800 20  C.LS21380A NP_421956.1 430524 Selected-2011-09-02
NEW_HUMAN_DOMAINS 551-691 -27.700 10  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB0516 172-554 -37.600 18  4i5s_A mol:protein length:450 Putative histidine kinase CovS; VicK-like pro
295-555 -57.800 25  4q20_A mol:protein length:268 Sensor protein DivL
450-692 -49.300 19  2ayx_A mol:protein length:254 Sensor kinase protein rcsC
PfamA30U 327-391 -24.700 30  PF00512.23; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
344-535 -14.300 13  PF10090.7; V5SF53_9RHIZ/32-212; Histidine phosphotransferase
438-545 -39.900 43  PF02518.24; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
570-680 -27.900 20  PF00072.22; RSSB_ECOLI/10-121; Response regulator receiver domain
SCOP206 295-394 -20.700 28  d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
364-552 -24.100 14  d2e0aa2 d.122.1.0 (A:188-386) automated matches {Human (Homo sapiens) [TaxId: 9606]}
395-548 -42.000 30  d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
563-693 -36.100 27  d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
567-728 -21.500 14  d3rqia_ c.23.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}
VFDB 192-547 -31.800 15  VFG001213(gi:15599742) (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
300-561 -36.400 25  VFG009810(gi:15607898) (phoR) Possible two component system response sensor kinase membrane associated PhoR [PhoP/R (CVF331)] [Mycobacterium tuberculosis H37Rv]
549-788 -18.900 16  VFG001386(gi:15607897) (phoP) Possible two component system response transcriptional positive regulator PhoP [PhoP (VF0286)] [Mycobacterium tuberculosis H37Rv]
569-691 -29.800 21  VFG002532(gi:53720917) (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 COG0516 2-432 -112.000 35  [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
H.sapiens 1-154 -21.200 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
1-224 -16.100 10  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
124-428 -11.800 15  sp|Q9NU22|MDN1_HUMAN Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2 (Range: 1051-1350)
131-346 -12.300 13  sp|Q9NU22|MDN1_HUMAN Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2 (Range: 1651-1950)
HGM_OVER 4-282 -3.060 11  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
JCSG0516 3-262 -44.400 12  GD14144A YP_796118.1 387985 Crystal|NMR-2008-05-01
72-432 -81.300 17  TM1580 TM1580 283437 Purified-2001-11-20
NEW_HUMAN_DOMAINS 3-115 -23.000 13  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB0516 3-432 -115.000 39  4l4u_A mol:protein length:447 Transcriptional regulator (NtrC family)
PfamA30U 4-111 -34.600 31  PF00072.22; RSSB_ECOLI/10-121; Response regulator receiver domain
62-350 -13.500 14  PF08298.9; YEAG_ECOLI/19-380; PrkA AAA domain
127-293 -78.000 46  PF00158.24; Q8E8E7_SHEON/154-320; Sigma-54 interaction domain
388-428 -12.700 34  PF02954.17; E4PKW5_MARAH/521-561; Bacterial regulatory protein, Fis family
SCOP206 3-126 -41.900 33  d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
126-377 -91.600 43  d5expa_ c.37.1.0 (A:) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
VFDB 2-432 -117.000 34  VFG001249(gi:15596296) (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 COG0516 135-205 -7.510 26  [NU] COG4966 Tfp pilus assembly protein PilW
H.sapiens 150-204 -8.120 16  sp|Q9ULM3|YETS2_HUMAN YEATS domain-containing protein 2 OS=Homo sapiens GN=YEATS2 PE=1 SV=2 (Range: 1-300)
HGM_OVER 133-209 -6.030 HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;
JCSG0516 136-205 -6.980 TM1127 TM1127 282993 Purified-2001-12-12
NEW_HUMAN_DOMAINS 143-211 -4.990 10  sp|Q3B7T1|EDRF1_HUMAN Erythroid differentiation-related factor 1 OS=Homo sapiens GN=EDRF1 PE=1 SV=1 (Range: 106-210)
PDB0516 133-212 -6.700 15  1hfe_S mol:protein length:123 PROTEIN (FE-ONLY HYDROGENASE (E.C.1.18.99.1)
PfamA30U 2-211 -53.800 13  PF09357.8; F4C775_SPHS2/62-280; RteC protein
SCOP206 4-205 -5.500 10  d3fysa1 c.119.1.0 (A:1-281) automated matches {Bacillus subtilis [TaxId: 1423]}
VFDB 135-205 -7.860 17  VFG001208(gi:15599748) (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 COG0516 194-312 -7.410 [Z] KOG3756 Pinin (desmosome-associated protein)
H.sapiens 196-313 -10.600 15  sp|Q12802|AKP13_HUMAN A-kinase anchor protein 13 OS=Homo sapiens GN=AKAP13 PE=1 SV=2 (Range: 2551-2813)
HGM_OVER 244-312 -5.630 10  PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
JCSG0516 233-312 -10.500 10  SP17492A NP_390330.1 406727 Purified-2010-09-29
NEW_HUMAN_DOMAINS 291-315 -7.280 28  sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1 PE=1 SV=4 (Range: 244-320)
PDB0516 198-312 -7.970 3j7y_q mol:protein length:222 CRIF1
PfamA30U 194-311 -8.110 PF07960.9; CBP4_CANAL/5-137; CBP4
SCOP206 3-81 -8.100 d1ukfa1 d.3.1.10 (A:81-267) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 146-315 -5.530 VFG000137(gi:15598356) (wzz) positive regulator for alginate biosynthesis MucC [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 COG0516 21-124 -6.490 11  [K] COG3561 Phage anti-repressor protein
H.sapiens 24-228 -6.200 12  sp|P28370|SMCA1_HUMAN Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2 (Range: 451-750)
HGM_OVER 98-185 -4.840 10  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
JCSG0516 25-238 -6.540 SP18670A ZP_02031592.1 412961 Selected-2009-11-12
NEW_HUMAN_DOMAINS 1-145 -6.430 16  sp|A1A4V9|CP093_HUMAN Coiled-coil domain-containing protein C16orf93 OS=Homo sapiens GN=C16orf93 PE=2 SV=1 (Range: 59-230)
PDB0516 99-146 -7.460 10  1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
PfamA30U 36-127 -5.720 12  PF05189.11; E4X3C8_OIKDI/185-292; RNA 3`-terminal phosphate cyclase (RTC), insert domain
SCOP206 99-146 -7.930 10  d1ukfa1 d.3.1.10 (A:81-267) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 1-238 -5.840 10  VFG001348(gi:22537329) (cpsE) glycosyl transferase CpsE [Capsule (VF0274)] [Streptococcus agalactiae 2603V/R]
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 COG0516 1-84 -7.150 16  [C] COG3052 Citrate lyase, gamma subunit
H.sapiens 1-104 -6.110 11  sp|P08183|MDR1_HUMAN Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3 (Range: 151-450)
HGM_OVER 10-81 -3.720 PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
JCSG0516 1-67 -7.810 10  PU6338A SARO_25NOV03_CONTIG30_REVISED_GENE2773 381800 Crystal|NMR-2009-04-11
NEW_HUMAN_DOMAINS 4-44 -5.570 sp|Q9H0K6|PUS7L_HUMAN Pseudouridylate synthase 7 homolog-like protein OS=Homo sapiens GN=PUS7L PE=1 SV=1 (Range: 117-228)
PDB0516 3-77 -7.100 12  3kt1_A mol:protein length:633 PKHD-type hydroxylase TPA1
PfamA30U 7-56 -7.750 16  PF06857.9; CITD_STRU0/4-85; Malonate decarboxylase delta subunit (MdcD)
SCOP206 52-104 -6.450 17  g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}
VFDB 1-104 -6.300 14  VFG006622(gi:15645389) (flhB) flagellar biosynthesis protein [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 COG0516 43-150 -6.940 11  [P] COG2156 K+-transporting ATPase, c chain
H.sapiens 2-152 -8.810 11  sp|Q9Y2I7|FYV1_HUMAN 1-phosphatidylinositol-3-phosphate 5-kinase OS=Homo sapiens GN=PIKFYVE PE=1 SV=3 (Range: 901-1200)
HGM_OVER 35-90 -4.970 PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
JCSG0516 6-105 -7.100 10  SP16582E YP_001304103.1 412685 Selected-2009-11-12
NEW_HUMAN_DOMAINS 46-93 -5.400 12  sp|Q96LW4|CC111_HUMAN Coiled-coil domain-containing protein 111 OS=Homo sapiens GN=CCDC111 PE=1 SV=2 (Range: 33-112)
PDB0516 46-89 -7.260 15  1nrj_A mol:protein length:158 Signal recognition particle receptor alpha su
PfamA30U 1-151 -6.740 10  PF16439.3; R6WPX0_9PORP/21-235; Domain of unknown function (DUF5036 topsan)
SCOP206 46-89 -7.250 15  d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 1-152 -5.580 VFG001979(gi:32469830) (virB11) Type IV secretion system protein VirB11 [Type IV secretion system (VF0325)] [Campylobacter jejuni subsp. jejuni 81-176]


FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 3 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.