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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 COG1214 185-205 -6.310 23  [J] COG3130 Ribosome modulation factor
H.sapiens 1-129 -10.900 13  sp|Q9BZQ2|CA014_HUMAN Uncharacterized protein C1orf14 OS=Homo sapiens GN=C1orf14 PE=1 SV=2 (Range: 301-600)
HGM_OVER 1-34 -4.660 17  HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;
JCSG1214 1-205 -38.900 25  GS13804A YP_210478.1 385141 Purified-2008-05-17
NEW_HUMAN_DOMAINS 13-64 -7.550 13  sp|O43734|CIKS_HUMAN Adapter protein CIKS OS=Homo sapiens GN=TRAF3IP2 PE=2 SV=3 (Range: 204-324)
PDB1214 1-89 -6.210 13  2o89_A mol:protein length:107 Thioredoxin
PfamA27U 2-203 -7.350 PF16318; D7IDS3.1/184-486; Domain of unknown function (DUF4957 topsan)
SCOP175 183-203 -6.200 16  d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
VFDB 1-130 -6.730 10  VFG0127 (gi:15598741) algG - outer membrane protein AlgE [Pseudomonas aeruginosa PAO1] (VF0091)
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 COG1214 92-286 -5.370 12  [O] KOG1193 Arginyl-tRNA-protein transferase
H.sapiens 53-307 -7.850 11  sp|Q8IXH8|CAD26_HUMAN(removed signalp:1-27) Cadherin-like protein 26 OS=Homo sapiens GN=CDH26 PE=2 SV=3 (Range: 1-300)
HGM_OVER 29-193 -4.290 11  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
JCSG1214 1-312 -141.000 100  GS14092A NP_808915.1 384930 Purified-2008-03-28
NEW_HUMAN_DOMAINS 36-193 -5.760 10  sp|Q53GL7|PAR10_HUMAN Poly [ADP-ribose] polymerase 10 OS=Homo sapiens GN=PARP10 PE=1 SV=2 (Range: 441-596)
PDB1214 2-169 -6.120 10  2hb0_A mol:protein length:369 CFA/I fimbrial subunit E
PfamA27U 103-205 -6.410 10  PF14344.1; A1SAL9_SHEAM/261-385; Domain of unknown function (DUF4397 topsan)
SCOP175 78-186 -5.900 11  d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]}
VFDB 27-172 -5.860 VFG0132 (gi:15598746) algF - alginate o-acetyltransferase AlgF [Pseudomonas aeruginosa PAO1] (VF0091)
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 COG1214 31-117 -12.700 12  [L] COG0776 Bacterial nucleoid DNA-binding protein
H.sapiens 38-216 -8.020 sp|Q15155|NOMO1_HUMAN(removed signalp:1-31) Nodal modulator 1 OS=Homo sapiens GN=NOMO1 PE=1 SV=5 (Range: 1-300)
HGM_OVER 33-216 -7.150 PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;
JCSG1214 1-258 -106.000 54  GS13689A YP_001299448.1 384418 PDB-2012-06-18
NEW_HUMAN_DOMAINS 144-216 -7.400 20  sp|Q9BZ71|PITM3_HUMAN Membrane-associated phosphatidylinositol transfer protein 3 OS=Homo sapiens GN=PITPNM3 PE=1 SV=2 (Range: 625-738)
PDB1214 2-258 -104.000 54  4fmr_A mol:protein length:265 uncharacterized hypothetical protein
PfamA27U 4-125 -51.000 42  PF14848.1; E4TDT7_RIEAD/3-124; DNA-binding domain
132-232 -40.200 39  PF14734.1; B3QWM9_CHLT3/130-226; Domain of unknown function (DUF4469 topsan) with IG-like fold
SCOP175 32-117 -12.800 16  d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
VFDB 13-222 -5.830 12  VFG0581 (gi:16767511) STM4261 - putative inner membrane protein [Salmonella enterica (serovar typhimurium) LT2]
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 COG1214 23-222 -6.860 21  [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain
H.sapiens 1-172 -7.920 11  sp|Q9UK41|VPS28_HUMAN Vacuolar protein sorting-associated protein 28 homolog OS=Homo sapiens GN=VPS28 PE=1 SV=1
HGM_OVER 15-199 -4.260 PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;
JCSG1214 27-159 -7.430 18  SC.A20850A BC015704 425647 Selected-2012-11-02
NEW_HUMAN_DOMAINS 101-164 -6.330 21  sp|Q15468|STIL_HUMAN SCL-interrupting locus protein OS=Homo sapiens GN=STIL PE=1 SV=2 (Range: 581-658)
PDB1214 26-209 -6.810 17  2fwy_A mol:protein length:256 Heat shock protein HSP 90-alpha
PfamA27U 23-222 -6.850 22  PF02574.11; METH_PSEPU/19-330; Homocysteine S-methyltransferase
SCOP175 64-209 -6.230 21  d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-148 -6.020 19  VFG0762 (gi:6009392) bfpL - BfpL [Escherichia coli B171] (VF0174)
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 COG1214 55-177 -59.400 26  [J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17
H.sapiens 95-178 -45.700 31  sp|Q9Y2R5|RT17_HUMAN 28S ribosomal protein S17, mitochondrial OS=Homo sapiens GN=MRPS17 PE=1 SV=1
HGM_OVER 1-100 -4.320 15  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
JCSG1214 103-177 -60.400 52  TM1491 TM1491 283348 Selected-2001-10-12
NEW_HUMAN_DOMAINS 1-24 -6.360 37  sp|Q6UXB0|F131A_HUMAN Protein FAM131A OS=Homo sapiens GN=FAM131A PE=2 SV=1 (Range: 22-106)
PDB1214 98-177 -60.600 50  1eg0_G mol:protein length:93 PROTEIN (S17 RIBOSOMAL PROTEIN)
PfamA27U 108-176 -53.400 55  PF00366.15; RS17_THEMA/8-76; Ribosomal protein S17
SCOP175 104-177 -55.200 43  d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}
VFDB 102-144 -6.930 16  VFG1212 (gi:15599752) pilE - type 4 fimbrial biogenesis protein PilE [Pseudomonas aeruginosa PAO1] (VF0082)
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 COG1214 4-99 -7.720 16  [P] KOG4404 Tandem pore domain K+ channel TASK3/THIK-1
H.sapiens 60-124 -7.870 23  sp|Q8TD84|DSCL1_HUMAN(removed signalp:1-18) Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2 (Range: 1501-1800)
HGM_OVER 1-49 -9.220 18  HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;
JCSG1214 1-146 -10.700 15  GS13255A NP_811971.1 384964 Purified-2010-09-20
NEW_HUMAN_DOMAINS 24-107 -6.480 19  sp|Q9H2S6|TNMD_HUMAN Tenomodulin OS=Homo sapiens GN=TNMD PE=2 SV=1 (Range: 243-317)
PDB1214 2-73 -8.050 19  1wwx_A mol:protein length:107 E74-like factor 5 ESE-2b
PfamA27U 1-118 -7.800 11  PF16408; D4IJ07.1/1-687; Domain of unknown function (DUF5016 topsan)
SCOP175 40-144 -6.930 17  d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}
VFDB 1-135 -7.080 15  VFG2066 (gi:15595278) PA0080 - hypothetical protein [Pseudomonas aeruginosa PAO1] (VF0334)
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 COG1214 45-122 -7.970 28  [K] COG5450 Transcription regulator of the Arc/MetJ class
H.sapiens 11-112 -8.620 23  sp|Q86XI8|CS068_HUMAN Uncharacterized protein C19orf68 OS=Homo sapiens GN=C19orf68 PE=1 SV=2 (Range: 301-600)
HGM_OVER 42-98 -5.230 15  HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;
JCSG1214 5-77 -8.760 30  SP2635D ZP_04008769.1 413841 Purified-2010-09-29
NEW_HUMAN_DOMAINS 10-85 -6.080 31  sp|Q96M86|DNHD1_HUMAN Dynein heavy chain domain-containing protein 1 OS=Homo sapiens GN=DNHD1 PE=1 SV=2 (Range: 69-158)
PDB1214 24-79 -6.540 23  1hru_A mol:protein length:188 YRDC GENE PRODUCT
PfamA27U 21-95 -6.430 16  PF06232.6; Q2HVW6_MEDTR/41-164; Embryo-specific protein 3, (ATS3)
SCOP175 24-79 -6.570 23  d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}
VFDB 8-116 -5.700 12  VFG0644 (gi:24114244) SF2980 - orf, conserved hypothetical protein [Shigella flexneri (serotype 2a) 301]
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 COG1214 8-166 -21.600 11  [R] KOG4144 Arylalkylamine N-acetyltransferase
H.sapiens 1-158 -21.900 16  sp|Q96EK6|GNA1_HUMAN Glucosamine 6-phosphate N-acetyltransferase OS=Homo sapiens GN=GNPNAT1 PE=1 SV=1
51-177 -22.000 11  sp|O60502|NCOAT_HUMAN Bifunctional protein NCOAT OS=Homo sapiens GN=MGEA5 PE=1 SV=2 (Range: 751-916)
HGM_OVER 14-176 -3.380 12  PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
JCSG1214 1-177 -24.200 18  FN2031G NP_988304.1 379585 Purified-2007-10-04
47-179 -24.400 22  FN12518A NP_599430.1 379202 Purified-2007-09-04
NEW_HUMAN_DOMAINS 27-105 -7.480 16  sp|Q8IXR9|CL056_HUMAN Uncharacterized protein C12orf56 OS=Homo sapiens GN=C12orf56 PE=2 SV=2 (Range: 1-108)
PDB1214 1-159 -25.500 16  2vez_A mol:protein length:190 PUTATIVE GLUCOSAMINE 6-PHOSPHATE ACETYLTRANSF
PfamA27U 15-157 -19.500 10  PF13673.1; Q7V9H3_PROMA/20-139; Acetyltransferase (GNAT) domain
51-163 -20.900 PF02474.10; A5A959_9BRAD/14-210; Nodulation protein A (NodA)
SCOP175 4-163 -24.700 d1m4ia_ d.108.1.1 (A:) Aminoglycoside 2`-N-acetyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 19-173 -15.700 10  VFG2112 (gi:52840358) vipF - VipF, N-terminal acetyltransferase, GNAT family [Legionella pneumophila Philadelphia 1] (VF0156)
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 COG1214 3-343 -119.000 29  [P] COG0226 ABC-type phosphate transport system, periplasmic component
H.sapiens 45-170 -6.100 sp|Q8N9R0|CP081_HUMAN Putative uncharacterized protein C16orf81 OS=Homo sapiens GN=C16orf81 PE=5 SV=2
HGM_OVER 36-331 -2.860 10  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
JCSG1214 9-343 -95.600 18  SP19114B NP_249380.1 413333 Selected-2009-11-12
NEW_HUMAN_DOMAINS 54-172 -5.850 12  sp|Q8TB96|TIP_HUMAN T-cell immunomodulatory protein OS=Homo sapiens GN=ITFG1 PE=1 SV=1 (Range: 448-565)
PDB1214 23-342 -115.000 33  1a40_A mol:protein length:321 PHOSPHATE-BINDING PERIPLASMIC PROTEIN PRECURS
PfamA27U 16-306 -12.500 11  PF12849.2; A1EKQ7_VIBCL/24-252; PBP superfamily domain
SCOP175 23-342 -115.000 33  d1ixha_ c.94.1.1 (A:) Phosphate-binding protein {Escherichia coli [TaxId: 562]}
VFDB 12-318 -8.210 15  VFG0839 (gi:15801498) paa - Paa [Escherichia coli O157:H7 EDL933] (VF0194)
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 COG1214 2-117 -5.330 21  [O] KOG0855 Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes
H.sapiens 196-354 -7.110 13  sp|Q13519|PNOC_HUMAN(removed signalp:1-19) Nociceptin OS=Homo sapiens GN=PNOC PE=1 SV=1
HGM_OVER 114-235 -3.150 18  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
JCSG1214 231-355 -6.690 14  SP17230A YP_001712982.1 406419 Purified-2010-09-20
NEW_HUMAN_DOMAINS 255-347 -6.430 tr|Q4VAR0|Q4VAR0_HUMAN CYP11B1 protein OS=Homo sapiens GN=CYP11B1 PE=2 SV=1 (Range: 40-124)
PDB1214 103-343 -7.260 16  2ghi_A mol:protein length:260 transport protein
PfamA27U 245-356 -9.460 20  PF14878.1; SPT6H_HUMAN/1050-1160; Death-like domain of SPT6
SCOP175 28-203 -6.290 19  d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}
VFDB 14-198 -5.280 16  VFG0616 (gi:24114945) iucB - IucB [Shigella flexneri (serotype 2a) 301] (VF0123)
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 COG1214 214-270 -9.590 20  [R] KOG2896 UV radiation resistance associated protein
H.sapiens 132-279 -9.720 12  sp|Q5U4P2|ASPH1_HUMAN Aspartate beta-hydroxylase domain-containing protein 1 OS=Homo sapiens GN=ASPHD1 PE=1 SV=3
205-277 -11.100 15  sp|O43147|SGSM2_HUMAN Small G protein signaling modulator 2 OS=Homo sapiens GN=SGSM2 PE=1 SV=4 (Range: 601-900)
HGM_OVER 193-280 -4.860 13  PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
JCSG1214 217-272 -8.610 28  RF2003F.GATA4 BC105108 421237 Purified-2011-02-13
NEW_HUMAN_DOMAINS 192-278 -8.100 20  sp|Q86WV6|TM173_HUMAN Transmembrane protein 173 OS=Homo sapiens GN=TMEM173 PE=1 SV=1 (Range: 110-331)
PDB1214 195-278 -9.240 26  1mv3_A mol:protein length:213 Myc box dependent interacting protein 1
PfamA27U 198-280 -10.000 24  PF15759; G3UM69.1/64-576; TMEM108 family
SCOP175 188-279 -6.650 22  d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
VFDB 216-277 -7.140 14  VFG0966 (gi:15675005) hylP2 - hyaluronidase - phage associated [Streptococcus pyogenes SF370] (VF0246)
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 COG1214 1-276 -9.060 13  [M] COG5434 Endopolygalacturonase
H.sapiens 15-147 -7.580 18  sp|Q9P2P6|STAR9_HUMAN StAR-related lipid transfer protein 9 OS=Homo sapiens GN=STARD9 PE=2 SV=2 (Range: 451-750)
HGM_OVER 20-202 -4.400 11  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
JCSG1214 1-354 -94.000 100  CM8499A NP_808925.1 368537 Purified-2010-09-29
NEW_HUMAN_DOMAINS 34-142 -4.560 23  sp|Q53EP0|FND3B_HUMAN Fibronectin type III domain-containing protein 3B OS=Homo sapiens GN=FNDC3B PE=1 SV=2 (Range: 1-129)
PDB1214 1-290 -8.020 10  4mr0_A mol:protein length:648 Plasmin and fibronectin-binding protein A
PfamA27U 30-176 -6.830 PF03548.10; LOLA_PSEPK/34-197; Outer membrane lipoprotein carrier protein LolA
SCOP175 46-202 -6.820 10  d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 11-304 -6.910 VFG0127 (gi:15598741) algG - outer membrane protein AlgE [Pseudomonas aeruginosa PAO1] (VF0091)
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 COG1214 7-136 -6.660 12  [O] KOG0425 Ubiquitin-protein ligase
H.sapiens 1-156 -7.400 sp|Q3ZCN5|CL064_HUMAN Uncharacterized protein C12orf64 OS=Homo sapiens GN=C12orf64 PE=2 SV=4 (Range: 1-300)
HGM_OVER 2-131 -4.380 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG1214 1-102 -6.560 10  TM1621 TM1621 283478 PDB-2003-02-12
NEW_HUMAN_DOMAINS 131-167 -5.630 21  sp|Q5T447|HECD3_HUMAN E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1 (Range: 89-213)
PDB1214 19-132 -9.100 13  3ivp_A mol:protein length:126 Putative transposon-related DNA-binding prote
PfamA27U 32-180 -6.920 15  PF07774.8; Q6FX97_CANGA/525-742; Protein of unknown function (DUF1620 topsan)
SCOP175 23-167 -9.290 16  d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816 {Porphyromonas gingivalis [TaxId: 837]}
VFDB 1-55 -6.230 21  VFG1135 (gi:15641805) VC1802 - hypothetical protein [Vibrio cholerae N16961]
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 COG1214 14-567 -20.900 10  [T] COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase)
170-570 -30.800 18  [T] COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
207-555 -42.900 22  [T] COG5002 Signal transduction histidine kinase
279-557 -43.900 20  [T] COG0642 Signal transduction histidine kinase
558-692 -28.000 15  [T] COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases
576-788 -26.600 10  [T] COG2198 FOG: HPt domain
H.sapiens 218-419 -11.000 10  sp|Q9NXG0|CNTLN_HUMAN Centlein OS=Homo sapiens GN=CNTLN PE=2 SV=5 (Range: 1201-1405)
248-544 -20.400 14  sp|Q16654|PDK4_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1
308-544 -27.300 16  sp|O14874|BCKD_HUMAN [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2
452-729 -39.100 12  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
482-800 -11.200 13  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
HGM_OVER 428-633 -2.840 16  PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
JCSG1214 169-554 -55.200 21  GD0400C YP_001302916.1 388237 Selected-2007-09-21
287-795 -58.200 18  SP0400D NP_813048.1 409092 Selected-2009-11-12
309-697 -74.900 20  C.LS21380A NP_421956.1 430524 Selected-2011-09-02
NEW_HUMAN_DOMAINS 568-724 -16.900 10  sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB1214 207-554 -40.600 19  4i5s_A mol:protein length:450 Putative histidine kinase CovS; VicK-like pro
302-555 -59.800 26  4q20_A mol:protein length:268 Sensor protein DivL
450-692 -51.000 19  2ayx_A mol:protein length:254 Sensor kinase protein rcsC
PfamA27U 285-354 -9.710 25  PF16926; L0JRI5.1/11-174; Archaeal 4TM region of histidine kinase
327-391 -23.700 30  PF00512.20; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
343-537 -23.400 12  PF10090.4; A4YN87_BRASO/37-219; Uncharacterized protein conserved in bacteria (DUF2328 topsan)
570-682 -19.300 23  PF00072.19; AGMR_PSEAE/4-117; Response regulator receiver domain
SCOP175 295-394 -20.400 29  d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
395-548 -42.000 30  d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
563-692 -35.700 27  d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
567-739 -16.800 17  d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
664-788 -16.400 d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 185-550 -36.100 14  VFG1213 (gi:15599742) pilS - two-component sensor PilS [Pseudomonas aeruginosa PAO1] (VF0082)
228-792 -89.900 18  VFG0493 (gi:16764742) ssrA - Secretion system regulator:Sensor component [Salmonella enterica (serovar typhimurium) LT2]
294-803 -95.500 22  VFG2045 (gi:33592925) bvgS - virulence sensor protein [Bordetella pertussis Tohama I] (VF0336)
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 COG1214 2-432 -114.000 35  [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
H.sapiens 1-154 -22.000 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
1-223 -16.300 10  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
112-346 -13.500 13  sp|Q9NU22|MDN1_HUMAN Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2 (Range: 1651-1950)
130-430 -12.300 12  sp|A3KMH1|K0564_HUMAN Uncharacterized protein KIAA0564 OS=Homo sapiens GN=KIAA0564 PE=1 SV=2 (Range: 751-1050)
HGM_OVER 4-282 -3.420 10  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
JCSG1214 3-262 -47.500 12  GD14144A YP_796118.1 387985 Crystal|NMR-2008-05-01
78-432 -79.000 30  GD6553A YP_001086868.1 388070 Selected-2007-09-21
125-432 -83.200 19  TM1580 TM1580 283437 Purified-2001-11-20
NEW_HUMAN_DOMAINS 1-126 -21.800 10  sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB1214 2-432 -119.000 39  4l4u_A mol:protein length:447 Transcriptional regulator (NtrC family)
PfamA27U 3-319 -16.000 10  PF07688.7; KAIA_SYNY3/5-288; KaiA domain
4-114 -26.100 25  PF00072.19; AGMR_PSEAE/4-117; Response regulator receiver domain
62-350 -15.500 13  PF08298.6; YEAG_ECOLI/19-380; PrkA AAA domain
127-293 -81.800 46  PF00158.21; Q8E8E7_SHEON/154-320; Sigma-54 interaction domain
388-429 -13.000 31  PF02954.14; Q52200_PSEPU/518-559; Bacterial regulatory protein, Fis family
SCOP175 3-126 -44.900 33  d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
127-373 -99.300 44  d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
373-432 -16.600 23  d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
VFDB 2-432 -117.000 38  VFG1214 (gi:15599743) pilR - two-component response regulator PilR [Pseudomonas aeruginosa PAO1] (VF0082)
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 COG1214 135-205 -7.290 26  [NU] COG4966 Tfp pilus assembly protein PilW
H.sapiens 131-212 -7.930 15  sp|Q9NZB2|F120A_HUMAN Constitutive coactivator of PPAR-gamma-like protein 1 OS=Homo sapiens GN=FAM120A PE=1 SV=2 (Range: 751-1050)
HGM_OVER 133-209 -6.290 HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;
JCSG1214 128-205 -6.780 PI20572B NP_289377.1 420826 Selected-2010-05-19
NEW_HUMAN_DOMAINS 131-204 -4.670 13  sp|A5D8W1|CG063_HUMAN Uncharacterized protein C7orf63 OS=Homo sapiens GN=C7orf63 PE=2 SV=3 (Range: 30-127)
PDB1214 133-212 -7.250 15  1hfe_S mol:protein length:123 PROTEIN (FE-ONLY HYDROGENASE (E.C.1.18.99.1)
PfamA27U 2-211 -55.100 11  PF09357.5; Q64WJ7_BACFR/81-300; RteC protein
SCOP175 140-211 -5.660 12  d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 136-205 -7.420 17  VFG1208 (gi:15599748) pilW - type 4 fimbrial biogenesis protein PilW [Pseudomonas aeruginosa PAO1] (VF0082)
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 COG1214 28-236 -6.710 12  [Q] KOG1599 Uricase (urate oxidase)
H.sapiens 223-312 -8.200 13  sp|Q76M96|CCD80_HUMAN(removed signalp:1-21) Coiled-coil domain-containing protein 80 OS=Homo sapiens GN=CCDC80 PE=1 SV=1 (Range: 451-750)
HGM_OVER 189-310 -3.840 PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
JCSG1214 233-312 -6.640 10  SP17492A NP_390330.1 406727 Purified-2010-09-29
NEW_HUMAN_DOMAINS 36-70 -6.200 14  sp|O15014|ZN609_HUMAN Zinc finger protein 609 OS=Homo sapiens GN=ZNF609 PE=1 SV=2 (Range: 284-355)
PDB1214 2-81 -8.430 1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
PfamA27U 193-313 -8.090 13  PF06936.6; SELS_MOUSE/1-188; Selenoprotein S (SelS)
SCOP175 2-81 -8.430 d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 200-312 -4.350 VFG1279 (gi:21282245) sdrC - Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [Staphylococcus aureus MW2] (VF0019)
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 COG1214 7-193 -5.310 10  [L] KOG3041 Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family
H.sapiens 24-216 -6.050 11  sp|P28370|SMCA1_HUMAN Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2 (Range: 451-750)
HGM_OVER 98-185 -4.450 10  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
JCSG1214 3-216 -6.800 SP17156A ZP_02067246.1 408589 Purified-2010-09-29
NEW_HUMAN_DOMAINS 1-145 -7.360 16  sp|A1A4V9|CP093_HUMAN Coiled-coil domain-containing protein C16orf93 OS=Homo sapiens GN=C16orf93 PE=2 SV=1 (Range: 59-230)
PDB1214 1-146 -8.340 10  1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
PfamA27U 13-229 -6.460 10  PF00688.13; BMP2A_XENLA/10-269; TGF-beta propeptide
SCOP175 1-146 -8.340 10  d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 1-238 -5.480 10  VFG1348 (gi:22537329) cpsE - glycosyl transferase CpsE [Streptococcus agalactiae 2603V/R] (VF0274)
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 COG1214 3-77 -7.740 12  [B] KOG3844 Predicted component of NuA3 histone acetyltransferase complex
H.sapiens 1-104 -5.940 11  sp|P08183|MDR1_HUMAN Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3 (Range: 151-450)
HGM_OVER 10-81 -3.730 PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
JCSG1214 1-67 -8.070 10  PU6338A SARO_25NOV03_CONTIG30_REVISED_GENE2773 381800 Crystal|NMR-2009-04-11
NEW_HUMAN_DOMAINS 7-103 -5.340 sp|Q8TAP6|CEP76_HUMAN Centrosomal protein of 76 kDa OS=Homo sapiens GN=CEP76 PE=1 SV=1 (Range: 413-659)
PDB1214 3-77 -7.830 12  4nhk_A mol:protein length:647 PKHD-type hydroxylase TPA1
PfamA27U 7-84 -8.910 17  PF06857.6; CITD_ERWCT/2-87; Malonate decarboxylase delta subunit (MdcD)
SCOP175 1-106 -7.330 10  d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia ensiformis), Concanavalin B [TaxId: 3823]}
VFDB 1-104 -5.430 10  VFG0548 (gi:16766193) spaS - surface presentation of antigens; secretory proteins [Salmonella enterica (serovar typhimurium) LT2] (VF0116)
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 COG1214 43-150 -6.410 11  [P] COG2156 K+-transporting ATPase, c chain
H.sapiens 42-80 -7.060 10  sp|Q86XH1|IQCA1_HUMAN IQ and AAA domain-containing protein 1 OS=Homo sapiens GN=IQCA1 PE=2 SV=1 (Range: 301-600)
HGM_OVER 35-90 -4.780 PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
JCSG1214 43-152 -8.500 10  RH20226A NP_281800.1 415790 Selected-2009-12-04
NEW_HUMAN_DOMAINS 48-93 -5.470 13  sp|Q96LW4|CC111_HUMAN Coiled-coil domain-containing protein 111 OS=Homo sapiens GN=CCDC111 PE=1 SV=2 (Range: 33-112)
PDB1214 46-89 -6.930 15  1nrj_A mol:protein length:158 Signal recognition particle receptor alpha su
PfamA27U 43-150 -6.500 11  PF02669.10; ATKC_ECOLI/1-188; K+-transporting ATPase, c chain
SCOP175 46-89 -6.950 15  d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 1-152 -5.870 VFG1411 (gi:15610124) leuD - leuD [Mycobacterium tuberculosis H37Rv]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Godzik A. Search for a new description of protein topology and local structure. Proc Int Conf Intell Syst Mol Biol. 2000;8:211-7.