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# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1 338 COG0614 283-318 -6.980 13  [S] COG2991 Uncharacterized protein conserved in bacteria
H.sapiens 1-338 -150.000 97  sp|P18464|1B51_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-51 alpha chain OS=Homo sapiens GN=HLA-B PE=1 SV=1
HGM_OVER 275-338 -5.460 20  HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
NEW_HUMAN_DOMAINS 4-64 -7.800 18  sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=2 SV=2 (Range: 334-411)
PDB0614 1-338 -128.000 64  1s7q_A mol:protein length:348 H-2 class I histocompatibility antigen, K-B a
PfamA27U 1-179 -91.500 79  PF00129.13; 1A01_SAGOE/25-203; Class I Histocompatibility antigen, domains alpha 1 and 2
43-311 -11.200 13  PF02124.10; Q8JMQ7_9ALPH/202-414; Marek`s disease glycoprotein A
195-271 -23.300 27  PF07654.10; IGHG3_MOUSE/234-320; Immunoglobulin C1-set domain
SCOP175 1-181 -90.500 88  d1k5na2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Human (Homo sapiens), HLA-B27 [TaxId: 9606]}
182-276 -59.700 100  d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 272-338 -5.410 13  VFG1209 (gi:15599749) pilX - type 4 fimbrial biogenesis protein PilX [Pseudomonas aeruginosa PAO1] (VF0082)
2 sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3 422 COG0614 2-422 -101.000 33  [R] KOG3656 FOG: 7 transmembrane receptor
H.sapiens 4-422 -120.000 28  sp|P08913|ADA2A_HUMAN Alpha-2A adrenergic receptor OS=Homo sapiens GN=ADRA2A PE=1 SV=3
HGM_OVER 1-207 -6.150 11  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
NEW_HUMAN_DOMAINS 60-155 -6.220 19  sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2 (Range: 1761-1892)
PDB0614 17-421 -119.000 35  4iaq_A mol:protein length:403 Chimera protein of human 5-hydroxytryptamine
PfamA27U 36-422 -52.500 10  PF04789.10; E3LU62_CAERE/637-942; Protein of unknown function (DUF621 topsan)
53-400 -98.200 37  PF00001.16; HRH2_CANFA/35-288; 7 transmembrane receptor (rhodopsin family)
SCOP175 1-417 -67.600 18  d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
VFDB 53-241 -9.280 19  VFG1856 (gi:52841094) ccmC - heme exporter protein CcmC [Legionella pneumophila Philadelphia 1] (VF0292)
3 sp|Q15758|AAAT_HUMAN Neutral amino acid transporter B(0) OS=Homo sapiens GN=SLC1A5 PE=1 SV=2 541 COG0614 50-506 -85.900 21  [R] COG1823 Predicted Na+/dicarboxylate symporter
H.sapiens 14-541 -132.000 57  sp|P43007|SATT_HUMAN Neutral amino acid transporter A OS=Homo sapiens GN=SLC1A4 PE=1 SV=1
33-528 -132.000 43  sp|P43003|EAA1_HUMAN Excitatory amino acid transporter 1 OS=Homo sapiens GN=SLC1A3 PE=1 SV=1
HGM_OVER 244-537 -5.760 12  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
NEW_HUMAN_DOMAINS 382-492 -5.960 14  sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4 (Range: 2558-2677)
PDB0614 43-497 -98.300 28  4ky0_A mol:protein length:431 Proton/glutamate symporter, SDF family
PfamA27U 54-485 -35.900 20  PF00375.13; A4CFF6_9GAMM/3-377; Sodium:dicarboxylate symporter family
SCOP175 54-486 -93.300 30  d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 389-454 -5.140 16  VFG1135 (gi:15641805) VC1802 - hypothetical protein [Vibrio cholerae N16961]
4 sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 599 COG0614 1-599 -149.000 69  [A] KOG0063 RNAse L inhibitor, ABC superfamily
H.sapiens 68-289 -29.500 19  sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=2 (Range: 4651-4950)
216-469 -27.800 18  sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 (Range: 451-750)
318-596 -25.800 16  sp|Q8N139|ABCA6_HUMAN ATP-binding cassette sub-family A member 6 OS=Homo sapiens GN=ABCA6 PE=1 SV=2 (Range: 451-750)
322-541 -30.700 17  sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 (Range: 601-845)
HGM_OVER 1-65 -5.510 23  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 13-65 -10.300 23  sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3 (Range: 4233-4375)
PDB0614 1-599 -149.000 68  3j16_B mol:protein length:608 Rli1p
PfamA27U 6-37 -21.200 75  PF04068.10; A3FQC8_CRYPI/19-50; Possible Fer4-like domain in RNase L inhibitor, RLI
16-68 -15.400 29  PF12838.2; A4YE92_METS5/577-626; 4Fe-4S dicluster domain
18-110 -14.200 17  PF13247.1; Q9L353_9BACL/159-257; 4Fe-4S dicluster domain
94-396 -12.500 12  PF07088.6; GVPD1_HALSA/23-536; GvpD gas vesicle protein
362-490 -25.400 24  PF00005.22; YTFR_ECOLI/25-174; ABC transporter
370-525 -13.900 13  PF13401.1; B2UJB3_RALPJ/42-210; AAA domain
SCOP175 8-82 -23.800 24  d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}
68-326 -32.700 18  d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}
100-312 -33.900 24  d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}
347-538 -34.600 16  d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
352-588 -24.600 21  d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 10-133 -13.400 19  VFG0486 (gi:16764735) ttrB - Tetrathionate reductase complex, subunit B [Salmonella enterica (serovar typhimurium) LT2]
68-581 -38.300 17  VFG1653 (gi:28316233) iroC - ABC transport protein [Escherichia coli 536]
5 sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2 87 COG0614 1-86 -62.600 48  [I] COG4281 Acyl-CoA-binding protein
H.sapiens 3-87 -61.900 62  sp|Q8N6N7|ACBD7_HUMAN Acyl-CoA-binding domain-containing protein 7 OS=Homo sapiens GN=ACBD7 PE=1 SV=1
HGM_OVER 1-59 -3.140 15  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
NEW_HUMAN_DOMAINS 5-58 -7.000 28  sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2 (Range: 1-52)
PDB0614 1-87 -64.500 100  2cb8_A mol:protein length:87 ACYL-COA-BINDING PROTEIN
PfamA27U 2-85 -58.000 50  PF00887.14; Q4PAA4_USTMA/3-91; Acyl CoA binding protein
SCOP175 2-87 -62.600 93  d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]}
VFDB 17-76 -6.300 20  VFG0206 (gi:15596908) hypothetical protein [Pseudomonas aeruginosa PAO1] (VF0083)
6 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 1-300) 300 COG0614 1-300 -91.300 35  [IQ] KOG0135 Pristanoyl-CoA/acyl-CoA oxidase
H.sapiens 1-300 -111.000 30  sp|Q99424|ACOX2_HUMAN Peroxisomal acyl-coenzyme A oxidase 2 OS=Homo sapiens GN=ACOX2 PE=1 SV=1 (Range: 1-300)
HGM_OVER 139-287 -3.430 16  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
NEW_HUMAN_DOMAINS 155-219 -4.710 20  sp|Q6P387|CP046_HUMAN Uncharacterized protein C16orf46 OS=Homo sapiens GN=C16orf46 PE=2 SV=2 (Range: 27-108)
PDB0614 18-300 -90.000 29  1is2_A mol:protein length:661 acyl-CoA oxidase
PfamA27U 31-153 -28.500 10  PF14749.1; F1R3V9_DANRE/15-133; Acyl-coenzyme A oxidase N-terminal
SCOP175 17-289 -111.000 35  d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 174-287 -5.650 17  VFG0351 (gi:16121585) psaA - pH 6 antigen precursor (antigen 4) (adhesin) [Yersinia pestis CO92] (VF0134)
7 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 151-450) 300 COG0614 1-300 -110.000 43  [IQ] KOG0135 Pristanoyl-CoA/acyl-CoA oxidase
H.sapiens 6-300 -132.000 38  sp|Q99424|ACOX2_HUMAN Peroxisomal acyl-coenzyme A oxidase 2 OS=Homo sapiens GN=ACOX2 PE=1 SV=1 (Range: 151-450)
HGM_OVER 15-227 -3.700 15  PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
NEW_HUMAN_DOMAINS 88-216 -5.570 11  sp|A4D0S4|LAMB4_HUMAN Laminin subunit beta-4 OS=Homo sapiens GN=LAMB4 PE=2 SV=1 (Range: 585-721)
PDB0614 1-300 -108.000 39  1is2_A mol:protein length:661 acyl-CoA oxidase
PfamA27U 144-300 -17.400 17  PF00441.19; O33331_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
SCOP175 1-140 -78.200 50  d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
148-300 -70.400 38  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 24-137 -5.100 17  VFG0351 (gi:16121585) psaA - pH 6 antigen precursor (antigen 4) (adhesin) [Yersinia pestis CO92] (VF0134)
8 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 301-600) 300 COG0614 1-300 -77.600 27  [I] KOG0136 Acyl-CoA oxidase
H.sapiens 11-300 -110.000 26  sp|Q99424|ACOX2_HUMAN Peroxisomal acyl-coenzyme A oxidase 2 OS=Homo sapiens GN=ACOX2 PE=1 SV=1 (Range: 301-600)
HGM_OVER 20-176 -4.390 12  PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
NEW_HUMAN_DOMAINS 28-156 -6.590 12  sp|Q9HA72|CAHM2_HUMAN Calcium homeostasis modulator protein 2 OS=Homo sapiens GN=CALHM2 PE=2 SV=1 (Range: 206-323)
PDB0614 1-300 -77.500 30  1w07_A mol:protein length:659 ACYL-COA OXIDASE
PfamA27U 1-166 -25.500 18  PF00441.19; O33331_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
210-300 -23.700 15  PF01756.14; O62140_CAEEL/484-669; Acyl-CoA oxidase
SCOP175 1-187 -91.800 36  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
193-300 -23.500 20  d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 3-157 -6.260 18  VFG1788 (gi:15088612) orf5 - unknown [Yersinia enterocolitica A127]
9 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 451-700) 250 COG0614 1-250 -55.600 23  [I] KOG0136 Acyl-CoA oxidase
H.sapiens 11-250 -80.700 23  sp|Q99424|ACOX2_HUMAN Peroxisomal acyl-coenzyme A oxidase 2 OS=Homo sapiens GN=ACOX2 PE=1 SV=1 (Range: 451-681)
HGM_OVER 109-207 -4.320 15  HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 117-211 -6.390 12  sp|Q9NRR1|CYTL1_HUMAN Cytokine-like protein 1 OS=Homo sapiens GN=CYTL1 PE=1 SV=1 (Range: 23-136)
PDB0614 1-250 -57.400 23  2fon_A mol:protein length:683 peroxisomal acyl-CoA oxidase 1A
PfamA27U 60-245 -69.200 17  PF01756.14; O62140_CAEEL/484-669; Acyl-CoA oxidase
SCOP175 1-42 -13.500 23  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
43-250 -70.300 23  d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 1-193 -6.140 12  VFG0072 (gi:16802246) prfA - listeriolysin positive regulatory protein [Listeria monocytogenes (serovar 1/2a) EGD-e] (VF0062)
10 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 1-300) 300 COG0614 3-300 -64.200 25  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
H.sapiens 10-300 -117.000 40  sp|Q9BZ11|ADA33_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 33 OS=Homo sapiens GN=ADAM33 PE=1 SV=2 (Range: 1-300)
HGM_OVER 100-245 -4.890 12  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
NEW_HUMAN_DOMAINS 62-156 -6.070 13  sp|Q8N2E2|VWDE_HUMAN von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4 (Range: 21-163)
PDB0614 26-300 -39.500 3p24_A mol:protein length:397 BFT-3
179-300 -62.000 49  1r54_A mol:protein length:214 ADAM 33
PfamA27U 18-137 -44.900 28  PF01562.14; ATS3_HUMAN/42-201; Reprolysin family propeptide
185-300 -56.900 24  PF01421.14; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
SCOP175 183-300 -61.400 50  d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 91-291 -5.360 13  VFG2382 (gi:15611006) Rv3870 - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] (VF0315)
11 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 151-450) 300 COG0614 3-300 -73.000 31  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
H.sapiens 7-300 -123.000 51  sp|Q9BZ11|ADA33_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 33 OS=Homo sapiens GN=ADAM33 PE=1 SV=2 (Range: 151-450)
HGM_OVER 35-182 -4.110 PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]
NEW_HUMAN_DOMAINS 2-290 -9.120 15  sp|Q9BXP8|PAPP2_HUMAN Pappalysin-2 OS=Homo sapiens GN=PAPPA2 PE=1 SV=4 (Range: 838-1362)
PDB0614 20-300 -107.000 39  2ero_A mol:protein length:427 vascular apoptosis-inducing protein 1
PfamA27U 2-221 -15.900 10  PF12388.3; A8UHM7_9FLAO/86-299; Dual-action HEIGH metallo-peptidase
35-233 -80.200 24  PF01421.14; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
250-300 -25.100 45  PF00200.18; ADA32_HUMAN/400-477; Disintegrin
SCOP175 33-234 -90.700 54  d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
252-300 -22.600 60  d1j2la_ g.20.1.1 (A:) Flavoridin (triflavin) {Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]}
VFDB 42-219 -6.720 12  VFG1115 (gi:15641785) nanK - ROK family protein [Vibrio cholerae N16961]
12 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 301-600) 300 COG0614 2-299 -77.200 35  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
H.sapiens 4-300 -99.600 53  sp|Q9BZ11|ADA33_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 33 OS=Homo sapiens GN=ADAM33 PE=1 SV=2 (Range: 301-600)
HGM_OVER 140-206 -7.820 18  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
NEW_HUMAN_DOMAINS 75-281 -8.600 15  sp|Q9BXP8|PAPP2_HUMAN Pappalysin-2 OS=Homo sapiens GN=PAPPA2 PE=1 SV=4 (Range: 838-1362)
PDB0614 1-259 -84.000 40  2e3x_A mol:protein length:427 Coagulation factor X-activating enzyme heavy
1-299 -81.900 36  3g5c_A mol:protein length:510 ADAM 22
PfamA27U 1-83 -25.700 25  PF01421.14; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
100-175 -35.300 42  PF00200.18; ADA32_HUMAN/400-477; Disintegrin
177-300 -41.600 24  PF08516.7; ADAM2_MACFA/473-589; ADAM cysteine-rich
SCOP175 1-84 -32.300 60  d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
102-172 -30.000 50  d1j2la_ g.20.1.1 (A:) Flavoridin (triflavin) {Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]}
VFDB 23-257 -5.980 12  VFG0486 (gi:16764735) ttrB - Tetrathionate reductase complex, subunit B [Salmonella enterica (serovar typhimurium) LT2]
13 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 451-750) 300 COG0614 1-269 -67.900 28  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
H.sapiens 3-300 -93.700 41  sp|Q9BZ11|ADA33_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 33 OS=Homo sapiens GN=ADAM33 PE=1 SV=2 (Range: 451-750)
HGM_OVER 1-56 -6.550 18  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
NEW_HUMAN_DOMAINS 7-104 -7.250 18  sp|Q5NDL2|AER61_HUMAN Uncharacterized glycosyltransferase AER61 OS=Homo sapiens GN=AER61 PE=2 SV=1 (Range: 19-152)
PDB0614 1-226 -71.500 33  3g5c_A mol:protein length:510 ADAM 22
PfamA27U 5-250 -11.300 14  PF07243.6; GP_PTPV/282-808; Phlebovirus glycoprotein G1
27-151 -43.800 23  PF08516.7; ADAM2_MACFA/473-589; ADAM cysteine-rich
SCOP175 1-29 -10.600 34  d2echa_ g.20.1.1 (A:) Echistatin {Saw-scaled viper (Echis carinatus) [TaxId: 40353]}
VFDB 5-198 -4.910 10  VFG2239 (gi:49476018) virB10 - virB10 protein homolog [Bartonella henselae Houston-1] (VF0369)
14 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 601-900) 300 COG0614 1-117 -33.500 20  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
1-251 -25.300 14  [W] KOG3658 Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases
1-300 -18.500 [W] KOG3545 Olfactomedin and related extracellular matrix glycoproteins
H.sapiens 1-288 -62.900 28  sp|O43184|ADA12_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 12 OS=Homo sapiens GN=ADAM12 PE=1 SV=3 (Range: 601-881)
HGM_OVER 7-144 -4.710 11  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
NEW_HUMAN_DOMAINS 5-68 -7.740 18  sp|Q8IWV7|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1 (Range: 1270-1749)
PDB0614 1-80 -32.500 30  3g5c_A mol:protein length:510 ADAM 22
PfamA27U 21-299 -12.200 PF05934.6; CLCC1_HUMAN/3-551; Mid-1-related chloride channel (MCLC)
SCOP175 2-59 -7.650 17  d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}
VFDB 114-300 -10.100 10  VFG1283 (gi:21284150) fnb - ORFID:MW2421~fibronectin-binding protein homolog [Staphylococcus aureus MW2] (VF0010)
15 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 751-930) 180 COG0614 6-180 -19.800 [Z] KOG3756 Pinin (desmosome-associated protein)
H.sapiens 2-180 -20.400 10  sp|Q9BSE2|TMM79_HUMAN Transmembrane protein 79 OS=Homo sapiens GN=TMEM79 PE=1 SV=1
6-134 -25.900 10  sp|P41440|S19A1_HUMAN Folate transporter 1 OS=Homo sapiens GN=SLC19A1 PE=1 SV=3
HGM_OVER 136-180 -3.660 PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
NEW_HUMAN_DOMAINS 29-91 -4.250 15  sp|Q96EK2|PF21B_HUMAN PHD finger protein 21B OS=Homo sapiens GN=PHF21B PE=2 SV=1 (Range: 144-233)
PDB0614 12-180 -14.900 4jjn_K mol:protein length:382 Regulatory protein SIR3
PfamA27U 1-180 -27.000 PF11725.3; A8E3E7_PSEVI/1-1719; Pathogenicity factor
SCOP175 1-89 -4.740 d1gw5a_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 2-180 -23.700 VFG1283 (gi:21284150) fnb - ORFID:MW2421~fibronectin-binding protein homolog [Staphylococcus aureus MW2] (VF0010)
16 sp|P11766|ADHX_HUMAN Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4 374 COG0614 6-374 -128.000 62  [C] COG1062 Zn-dependent alcohol dehydrogenases, class III
H.sapiens 2-374 -127.000 63  sp|P07327|ADH1A_HUMAN Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2
HGM_OVER 141-275 -3.570 11  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
NEW_HUMAN_DOMAINS 96-197 -5.350 18  sp|Q8ND82|Z280C_HUMAN Zinc finger protein 280C OS=Homo sapiens GN=ZNF280C PE=1 SV=1 (Range: 611-716)
PDB0614 1-374 -130.000 100  1mc5_A mol:protein length:374 Alcohol dehydrogenase class III chi chain
PfamA27U 4-202 -10.700 15  PF16884; F0SJM3.1/9-160; N-terminal domain of oxidoreductase
32-160 -28.800 23  PF08240.7; Q92UI4_RHIME/24-130; Alcohol dehydrogenase GroES-like domain
181-374 -20.200 17  PF16912; D2RW30.1/144-362; Glucose dehydrogenase C-terminus
202-333 -22.700 21  PF00107.21; ADH_SULSO/182-311; Zinc-binding dehydrogenase
SCOP175 2-198 -89.400 54  d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
164-339 -78.900 65  d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
VFDB 1-251 -4.330 12  VFG1892 (gi:15791451) fliY - putative flagellar motor switch protein [Campylobacter jejuni NCTC 11168] (VF0114)
17 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300) 300 COG0614 2-300 -25.200 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
H.sapiens 2-201 -18.600 10  sp|Q86VR2|F134C_HUMAN Protein FAM134C OS=Homo sapiens GN=FAM134C PE=1 SV=1
23-186 -22.900 14  sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=2 (Range: 751-1050)
179-299 -16.700 sp|Q96N19|G137A_HUMAN(removed signalp:1-43) Integral membrane protein GPR137 OS=Homo sapiens GN=GPR137 PE=2 SV=2
HGM_OVER 1-96 -2.780 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
NEW_HUMAN_DOMAINS 28-106 -6.650 14  sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4 (Range: 606-751)
PDB0614 6-300 -10.600 13  3h0g_A mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
131-300 -11.700 4jjn_K mol:protein length:382 Regulatory protein SIR3
PfamA27U 7-300 -20.500 PF11725.3; A8E3E7_PSEVI/1-1719; Pathogenicity factor
SCOP175 1-89 -4.660 d1gw5a_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 5-150 -16.900 13  VFG1795 (gi:37572662) cba - c protein beta antigen [Streptococcus agalactiae FM027022] (VF0277)
20-300 -15.300 10  VFG2419 (gi:21281935) coa - staphylocoagulase precursor [Staphylococcus aureus MW2] (VF0421)
18 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 151-450) 300 COG0614 1-256 -17.700 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
1-300 -12.500 [K] KOG0323 TFIIF-interacting CTD phosphatases, including NLI-interacting factor
H.sapiens 4-164 -10.600 14  sp|Q8N884|CF150_HUMAN Uncharacterized protein C6orf150 OS=Homo sapiens GN=C6orf150 PE=1 SV=2
48-299 -16.000 14  sp|Q9H0W8|SMG9_HUMAN Protein SMG9 OS=Homo sapiens GN=SMG9 PE=1 SV=1
151-300 -24.600 100  sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600)
HGM_OVER 253-300 -3.710 21  HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;
NEW_HUMAN_DOMAINS 256-299 -5.240 18  sp|A6NJ88|SGE1L_HUMAN Putative SAGE1-like protein OS=Homo sapiens PE=5 SV=4 (Range: 533-616)
PDB0614 243-300 -20.400 44  3ihw_A mol:protein length:184 CENTG3
PfamA27U 1-300 -13.800 10  PF11725.3; A8E3E7_PSEVI/1-1719; Pathogenicity factor
SCOP175 252-300 -18.600 100  d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-299 -9.700 VFG2139 (gi:15605397) CT664 - (FHA domain; homology to adenylate cyclase) [Chlamydia trachomatis D/UW-3/CX] (VF0344)
192-300 -10.700 22  VFG0160 (gi:15597593) pvdE - pyoverdine biosynthesis protein PvdE [Pseudomonas aeruginosa PAO1] (VF0094)
19 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600) 300 COG0614 88-293 -62.400 22  [R] KOG0395 Ras-related GTPase
H.sapiens 76-296 -73.500 51  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 1-300)
HGM_OVER 99-267 -4.680 PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
NEW_HUMAN_DOMAINS 109-241 -5.910 sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0614 87-299 -55.100 13  4cz2_A mol:protein length:230 RAS-RELATED PROTEIN RAB-32
100-277 -71.200 98  2bmj_A mol:protein length:178 CENTAURIN GAMMA 1
PfamA27U 108-268 -53.600 28  PF00071.17; RAB9A_CANFA/9-174; Ras family
SCOP175 89-292 -10.000 d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}
102-275 -70.600 100  d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 109-294 -16.200 13  VFG1674 (gi:28316254) orf51 - hypothetical protein [Escherichia coli 536]
20 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 451-750) 300 COG0614 1-142 -44.400 21  [R] KOG0395 Ras-related GTPase
1-176 -37.300 21  [T] KOG4252 GTP-binding protein
1-297 -25.600 12  [S] KOG4273 Uncharacterized conserved protein
H.sapiens 17-300 -110.000 52  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 151-450)
HGM_OVER 15-125 -4.970 PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
NEW_HUMAN_DOMAINS 5-80 -5.420 18  sp|Q08AI8|CB054_HUMAN Uncharacterized protein C2orf54 OS=Homo sapiens GN=C2orf54 PE=1 SV=2 (Range: 1-111)
PDB0614 1-127 -63.600 100  2bmj_A mol:protein length:178 CENTAURIN GAMMA 1
PfamA27U 1-118 -44.400 25  PF00071.17; RAB9A_CANFA/9-174; Ras family
SCOP175 1-125 -64.100 100  d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 5-123 -6.350 10  VFG1522 (gi:24528051) ORF71 - hypothetical protein [Escherichia coli 536]


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Selected papers from Godzik Lab

Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.