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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 COG0614 1-205 -6.610 10  [R] KOG3005 GIY-YIG type nuclease
H.sapiens 2-129 -10.400 13  sp|Q9BZQ2|CA014_HUMAN Uncharacterized protein C1orf14 OS=Homo sapiens GN=C1orf14 PE=1 SV=2 (Range: 301-600)
HGM_OVER 1-34 -5.100 17  HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;
NEW_HUMAN_DOMAINS 13-64 -6.780 11  sp|O43734|CIKS_HUMAN Adapter protein CIKS OS=Homo sapiens GN=TRAF3IP2 PE=2 SV=3 (Range: 204-324)
PDB0614 14-92 -6.660 11  2ftc_N mol:protein length:96 mitochondrial ribosomal protein L24
PfamA27U 2-199 -6.530 10  PF16318; D7IDS3.1/184-486; Domain of unknown function (DUF4957 topsan)
SCOP175 1-102 -6.180 19  d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}
VFDB 1-128 -6.650 10  VFG0127 (gi:15598741) algG - outer membrane protein AlgE [Pseudomonas aeruginosa PAO1] (VF0091)
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 COG0614 92-286 -5.390 12  [O] KOG1193 Arginyl-tRNA-protein transferase
H.sapiens 53-307 -8.060 10  sp|Q8IXH8|CAD26_HUMAN(removed signalp:1-27) Cadherin-like protein 26 OS=Homo sapiens GN=CDH26 PE=2 SV=3 (Range: 1-300)
HGM_OVER 122-266 -4.400 15  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
NEW_HUMAN_DOMAINS 118-261 -5.270 14  sp|Q5H8C1|FREM1_HUMAN FRAS1-related extracellular matrix protein 1 OS=Homo sapiens GN=FREM1 PE=1 SV=3 (Range: 30-186)
PDB0614 93-245 -6.090 3lnd_A mol:protein length:207 Cdh6 protein
PfamA27U 100-245 -6.530 10  PF11182.3; Q8RSY6_PSEFL/7-200; Alginate O-acetyl transferase AlgF
SCOP175 91-214 -5.720 15  d3seba2 d.15.6.1 (A:122-238) Staphylococcal enterotoxin B, SEB {Staphylococcus aureus [TaxId: 1280]}
VFDB 27-172 -5.900 10  VFG0132 (gi:15598746) algF - alginate o-acetyltransferase AlgF [Pseudomonas aeruginosa PAO1] (VF0091)
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 COG0614 31-117 -10.100 12  [L] COG0776 Bacterial nucleoid DNA-binding protein
H.sapiens 15-216 -7.690 10  sp|Q15155|NOMO1_HUMAN(removed signalp:1-31) Nodal modulator 1 OS=Homo sapiens GN=NOMO1 PE=1 SV=5 (Range: 1-300)
HGM_OVER 33-216 -5.740 11  PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;
NEW_HUMAN_DOMAINS 144-216 -7.470 23  sp|O00562|PITM1_HUMAN Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNM1 PE=1 SV=4 (Range: 909-1022)
PDB0614 2-258 -108.000 54  4fmr_A mol:protein length:265 uncharacterized hypothetical protein
PfamA27U 4-125 -49.400 42  PF14848.1; E4TDT7_RIEAD/3-124; DNA-binding domain
132-232 -43.100 39  PF14734.1; B3QWM9_CHLT3/130-226; Domain of unknown function (DUF4469 topsan) with IG-like fold
SCOP175 32-116 -9.260 16  d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
VFDB 82-226 -6.320 VFG1549 (gi:23954233) prfH - PrfH protein [Escherichia coli 536]
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 COG0614 23-222 -6.980 21  [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain
H.sapiens 1-172 -7.610 11  sp|Q9UK41|VPS28_HUMAN Vacuolar protein sorting-associated protein 28 homolog OS=Homo sapiens GN=VPS28 PE=1 SV=1
HGM_OVER 9-196 -4.480 10  PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;
NEW_HUMAN_DOMAINS 101-163 -6.250 22  sp|Q15468|STIL_HUMAN SCL-interrupting locus protein OS=Homo sapiens GN=STIL PE=1 SV=2 (Range: 581-658)
PDB0614 26-209 -7.120 17  2fwy_A mol:protein length:256 Heat shock protein HSP 90-alpha
PfamA27U 23-222 -7.030 22  PF02574.11; METH_PSEPU/19-330; Homocysteine S-methyltransferase
SCOP175 64-209 -6.510 21  d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-148 -6.030 19  VFG0762 (gi:6009392) bfpL - BfpL [Escherichia coli B171] (VF0174)
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 COG0614 78-177 -58.800 31  [J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17
H.sapiens 95-178 -44.400 31  sp|Q9Y2R5|RT17_HUMAN 28S ribosomal protein S17, mitochondrial OS=Homo sapiens GN=MRPS17 PE=1 SV=1
HGM_OVER 1-100 -4.930 14  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
NEW_HUMAN_DOMAINS 1-24 -6.320 37  sp|Q6UXB0|F131A_HUMAN Protein FAM131A OS=Homo sapiens GN=FAM131A PE=2 SV=1 (Range: 22-106)
PDB0614 51-177 -60.900 25  3bbn_Q mol:protein length:142 Ribosomal Protein S17
PfamA27U 108-176 -52.500 55  PF00366.15; RS17_THEMA/8-76; Ribosomal protein S17
SCOP175 104-177 -54.000 43  d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}
VFDB 102-144 -7.060 16  VFG1212 (gi:15599752) pilE - type 4 fimbrial biogenesis protein PilE [Pseudomonas aeruginosa PAO1] (VF0082)
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 COG0614 4-99 -7.810 16  [P] KOG4404 Tandem pore domain K+ channel TASK3/THIK-1
H.sapiens 7-106 -9.810 15  sp|A6NEH6|YB028_HUMAN Transmembrane protein ENSP00000343375 OS=Homo sapiens PE=4 SV=2
HGM_OVER 1-77 -8.200 18  HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;
NEW_HUMAN_DOMAINS 14-146 -7.060 13  sp|Q96T21|SEBP2_HUMAN Selenocysteine insertion sequence-binding protein 2 OS=Homo sapiens GN=SECISBP2 PE=1 SV=2 (Range: 1-149)
PDB0614 11-143 -8.100 16  2fge_A mol:protein length:995 zinc metalloprotease (insulinase family)
PfamA27U 40-114 -7.400 18  PF02922.13; GLGB_ECOLI/124-207; Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
SCOP175 11-138 -7.660 14  d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 1-135 -6.000 15  VFG2066 (gi:15595278) PA0080 - hypothetical protein [Pseudomonas aeruginosa PAO1] (VF0334)
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 COG0614 45-122 -7.970 28  [K] COG5450 Transcription regulator of the Arc/MetJ class
H.sapiens 11-112 -8.390 23  sp|Q86XI8|CS068_HUMAN Uncharacterized protein C19orf68 OS=Homo sapiens GN=C19orf68 PE=1 SV=2 (Range: 301-600)
HGM_OVER 42-98 -5.000 15  HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;
NEW_HUMAN_DOMAINS 10-85 -6.100 31  sp|Q96M86|DNHD1_HUMAN Dynein heavy chain domain-containing protein 1 OS=Homo sapiens GN=DNHD1 PE=1 SV=2 (Range: 69-158)
PDB0614 27-82 -6.590 12  3q47_B mol:protein length:137 STIP1 homology and U box-containing protein 1
PfamA27U 21-95 -6.570 16  PF06232.6; Q2HVW6_MEDTR/41-164; Embryo-specific protein 3, (ATS3)
SCOP175 27-123 -6.560 10  d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 8-116 -5.300 18  VFG0645 (gi:24114245) SF2981 - orf, conserved hypothetical protein [Shigella flexneri (serotype 2a) 301]
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 COG0614 2-165 -20.200 10  [R] KOG2488 Acetyltransferase (GNAT) domain-containing protein
H.sapiens 1-158 -21.700 12  sp|Q9H7X0|NAT15_HUMAN N-acetyltransferase 15 OS=Homo sapiens GN=NAT15 PE=2 SV=1
51-177 -22.400 11  sp|O60502|NCOAT_HUMAN Bifunctional protein NCOAT OS=Homo sapiens GN=MGEA5 PE=1 SV=2 (Range: 751-916)
HGM_OVER 35-176 -3.620 11  HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
NEW_HUMAN_DOMAINS 27-105 -8.320 16  sp|Q8IXR9|CL056_HUMAN Uncharacterized protein C12orf56 OS=Homo sapiens GN=C12orf56 PE=2 SV=2 (Range: 1-108)
PDB0614 1-158 -25.400 16  2vez_A mol:protein length:190 PUTATIVE GLUCOSAMINE 6-PHOSPHATE ACETYLTRANSF
PfamA27U 1-163 -21.100 PF02474.10; A5A959_9BRAD/14-210; Nodulation protein A (NodA)
SCOP175 4-163 -24.800 d1m4ia_ d.108.1.1 (A:) Aminoglycoside 2`-N-acetyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 19-173 -16.200 10  VFG2112 (gi:52840358) vipF - VipF, N-terminal acetyltransferase, GNAT family [Legionella pneumophila Philadelphia 1] (VF0156)
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 COG0614 3-343 -119.000 29  [P] COG0226 ABC-type phosphate transport system, periplasmic component
H.sapiens 45-170 -6.120 sp|Q8N9R0|CP081_HUMAN Putative uncharacterized protein C16orf81 OS=Homo sapiens GN=C16orf81 PE=5 SV=2
HGM_OVER 26-212 -3.520 13  PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)
NEW_HUMAN_DOMAINS 54-172 -5.870 12  sp|Q8TB96|TIP_HUMAN T-cell immunomodulatory protein OS=Homo sapiens GN=ITFG1 PE=1 SV=1 (Range: 448-565)
PDB0614 23-342 -117.000 33  1a40_A mol:protein length:321 PHOSPHATE-BINDING PERIPLASMIC PROTEIN PRECURS
PfamA27U 16-306 -12.500 11  PF12849.2; A1EKQ7_VIBCL/24-252; PBP superfamily domain
SCOP175 23-342 -117.000 33  d1ixha_ c.94.1.1 (A:) Phosphate-binding protein {Escherichia coli [TaxId: 562]}
VFDB 12-318 -8.120 15  VFG0839 (gi:15801498) paa - Paa [Escherichia coli O157:H7 EDL933] (VF0194)
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 COG0614 28-197 -5.410 19  [O] KOG1635 Peptide methionine sulfoxide reductase
H.sapiens 196-354 -7.690 13  sp|Q13519|PNOC_HUMAN(removed signalp:1-19) Nociceptin OS=Homo sapiens GN=PNOC PE=1 SV=1
HGM_OVER 61-353 -2.840 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;
NEW_HUMAN_DOMAINS 256-355 -5.920 14  tr|A6NNP9|A6NNP9_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZWINT PE=4 SV=1 (Range: 1-123)
PDB0614 72-343 -7.310 14  2ghi_A mol:protein length:260 transport protein
PfamA27U 245-356 -9.150 20  PF14878.1; SPT6H_HUMAN/1050-1160; Death-like domain of SPT6
SCOP175 268-353 -6.540 20  d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 63-194 -5.410 23  VFG0760 (gi:6009390) bfpJ - pilin-like subunit [Escherichia coli B171] (VF0174)
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 COG0614 237-282 -8.940 17  [K] KOG4395 Transcription factor Atonal, contains HTH domain
H.sapiens 205-277 -11.600 16  sp|Q2NKQ1|SGSM1_HUMAN Small G protein signaling modulator 1 OS=Homo sapiens GN=SGSM1 PE=1 SV=2 (Range: 751-1050)
HGM_OVER 201-282 -4.840 20  PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;
NEW_HUMAN_DOMAINS 202-278 -7.350 22  sp|Q86WV6|TM173_HUMAN Transmembrane protein 173 OS=Homo sapiens GN=TMEM173 PE=1 SV=1 (Range: 110-331)
PDB0614 195-278 -9.610 26  1mv3_A mol:protein length:213 Myc box dependent interacting protein 1
PfamA27U 188-280 -9.140 21  PF15759; G3UM69.1/64-576; TMEM108 family
SCOP175 192-279 -6.610 23  d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
VFDB 196-279 -8.690 13  VFG0743 (gi:2865303) espD - EspD [Escherichia coli E2348/69] (VF0180)
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 COG0614 1-276 -7.070 13  [M] COG5434 Endopolygalacturonase
H.sapiens 15-104 -7.220 23  sp|Q9P2P6|STAR9_HUMAN StAR-related lipid transfer protein 9 OS=Homo sapiens GN=STARD9 PE=2 SV=2 (Range: 451-750)
HGM_OVER 6-202 -4.570 12  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
NEW_HUMAN_DOMAINS 39-170 -4.230 12  sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2 (Range: 576-746)
PDB0614 2-276 -6.980 1wmr_A mol:protein length:549 Isopullulanase
PfamA27U 7-176 -6.660 PF03548.10; LOLA_PSEPK/34-197; Outer membrane lipoprotein carrier protein LolA
SCOP175 126-275 -6.260 12  d1i5pa1 b.18.1.3 (A:473-633) delta-Endotoxin, C-terminal domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]}
VFDB 11-213 -6.030 15  VFG1978 (gi:32469828) virB10 - VirB10 [Campylobacter jejuni 81-176] (VF0325)
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 COG0614 21-146 -6.060 11  [R] COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding
H.sapiens 10-128 -8.180 16  sp|Q9NZM4|GSCR1_HUMAN Glioma tumor suppressor candidate region gene 1 protein OS=Homo sapiens GN=GLTSCR1 PE=1 SV=2 (Range: 1-300)
HGM_OVER 7-142 -3.790 13  PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
NEW_HUMAN_DOMAINS 4-112 -5.430 13  sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2 (Range: 45-246)
PDB0614 23-168 -8.550 16  2apl_A mol:protein length:157 hypothetical protein PG0816
PfamA27U 32-152 -7.030 15  PF07774.8; Q6FX97_CANGA/525-742; Protein of unknown function (DUF1620 topsan)
SCOP175 23-167 -8.810 16  d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816 {Porphyromonas gingivalis [TaxId: 837]}
VFDB 15-179 -5.670 15  VFG0087 (gi:15640841) tagD - tagD protein [Vibrio cholerae N16961]
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 COG0614 14-561 -20.000 11  [T] COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase)
130-570 -30.500 17  [T] COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
176-550 -40.200 18  [T] COG5002 Signal transduction histidine kinase
242-557 -42.400 22  [T] COG0642 Signal transduction histidine kinase
565-692 -24.700 16  [T] COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases
569-741 -23.000 17  [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
575-788 -22.600 10  [T] COG2198 FOG: HPt domain
H.sapiens 206-544 -23.400 13  sp|O14874|BCKD_HUMAN [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2
451-729 -36.200 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
HGM_OVER 282-584 -3.610 15  PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;
NEW_HUMAN_DOMAINS 568-689 -11.900 13  sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB0614 176-558 -38.200 18  4i5s_A mol:protein length:450 Putative histidine kinase CovS; VicK-like pro
300-557 -55.300 26  4q20_A mol:protein length:268 Sensor protein DivL
450-692 -45.000 19  2ayx_A mol:protein length:254 Sensor kinase protein rcsC
PfamA27U 295-354 -10.100 28  PF16926; L0JRI5.1/11-174; Archaeal 4TM region of histidine kinase
327-391 -18.700 30  PF00512.20; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
343-535 -16.600 11  PF10090.4; A4YN87_BRASO/37-219; Uncharacterized protein conserved in bacteria (DUF2328 topsan)
441-545 -21.500 28  PF02518.21; Q55527_SYNY3/482-624; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
570-682 -18.100 23  PF00072.19; AGMR_PSEAE/4-117; Response regulator receiver domain
SCOP175 295-393 -18.800 29  d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
395-548 -41.200 29  d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
564-692 -32.400 27  d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
566-739 -15.400 17  d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
677-788 -11.300 d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 183-801 -70.300 20  VFG2045 (gi:33592925) bvgS - virulence sensor protein [Bordetella pertussis Tohama I] (VF0336)
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 COG0614 2-432 -115.000 35  [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
H.sapiens 1-154 -20.900 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
1-223 -15.200 10  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
124-418 -13.400 16  sp|Q9NU22|MDN1_HUMAN Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2 (Range: 1051-1350)
HGM_OVER 4-282 -3.480 11  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
NEW_HUMAN_DOMAINS 1-152 -18.000 10  sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB0614 1-432 -114.000 38  4l4u_A mol:protein length:447 Transcriptional regulator (NtrC family)
PfamA27U 4-114 -25.500 25  PF00072.19; AGMR_PSEAE/4-117; Response regulator receiver domain
62-350 -15.000 14  PF08298.6; YEAG_ECOLI/19-380; PrkA AAA domain
127-293 -79.800 46  PF00158.21; Q8E8E7_SHEON/154-320; Sigma-54 interaction domain
388-429 -13.100 31  PF02954.14; Q52200_PSEPU/518-559; Bacterial regulatory protein, Fis family
SCOP175 3-126 -44.200 33  d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
127-373 -95.100 44  d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
373-432 -16.500 23  d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
VFDB 2-432 -116.000 38  VFG1214 (gi:15599743) pilR - two-component response regulator PilR [Pseudomonas aeruginosa PAO1] (VF0082)
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 COG0614 135-205 -6.400 26  [NU] COG4966 Tfp pilus assembly protein PilW
H.sapiens 131-212 -7.260 18  sp|Q96EK7|F120B_HUMAN Constitutive coactivator of peroxisome proliferator-activated receptor gamma OS=Homo sapiens GN=FAM120B PE=1 SV=1 (Range: 751-910)
HGM_OVER 133-212 -3.920 10  PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;
NEW_HUMAN_DOMAINS 1-63 -4.900 12  sp|Q12874|SF3A3_HUMAN Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1 (Range: 108-243)
PDB0614 83-176 -7.000 1lq1_A mol:protein length:120 Stage 0 sporulation protein A
PfamA27U 2-211 -55.100 14  PF09357.5; Q64WJ7_BACFR/81-300; RteC protein
SCOP175 83-177 -6.810 d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 135-205 -6.640 17  VFG1208 (gi:15599748) pilW - type 4 fimbrial biogenesis protein PilW [Pseudomonas aeruginosa PAO1] (VF0082)
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 COG0614 198-315 -6.150 [A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit
H.sapiens 193-313 -8.230 14  sp|Q9BQE4|SELS_HUMAN Selenoprotein S OS=Homo sapiens GN=SELS PE=1 SV=3
HGM_OVER 193-312 -4.110 PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
NEW_HUMAN_DOMAINS 36-70 -5.610 14  sp|O15014|ZN609_HUMAN Zinc finger protein 609 OS=Homo sapiens GN=ZNF609 PE=1 SV=2 (Range: 284-355)
PDB0614 33-86 -8.130 13  2m4l_A mol:protein length:99 hypothetical protein
PfamA27U 193-313 -7.480 13  PF06936.6; SELS_MOUSE/1-188; Selenoprotein S (SelS)
SCOP175 3-82 -7.450 d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 43-312 -4.980 VFG1281 (gi:21282247) sdrE - Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [Staphylococcus aureus MW2] (VF0019)
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 COG0614 21-124 -6.530 12  [K] COG3561 Phage anti-repressor protein
H.sapiens 16-203 -6.740 10  sp|Q9ULE6|PALD_HUMAN Paladin OS=Homo sapiens GN=PALD PE=1 SV=3 (Range: 1-300)
HGM_OVER 2-140 -4.310 12  PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF
NEW_HUMAN_DOMAINS 1-145 -7.040 15  sp|A1A4V9|CP093_HUMAN Coiled-coil domain-containing protein C16orf93 OS=Homo sapiens GN=C16orf93 PE=2 SV=1 (Range: 59-230)
PDB0614 16-146 -7.740 1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
PfamA27U 13-229 -6.090 10  PF00688.13; BMP2A_XENLA/10-269; TGF-beta propeptide
SCOP175 16-146 -7.740 d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 2-235 -5.730 12  VFG1348 (gi:22537329) cpsE - glycosyl transferase CpsE [Streptococcus agalactiae 2603V/R] (VF0274)
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 COG0614 3-77 -7.500 12  [B] KOG3844 Predicted component of NuA3 histone acetyltransferase complex
H.sapiens 3-106 -6.580 sp|P80188|NGAL_HUMAN(removed signalp:1-20) Neutrophil gelatinase-associated lipocalin OS=Homo sapiens GN=LCN2 PE=1 SV=2
HGM_OVER 1-97 -3.420 PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;
NEW_HUMAN_DOMAINS 4-43 -5.440 10  sp|Q9H0K6|PUS7L_HUMAN Pseudouridylate synthase 7 homolog-like protein OS=Homo sapiens GN=PUS7L PE=1 SV=1 (Range: 117-228)
PDB0614 52-104 -7.690 17  2vt1_B mol:protein length:93 SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAS
PfamA27U 7-84 -8.410 17  PF06857.6; CITD_ERWCT/2-87; Malonate decarboxylase delta subunit (MdcD)
SCOP175 1-106 -7.140 10  d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia ensiformis), Concanavalin B [TaxId: 3823]}
VFDB 1-104 -6.220 15  VFG1015 (gi:18462531) spa40 - component of Mxi-Spa secretion machinery [Shigella flexneri (serotype 2a) 301] (VF0118)
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 COG0614 43-151 -6.570 11  [P] COG2156 K+-transporting ATPase, c chain
H.sapiens 2-152 -8.380 11  sp|Q9Y2I7|FYV1_HUMAN 1-phosphatidylinositol-3-phosphate 5-kinase OS=Homo sapiens GN=PIKFYVE PE=1 SV=3 (Range: 901-1200)
HGM_OVER 48-148 -4.150 PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
NEW_HUMAN_DOMAINS 48-93 -5.570 13  sp|Q96LW4|CC111_HUMAN Coiled-coil domain-containing protein 111 OS=Homo sapiens GN=CCDC111 PE=1 SV=2 (Range: 33-112)
PDB0614 4-75 -6.700 3wmd_A mol:protein length:160 Probable monensin biosynthesis isomerase
PfamA27U 46-141 -6.750 PF09201.5; A7TFS7_VANPO/1-148; SRX
SCOP175 51-94 -6.740 14  d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-152 -6.020 VFG1411 (gi:15610124) leuD - leuD [Mycobacterium tuberculosis H37Rv]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.