FFAS03 list of results B.thetaiotaomicron / all

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 COG0113 185-205 -5.710 23 [J] COG3130 Ribosome modulation factor
PDB0113 1-205 -7.620 7 1sg3_A mol:protein length:349 Allantoicase
PfamA26U 44-126 -6.030 10 PF05048.8; A0B9A8_METTP/209-441; Periplasmic copper-binding protein (NosD)
SCOP175 4-143 -6.230 15 d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 COG0113 90-275 -5.970 12 [O] KOG1193 Arginyl-tRNA-protein transferase
PDB0113 46-214 -6.450 13 3mc0_B mol:protein length:239 Enterotoxin SEG
PfamA26U 17-211 -6.870 10 PF09365.5; A5GE98_GEOUR/13-224; Conserved hypothetical protein (DUF2461 topsan)
SCOP175 46-139 -7.450 11 d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]}
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 COG0113 31-117 -16.200 12 [L] COG0776 Bacterial nucleoid DNA-binding protein
PDB0113 2-258 -105.000 53 4fmr_A mol:protein length:265 uncharacterized hypothetical protein
PfamA26U 32-116 -12.500 11 PF00216.16; A1VGI8_DESVV/5-94; Bacterial DNA-binding protein
SCOP175 32-116 -15.300 16 d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 COG0113 34-185 -6.150 13 [S] COG5352 Uncharacterized protein conserved in bacteria
PDB0113 41-191 -7.860 13 3ltq_A mol:protein length:171 Interleukin-1 beta
PfamA26U 26-159 -7.030 17 PF08664.5; A8FHF3_BACP2/157-299; YcbB domain
SCOP175 64-209 -6.560 21 d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 COG0113 29-177 -82.300 18 [J] KOG1728 40S ribosomal protein S11
PDB0113 29-177 -85.600 16 3iz6_P mol:protein length:161 40S ribosomal protein S11 (S17p)
PfamA26U 108-176 -52.300 55 PF00366.15; RS17_THEMA/8-76; Ribosomal protein S17
SCOP175 104-177 -55.000 43 d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 COG0113 5-140 -7.210 19 [G] COG3732 Phosphotransferase system sorbitol-specific component IIBC
PDB0113 2-73 -9.500 19 1wwx_A mol:protein length:107 E74-like factor 5 ESE-2b
PfamA26U 4-54 -7.380 13 PF02950.12; CO16A_CONPL/1-79; Conotoxin
SCOP175 2-66 -7.380 21 d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 COG0113 45-122 -8.130 28 [K] COG5450 Transcription regulator of the Arc/MetJ class
PDB0113 47-80 -6.890 26 2gjv_A mol:protein length:175 putative cytoplasmic protein
PfamA26U 21-116 -6.930 13 PF06232.6; Q2HVW6_MEDTR/41-164; Embryo-specific protein 3, (ATS3)
SCOP175 24-79 -6.660 23 d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 COG0113 1-177 -32.200 10 [R] KOG4144 Arylalkylamine N-acetyltransferase
PDB0113 1-175 -34.400 13 2pr1_A mol:protein length:163 Uncharacterized N-acetyltransferase ylbP
PfamA26U 1-163 -25.000 8 PF02474.10; A5A959_9BRAD/14-210; Nodulation protein A (NodA)
26-157 -25.800 10 PF13673.1; Q7V9H3_PROMA/20-139; Acetyltransferase (GNAT) domain
SCOP175 1-177 -33.800 11 d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis aries) [TaxId: 9940]}
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 COG0113 1-343 -107.000 29 [P] COG0226 ABC-type phosphate transport system, periplasmic component
PDB0113 5-336 -109.000 24 1pc3_A mol:protein length:350 Phosphate-binding protein 1
PfamA26U 16-306 -15.300 11 PF12849.2; A1EKQ7_VIBCH/24-252; PBP superfamily domain
SCOP175 16-336 -110.000 24 d1pc3a_ c.94.1.1 (A:) Phosphate-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 COG0113 21-197 -5.920 19 [O] KOG1635 Peptide methionine sulfoxide reductase
PDB0113 72-343 -6.870 14 2ghi_A mol:protein length:260 transport protein
PfamA26U 62-174 -6.110 20 PF05836.7; CH16_DROME/29-138; Chorion protein S16
SCOP175 1-203 -6.840 18 d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 COG0113 182-276 -10.000 23 [K] KOG3248 Transcription factor TCF-4
PDB0113 195-278 -8.890 26 1mv3_A mol:protein length:213 Myc box dependent interacting protein 1
PfamA26U 198-279 -7.440 26 PF04998.12; RPB1_CAEEL/820-1416; RNA polymerase Rpb1, domain 5
SCOP175 193-282 -6.860 22 d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 COG0113 1-276 -11.100 10 [M] COG5434 Endopolygalacturonase
PDB0113 2-354 -14.400 9 1ru4_A mol:protein length:400 Pectate lyase
PfamA26U 2-347 -9.830 7 PF03718.8; P77813_ARTGO/20-620; Glycosyl hydrolase family 49
SCOP175 2-354 -14.400 9 d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 COG0113 1-162 -6.340 15 [H] COG0259 Pyridoxamine-phosphate oxidase
PDB0113 23-168 -7.880 16 2apl_A mol:protein length:157 hypothetical protein PG0816
PfamA26U 5-113 -5.800 13 PF02611.10; A8GL49_SERP5/44-265; CDP-diacylglycerol pyrophosphatase
SCOP175 23-167 -7.980 16 d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816 {Porphyromonas gingivalis [TaxId: 837]}
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 COG0113 120-570 -43.800 17 [T] COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
176-556 -49.400 20 [T] COG5002 Signal transduction histidine kinase
558-694 -31.700 15 [T] COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases
576-788 -29.300 10 [T] COG2198 FOG: HPt domain
PDB0113 181-550 -41.200 21 3a0r_A mol:protein length:349 Sensor protein
295-555 -65.300 25 4ew8_A mol:protein length:268 Sensor protein divL
414-801 -27.500 10 2zbk_B mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B
450-694 -57.200 19 2ayx_A mol:protein length:254 Sensor kinase protein rcsC
PfamA26U 302-538 -23.000 11 PF03882.9; MUKF_SHIFL/1-440; KicB killing factor
327-391 -24.600 30 PF00512.20; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
570-682 -28.200 29 PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain
SCOP175 295-394 -21.400 28 d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
395-548 -47.200 30 d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
563-694 -37.500 26 d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
567-750 -19.600 19 d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
675-788 -12.200 7 d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 COG0113 2-432 -120.000 35 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
PDB0113 2-363 -109.000 39 3dzd_A mol:protein length:368 Transcriptional regulator (NtrC family)
125-428 -103.000 43 1ojl_A mol:protein length:304 TRANSCRIPTIONAL REGULATORY PROTEIN ZRAR
PfamA26U 4-114 -41.900 30 PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain
5-350 -28.200 10 PF08298.6; YEAG_ECOLI/19-380; PrkA AAA domain
127-293 -81.000 46 PF00158.21; Q8E8E7_SHEON/154-320; Sigma-54 interaction domain
388-429 -12.800 31 PF02954.14; Q52200_PSEPU/518-559; Bacterial regulatory protein, Fis family
SCOP175 2-121 -44.900 28 d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
126-373 -97.800 44 d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
339-432 -25.700 27 d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 COG0113 1-212 -6.310 8 [Z] KOG3565 Cdc42-interacting protein CIP4
PDB0113 133-212 -7.120 15 1hfe_S mol:protein length:123 PROTEIN (FE-ONLY HYDROGENASE (E.C.1.18.99.1)
PfamA26U 2-211 -56.800 14 PF09357.5; Q64WJ7_BACFR/81-300; RteC protein
SCOP175 129-211 -5.630 13 d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 COG0113 33-234 -6.540 8 [P] COG3256 Nitric oxide reductase large subunit
PDB0113 33-234 -7.080 10 3ayf_A mol:protein length:800 Nitric oxide reductase
PfamA26U 193-313 -6.390 15 PF06936.6; SELS_MOUSE/1-188; Selenoprotein S (SelS)
SCOP175 9-81 -6.760 9 d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 COG0113 89-238 -5.660 8 [O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
PDB0113 1-146 -7.700 9 1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
PfamA26U 45-209 -7.140 11 PF12000.3; A4F0P0_9RHOB/24-194; Gkycosyl transferase family 4 group
SCOP175 1-146 -7.700 9 d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 COG0113 4-77 -7.230 12 [B] KOG3844 Predicted component of NuA3 histone acetyltransferase complex
PDB0113 52-104 -7.580 17 2vt1_B mol:protein length:93 SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAS
PfamA26U 7-84 -9.200 17 PF06857.6; CITD_ERWCT/2-87; Malonate decarboxylase delta subunit (MdcD)
SCOP175 52-104 -6.690 17 g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 COG0113 43-151 -6.290 10 [P] COG2156 K+-transporting ATPase, c chain
PDB0113 35-151 -7.490 8 1nfp_A mol:protein length:228 LUXF GENE PRODUCT
PfamA26U 46-89 -6.570 6 PF09201.5; A7TFS7_VANPO/1-148; SRX
SCOP175 35-151 -7.490 8 d1nfpa_ c.1.16.2 (A:) Non-fluorescent flavoprotein (luxF, FP390) {Photobacterium leiognathi [TaxId: 553611]}

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|29345411\|ref\|NP_808914.1\| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482]`	`205`	`COG0113`	`185-205`	`-5.710`	`23`	`[J] COG3130 Ribosome modulation factor`
			`PDB0113`	`1-205`	`-7.620`	`7`	`1sg3_A mol:protein length:349 Allantoicase`
			`PfamA26U`	`44-126`	`-6.030`	`10`	`PF05048.8; A0B9A8_METTP/209-441; Periplasmic copper-binding protein (NosD)`
			`SCOP175`	`4-143`	`-6.230`	`15`	`d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}`
2	`gi\|29345412\|ref\|NP_808915.1\|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482]`	`312`	`COG0113`	`90-275`	`-5.970`	`12`	`[O] KOG1193 Arginyl-tRNA-protein transferase`
			`PDB0113`	`46-214`	`-6.450`	`13`	`3mc0_B mol:protein length:239 Enterotoxin SEG`
			`PfamA26U`	`17-211`	`-6.870`	`10`	`PF09365.5; A5GE98_GEOUR/13-224; Conserved hypothetical protein (DUF2461 topsan)`
			`SCOP175`	`46-139`	`-7.450`	`11`	`d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]}`
3	`gi\|29345413\|ref\|NP_808916.1\| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482]`	`258`	`COG0113`	`31-117`	`-16.200`	`12`	`[L] COG0776 Bacterial nucleoid DNA-binding protein`
			`PDB0113`	`2-258`	`-105.000`	`53`	`4fmr_A mol:protein length:265 uncharacterized hypothetical protein`
			`PfamA26U`	`32-116`	`-12.500`	`11`	`PF00216.16; A1VGI8_DESVV/5-94; Bacterial DNA-binding protein`
			`SCOP175`	`32-116`	`-15.300`	`16`	`d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}`
4	`gi\|29345414\|ref\|NP_808917.1\| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482]`	`222`	`COG0113`	`34-185`	`-6.150`	`13`	`[S] COG5352 Uncharacterized protein conserved in bacteria`
			`PDB0113`	`41-191`	`-7.860`	`13`	`3ltq_A mol:protein length:171 Interleukin-1 beta`
			`PfamA26U`	`26-159`	`-7.030`	`17`	`PF08664.5; A8FHF3_BACP2/157-299; YcbB domain`
			`SCOP175`	`64-209`	`-6.560`	`21`	`d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}`
5	`gi\|29345415\|ref\|NP_808918.1\| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482]`	`178`	`COG0113`	`29-177`	`-82.300`	`18`	`[J] KOG1728 40S ribosomal protein S11`
			`PDB0113`	`29-177`	`-85.600`	`16`	`3iz6_P mol:protein length:161 40S ribosomal protein S11 (S17p)`
			`PfamA26U`	`108-176`	`-52.300`	`55`	`PF00366.15; RS17_THEMA/8-76; Ribosomal protein S17`
			`SCOP175`	`104-177`	`-55.000`	`43`	`d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}`
6	`gi\|29345416\|ref\|NP_808919.1\| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482]`	`148`	`COG0113`	`5-140`	`-7.210`	`19`	`[G] COG3732 Phosphotransferase system sorbitol-specific component IIBC`
			`PDB0113`	`2-73`	`-9.500`	`19`	`1wwx_A mol:protein length:107 E74-like factor 5 ESE-2b`
			`PfamA26U`	`4-54`	`-7.380`	`13`	`PF02950.12; CO16A_CONPL/1-79; Conotoxin`
			`SCOP175`	`2-66`	`-7.380`	`21`	`d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}`
7	`gi\|29345417\|ref\|NP_808920.1\| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482]`	`130`	`COG0113`	`45-122`	`-8.130`	`28`	`[K] COG5450 Transcription regulator of the Arc/MetJ class`
			`PDB0113`	`47-80`	`-6.890`	`26`	`2gjv_A mol:protein length:175 putative cytoplasmic protein`
			`PfamA26U`	`21-116`	`-6.930`	`13`	`PF06232.6; Q2HVW6_MEDTR/41-164; Embryo-specific protein 3, (ATS3)`
			`SCOP175`	`24-79`	`-6.660`	`23`	`d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}`
8	`gi\|29345418\|ref\|NP_808921.1\| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482]`	`181`	`COG0113`	`1-177`	`-32.200`	`10`	`[R] KOG4144 Arylalkylamine N-acetyltransferase`
			`PDB0113`	`1-175`	`-34.400`	`13`	`2pr1_A mol:protein length:163 Uncharacterized N-acetyltransferase ylbP`
			`PfamA26U`	`1-163`	`-25.000`	`8`	`PF02474.10; A5A959_9BRAD/14-210; Nodulation protein A (NodA)`
				`26-157`	`-25.800`	`10`	`PF13673.1; Q7V9H3_PROMA/20-139; Acetyltransferase (GNAT) domain`
			`SCOP175`	`1-177`	`-33.800`	`11`	`d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis aries) [TaxId: 9940]}`
9	`gi\|29345419\|ref\|NP_808922.1\|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482]`	`343`	`COG0113`	`1-343`	`-107.000`	`29`	`[P] COG0226 ABC-type phosphate transport system, periplasmic component`
			`PDB0113`	`5-336`	`-109.000`	`24`	`1pc3_A mol:protein length:350 Phosphate-binding protein 1`
			`PfamA26U`	`16-306`	`-15.300`	`11`	`PF12849.2; A1EKQ7_VIBCH/24-252; PBP superfamily domain`
			`SCOP175`	`16-336`	`-110.000`	`24`	`d1pc3a_ c.94.1.1 (A:) Phosphate-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}`
10	`gi\|29345420\|ref\|NP_808923.1\| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482]`	`357`	`COG0113`	`21-197`	`-5.920`	`19`	`[O] KOG1635 Peptide methionine sulfoxide reductase`
			`PDB0113`	`72-343`	`-6.870`	`14`	`2ghi_A mol:protein length:260 transport protein`
			`PfamA26U`	`62-174`	`-6.110`	`20`	`PF05836.7; CH16_DROME/29-138; Chorion protein S16`
			`SCOP175`	`1-203`	`-6.840`	`18`	`d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}`
11	`gi\|29345421\|ref\|NP_808924.1\| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482]`	`282`	`COG0113`	`182-276`	`-10.000`	`23`	`[K] KOG3248 Transcription factor TCF-4`
			`PDB0113`	`195-278`	`-8.890`	`26`	`1mv3_A mol:protein length:213 Myc box dependent interacting protein 1`
			`PfamA26U`	`198-279`	`-7.440`	`26`	`PF04998.12; RPB1_CAEEL/820-1416; RNA polymerase Rpb1, domain 5`
			`SCOP175`	`193-282`	`-6.860`	`22`	`d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}`
12	`gi\|29345422\|ref\|NP_808925.1\|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482]`	`354`	`COG0113`	`1-276`	`-11.100`	`10`	`[M] COG5434 Endopolygalacturonase`
			`PDB0113`	`2-354`	`-14.400`	`9`	`1ru4_A mol:protein length:400 Pectate lyase`
			`PfamA26U`	`2-347`	`-9.830`	`7`	`PF03718.8; P77813_ARTGO/20-620; Glycosyl hydrolase family 49`
			`SCOP175`	`2-354`	`-14.400`	`9`	`d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}`
13	`gi\|29345423\|ref\|NP_808926.1\| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482]`	`180`	`COG0113`	`1-162`	`-6.340`	`15`	`[H] COG0259 Pyridoxamine-phosphate oxidase`
			`PDB0113`	`23-168`	`-7.880`	`16`	`2apl_A mol:protein length:157 hypothetical protein PG0816`
			`PfamA26U`	`5-113`	`-5.800`	`13`	`PF02611.10; A8GL49_SERP5/44-265; CDP-diacylglycerol pyrophosphatase`
			`SCOP175`	`23-167`	`-7.980`	`16`	`d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816 {Porphyromonas gingivalis [TaxId: 837]}`
14	`gi\|29345424\|ref\|NP_808927.1\| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482]`	`807`	`COG0113`	`120-570`	`-43.800`	`17`	`[T] COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation`
				`176-556`	`-49.400`	`20`	`[T] COG5002 Signal transduction histidine kinase`
				`558-694`	`-31.700`	`15`	`[T] COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases`
				`576-788`	`-29.300`	`10`	`[T] COG2198 FOG: HPt domain`
			`PDB0113`	`181-550`	`-41.200`	`21`	`3a0r_A mol:protein length:349 Sensor protein`
				`295-555`	`-65.300`	`25`	`4ew8_A mol:protein length:268 Sensor protein divL`
				`414-801`	`-27.500`	`10`	`2zbk_B mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B`
				`450-694`	`-57.200`	`19`	`2ayx_A mol:protein length:254 Sensor kinase protein rcsC`
			`PfamA26U`	`302-538`	`-23.000`	`11`	`PF03882.9; MUKF_SHIFL/1-440; KicB killing factor`
				`327-391`	`-24.600`	`30`	`PF00512.20; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain`
				`570-682`	`-28.200`	`29`	`PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain`
			`SCOP175`	`295-394`	`-21.400`	`28`	`d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}`
				`395-548`	`-47.200`	`30`	`d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}`
				`563-694`	`-37.500`	`26`	`d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}`
				`567-750`	`-19.600`	`19`	`d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}`
				`675-788`	`-12.200`	`7`	`d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}`
15	`gi\|29345425\|ref\|NP_808928.1\| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482]`	`432`	`COG0113`	`2-432`	`-120.000`	`35`	`[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains`
			`PDB0113`	`2-363`	`-109.000`	`39`	`3dzd_A mol:protein length:368 Transcriptional regulator (NtrC family)`
				`125-428`	`-103.000`	`43`	`1ojl_A mol:protein length:304 TRANSCRIPTIONAL REGULATORY PROTEIN ZRAR`
			`PfamA26U`	`4-114`	`-41.900`	`30`	`PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain`
				`5-350`	`-28.200`	`10`	`PF08298.6; YEAG_ECOLI/19-380; PrkA AAA domain`
				`127-293`	`-81.000`	`46`	`PF00158.21; Q8E8E7_SHEON/154-320; Sigma-54 interaction domain`
				`388-429`	`-12.800`	`31`	`PF02954.14; Q52200_PSEPU/518-559; Bacterial regulatory protein, Fis family`
			`SCOP175`	`2-121`	`-44.900`	`28`	`d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}`
				`126-373`	`-97.800`	`44`	`d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}`
				`339-432`	`-25.700`	`27`	`d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}`
16	`gi\|29345426\|ref\|NP_808929.1\| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482]`	`212`	`COG0113`	`1-212`	`-6.310`	`8`	`[Z] KOG3565 Cdc42-interacting protein CIP4`
			`PDB0113`	`133-212`	`-7.120`	`15`	`1hfe_S mol:protein length:123 PROTEIN (FE-ONLY HYDROGENASE (E.C.1.18.99.1)`
			`PfamA26U`	`2-211`	`-56.800`	`14`	`PF09357.5; Q64WJ7_BACFR/81-300; RteC protein`
			`SCOP175`	`129-211`	`-5.630`	`13`	d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
17	`gi\|29345427\|ref\|NP_808930.1\| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482]`	`315`	`COG0113`	`33-234`	`-6.540`	`8`	`[P] COG3256 Nitric oxide reductase large subunit`
			`PDB0113`	`33-234`	`-7.080`	`10`	`3ayf_A mol:protein length:800 Nitric oxide reductase`
			`PfamA26U`	`193-313`	`-6.390`	`15`	`PF06936.6; SELS_MOUSE/1-188; Selenoprotein S (SelS)`
			`SCOP175`	`9-81`	`-6.760`	`9`	`d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}`
18	`gi\|29345428\|ref\|NP_808931.1\| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482]`	`238`	`COG0113`	`89-238`	`-5.660`	`8`	`[O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family`
			`PDB0113`	`1-146`	`-7.700`	`9`	`1ukf_A mol:protein length:188 Avirulence protein AVRPPH3`
			`PfamA26U`	`45-209`	`-7.140`	`11`	`PF12000.3; A4F0P0_9RHOB/24-194; Gkycosyl transferase family 4 group`
			`SCOP175`	`1-146`	`-7.700`	`9`	`d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}`
19	`gi\|29345429\|ref\|NP_808932.1\| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482]`	`106`	`COG0113`	`4-77`	`-7.230`	`12`	`[B] KOG3844 Predicted component of NuA3 histone acetyltransferase complex`
			`PDB0113`	`52-104`	`-7.580`	`17`	`2vt1_B mol:protein length:93 SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAS`
			`PfamA26U`	`7-84`	`-9.200`	`17`	`PF06857.6; CITD_ERWCT/2-87; Malonate decarboxylase delta subunit (MdcD)`
			`SCOP175`	`52-104`	`-6.690`	`17`	`g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}`
20	`gi\|29345430\|ref\|NP_808933.1\| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482]`	`152`	`COG0113`	`43-151`	`-6.290`	`10`	`[P] COG2156 K+-transporting ATPase, c chain`
			`PDB0113`	`35-151`	`-7.490`	`8`	`1nfp_A mol:protein length:228 LUXF GENE PRODUCT`
			`PfamA26U`	`46-89`	`-6.570`	`6`	`PF09201.5; A7TFS7_VANPO/1-148; SRX`
			`SCOP175`	`35-151`	`-7.490`	`8`	`d1nfpa_ c.1.16.2 (A:) Non-fluorescent flavoprotein (luxF, FP390) {Photobacterium leiognathi [TaxId: 553611]}`