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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 21 COG0614 1-16 -2.170 12  [Z] KOG1425 Microfibrillar-associated protein MFAP1
H.sapiens 1-14 -6.210 21  sp|Q8N9W4|GG6L2_HUMAN Golgin subfamily A member 6-like protein 2 OS=Homo sapiens GN=GOLGA6L2 PE=2 SV=2 (Range: 451-650)
HGM_OVER 1-21 -1.880 14  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
NEW_HUMAN_DOMAINS 2-18 -4.050 29  sp|O43520|AT8B1_HUMAN Probable phospholipid-transporting ATPase IC OS=Homo sapiens GN=ATP8B1 PE=1 SV=3 (Range: 57-118)
PDB0614 3-19 -2.330 23  3j65_p mol:protein length:199 Ribosome biogenesis protein RLP24
PfamA27U 1-20 -3.230 40  PF12537.3; B4IVC6_DROYA/125-195; Protein of unknown function (DUF3735 topsan)
SCOP175 4-17 -1.750 35  d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 1-13 -3.150 30  VFG1320 (gi:21282743) isdD - conserved hypothetical protein [Staphylococcus aureus MW2] (VF0015)
2 gi|16758995|ref|NP_454612.1| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 820 COG0614 1-486 -104.000 27  [E] KOG0456 Aspartate kinase
456-820 -106.000 68  [E] COG0460 Homoserine dehydrogenase
H.sapiens 3-263 -7.620 14  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 (Range: 1-300)
HGM_OVER 578-699 -3.140 11  HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;
NEW_HUMAN_DOMAINS 203-272 -5.800 19  sp|Q3B7T3|BEAN1_HUMAN Protein BEAN1 OS=Homo sapiens GN=BEAN1 PE=2 SV=2 (Range: 97-175)
PDB0614 1-465 -104.000 35  3c1m_A mol:protein length:473 Probable aspartokinase
461-817 -92.300 31  1q7g_A mol:protein length:359 Homoserine dehydrogenase
PfamA27U 614-811 -30.300 28  PF00742.14; A6X079_OCHA4/139-317; Homoserine dehydrogenase
SCOP175 3-300 -76.200 34  d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
316-388 -27.600 23  d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
382-489 -38.800 23  d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
462-635 -57.300 26  d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
614-798 -75.100 34  d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 278-453 -8.000 13  VFG1033 (gi:15808713) orf17 - unknown [Shigella flexneri (serotype 2a) YSH6000]
3 gi|16758996|ref|NP_454613.1| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 309 COG0614 2-309 -116.000 70  [E] COG0083 Homoserine kinase
H.sapiens 4-308 -16.400 19  sp|Q01415|GALK2_HUMAN N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1
56-286 -21.300 15  sp|Q8N0W3|FUK_HUMAN L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2 (Range: 751-1050)
HGM_OVER 121-281 -2.850 PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
NEW_HUMAN_DOMAINS 55-150 -5.510 16  sp|Q17RM4|CC142_HUMAN Coiled-coil domain-containing protein 142 OS=Homo sapiens GN=CCDC142 PE=2 SV=1 (Range: 139-271)
PDB0614 1-308 -115.000 33  4p52_A mol:protein length:331 Homoserine kinase
PfamA27U 83-150 -12.100 25  PF00288.21; ISPE_BACSU/86-144; GHMP kinases N terminal domain
SCOP175 2-167 -68.700 31  d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
170-308 -53.600 28  d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
VFDB 1-308 -26.200 16  VFG1953 (gi:15792743) Cj1425c - putative sugar kinase [Campylobacter jejuni NCTC 11168] (VF0323)
4 gi|16758997|ref|NP_454614.1| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 428 COG0614 1-427 -105.000 29  [E] COG0498 Threonine synthase
H.sapiens 1-427 -106.000 28  sp|Q86YJ6|THNS2_HUMAN Threonine synthase-like 2 OS=Homo sapiens GN=THNSL2 PE=2 SV=3
HGM_OVER 125-322 -4.050 12  PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF
NEW_HUMAN_DOMAINS 17-114 -5.880 15  sp|Q9P217|ZSWM5_HUMAN Zinc finger SWIM domain-containing protein 5 OS=Homo sapiens GN=ZSWIM5 PE=2 SV=2 (Range: 655-767)
PDB0614 1-428 -131.000 93  1vb3_A mol:protein length:428 Threonine synthase
PfamA27U 2-80 -34.800 25  PF14821.1; A0Z7L9_9GAMM/4-82; Threonine synthase N terminus
SCOP175 1-428 -131.000 93  d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}
VFDB 9-369 -7.100 15  VFG1582 (gi:23954265) orf48 - hypothetical protein [Escherichia coli 536]
5 gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 257 COG0614 1-257 -123.000 86  [S] COG3022 Uncharacterized protein conserved in bacteria
H.sapiens 26-237 -9.670 sp|O15033|K0317_HUMAN(removed signalp:1-31) Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3 (Range: 301-600)
HGM_OVER 10-203 -4.780 14  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
NEW_HUMAN_DOMAINS 115-236 -6.530 21  sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2 (Range: 877-1043)
PDB0614 112-221 -8.310 18  1xi0_A mol:protein length:145 lectin
PfamA27U 1-245 -120.000 60  PF03883.9; Y1338_ALCBS/1-245; Protein of unknown function (DUF328 topsan)
SCOP175 112-221 -8.070 17  d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId: 5386]}
VFDB 110-218 -5.760 13  VFG2423 (gi:151222088) scn - complement inhibitor SCIN [Staphylococcus aureus Newman] (VF0425)
6 gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 476 COG0614 1-471 -146.000 43  [E] COG1115 Na+/alanine symporter
H.sapiens 55-442 -9.970 10  sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1
HGM_OVER 16-344 -4.210 PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]
NEW_HUMAN_DOMAINS 77-125 -6.420 16  sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5 (Range: 1-60)
PDB0614 52-432 -14.600 15  3gi8_C mol:protein length:444 Uncharacterized protein MJ0609
PfamA27U 40-458 -138.000 47  PF01235.12; Y183_HAEIN/53-467; Sodium:alanine symporter family
SCOP175 59-427 -9.740 13  d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
VFDB 49-437 -8.300 13  VFG1671 (gi:28316251) orf48 - putative lysin/cadaverin transporter [Escherichia coli 536]
7 gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 317 COG0614 1-317 -146.000 87  [G] COG0176 Transaldolase
H.sapiens 1-317 -138.000 59  sp|P37837|TALDO_HUMAN Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2
HGM_OVER 1-149 -3.350 10  HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;
NEW_HUMAN_DOMAINS 137-235 -6.970 sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo sapiens GN=ADNP PE=1 SV=1 (Range: 446-529)
PDB0614 1-317 -144.000 94  3cwn_A mol:protein length:337 Transaldolase B
PfamA27U 14-313 -139.000 58  PF00923.14; Q966C7_CAEEL/13-315; Transaldolase
SCOP175 2-317 -146.000 94  d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}
VFDB 1-156 -4.260 13  VFG0407 (gi:16082745) yopR/yscH - putative type III secretion protein [Yersinia pestis CO92] (VF0140)
8 gi|16759001|ref|NP_454618.1| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 196 COG0614 2-191 -99.800 75  [H] COG0521 Molybdopterin biosynthesis enzymes
H.sapiens 2-196 -75.400 32  sp|Q9NQX3|GEPH_HUMAN Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1 (Range: 1-300)
HGM_OVER 54-185 -3.260 13  HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;
NEW_HUMAN_DOMAINS 79-164 -5.180 15  sp|P86478|PR20E_HUMAN Proline-rich protein 20E OS=Homo sapiens GN=PRR20E PE=4 SV=1 (Range: 134-221)
PDB0614 1-195 -102.000 91  1di6_A mol:protein length:195 MOLYBDENUM COFACTOR BIOSYNTHETIC ENZYME
PfamA27U 8-144 -17.100 21  PF00994.19; CINAL_DESPS/4-169; Probable molybdopterin binding domain
SCOP175 2-191 -100.000 93  d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
VFDB 51-149 -6.240 10  VFG0839 (gi:15801498) paa - Paa [Escherichia coli O157:H7 EDL933] (VF0194)
9 gi|16759002|ref|NP_454619.1| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 188 COG0614 3-184 -96.400 65  [S] COG1584 Predicted membrane protein
H.sapiens 47-118 -10.100 18  sp|Q96HP8|T176A_HUMAN Transmembrane protein 176A OS=Homo sapiens GN=TMEM176A PE=2 SV=1
47-183 -9.760 10  sp|Q8N5U1|M4A15_HUMAN Membrane-spanning 4-domains subfamily A member 15 OS=Homo sapiens GN=MS4A15 PE=2 SV=2
HGM_OVER 71-166 -4.970 11  PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
NEW_HUMAN_DOMAINS 47-75 -6.400 17  sp|Q7Z404|TMC4_HUMAN Transmembrane channel-like protein 4 OS=Homo sapiens GN=TMC4 PE=2 SV=3 (Range: 193-247)
PDB0614 4-163 -7.360 12  1dg3_A mol:protein length:592 PROTEIN (INTERFERON-INDUCED GUANYLATE-BINDING
PfamA27U 3-186 -91.700 32  PF01184.14; A7TND9_VANPO/71-281; GPR1/FUN34/yaaH family
SCOP175 2-84 -7.190 22  d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
VFDB 2-180 -6.470 14  VFG2151 (gi:15605597) CT861 - hypothetical protein [Chlamydia trachomatis D/UW-3/CX] (VF0344)
10 gi|16759003|ref|NP_454620.1| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 237 COG0614 1-237 -94.300 87  [S] COG4735 Uncharacterized protein conserved in bacteria
H.sapiens 11-129 -7.730 12  sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2 (Range: 1051-1350)
HGM_OVER 18-124 -5.100 11  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
NEW_HUMAN_DOMAINS 6-121 -6.240 13  sp|Q9BVR0|HRC23_HUMAN Putative HERC2-like protein 3 OS=Homo sapiens GN=HERC2P3 PE=5 SV=2 (Range: 118-270)
PDB0614 8-144 -7.660 11  2clb_A mol:protein length:188 DPS-LIKE PROTEIN
PfamA27U 5-39 -11.800 40  PF13099.1; D0W7K2_NEILA/3-37; Domain of unknown function (DUF3944 topsan)
SCOP175 9-134 -6.780 d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium smegmatis [TaxId: 1772]}
VFDB 1-135 -6.740 10  VFG1140 (gi:15641810) VC1808 - hypothetical protein [Vibrio cholerae N16961]
11 gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 111 COG0614 1-97 -7.020 [R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion
H.sapiens 14-109 -7.510 14  sp|O43149|ZZEF1_HUMAN Zinc finger ZZ-type and EF-hand domain-containing protein 1 OS=Homo sapiens GN=ZZEF1 PE=1 SV=6 (Range: 151-450)
HGM_OVER 38-108 -5.460 16  HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;
NEW_HUMAN_DOMAINS 51-107 -6.990 17  sp|Q8WZA1|PMGT1_HUMAN Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens GN=POMGNT1 PE=1 SV=2 (Range: 233-295)
PDB0614 27-111 -6.900 25  1wwy_A mol:protein length:171 Thioredoxin-like protein 1
PfamA27U 1-111 -55.200 79  PF10807.3; A6T4F3_KLEP7/1-134; Protein of unknown function (DUF2541 topsan)
SCOP175 23-107 -7.380 d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}
VFDB 31-99 -7.110 11  VFG1096 (gi:15641766) motB - chemotaxis protein MotB-related protein [Vibrio cholerae N16961]
12 gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 638 COG0614 1-638 -183.000 56  [O] COG0443 Molecular chaperone
H.sapiens 4-505 -128.000 31  sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1
255-553 -114.000 63  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 301-600)
297-586 -86.800 52  sp|P11021|GRP78_HUMAN(removed signalp:1-18) 78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2 (Range: 301-600)
405-630 -83.300 48  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 451-679)
HGM_OVER 115-495 -3.800 12  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
NEW_HUMAN_DOMAINS 382-502 -11.400 19  sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2 (Range: 520-675)
PDB0614 1-605 -193.000 97  2kho_A mol:protein length:605 Heat shock protein 70
1-638 -127.000 24  3d2e_A mol:protein length:675 Heat shock protein homolog SSE1
PfamA27U 4-604 -186.000 58  PF00012.15; HSP77_YEASX/32-633; Hsp70 protein
SCOP175 2-184 -74.200 53  d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
185-383 -58.100 45  d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
389-506 -75.200 96  d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
507-602 -40.600 96  d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
VFDB 2-405 -9.390 15  VFG1222 (gi:15600237) pilM - type 4 fimbrial biogenesis protein PilM [Pseudomonas aeruginosa PAO1] (VF0082)
13 gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 379 COG0614 1-375 -137.000 58  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
H.sapiens 1-376 -128.000 33  sp|Q96EY1|DNJA3_HUMAN(removed signalp:1-21) DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2
HGM_OVER 294-379 -5.480 16  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
NEW_HUMAN_DOMAINS 6-202 -6.910 14  sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2 (Range: 1539-1749)
PDB0614 1-363 -84.300 39  3lz8_A mol:protein length:329 Putative chaperone DnaJ
PfamA27U 5-67 -40.500 55  PF00226.26; Q22028_CAEEL/17-79; DnaJ domain
10-103 -17.500 11  PF14687.1; A7RRF5_NEMVE/89-191; Domain of unknown function (DUF4460 topsan)
147-207 -31.100 44  PF00684.14; DNAJ1_CORGL/147-211; DnaJ central domain
265-342 -22.900 23  PF01556.13; A2FIH5_TRIVA/258-337; DnaJ C terminal domain
SCOP175 2-76 -49.100 96  d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
2-114 -35.600 18  d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
118-257 -17.600 18  d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
134-212 -44.800 96  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
259-345 -26.300 26  d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 4-340 -4.560 15  VFG1218 (gi:15600233) pilQ - type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa PAO1] (VF0082)
14 gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 315 COG0614 7-313 -30.600 14  [K] COG0583 Transcriptional regulator
H.sapiens 19-92 -7.140 20  sp|Q53TQ3|IN80D_HUMAN INO80 complex subunit D OS=Homo sapiens GN=INO80D PE=1 SV=2 (Range: 601-878)
HGM_OVER 16-109 -5.470 16  PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;
NEW_HUMAN_DOMAINS 7-85 -5.630 14  sp|Q8TC57|CB065_HUMAN Uncharacterized protein C2orf65 OS=Homo sapiens GN=C2orf65 PE=2 SV=1 (Range: 305-454)
PDB0614 3-313 -93.700 19  1utb_A mol:protein length:315 LYSR-TYPE REGULATORY PROTEIN
PfamA27U 16-70 -11.900 20  PF00126.22; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
95-312 -9.620 10  PF03466.15; Q98I60_RHILO/88-294; LysR substrate binding domain
SCOP175 6-96 -44.500 26  d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
90-315 -56.100 16  d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]}
VFDB 7-315 -42.400 11  VFG0441 (gi:17233493) spvR - Salmonella plasmid virulence: regulation of spv operon, lysR family [Salmonella enterica (serovar typhimurium) LT2] (VF0107)
15 gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 114 COG0614 18-94 -10.100 13  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
H.sapiens 5-114 -8.410 sp|Q6PRD1|GP179_HUMAN(removed signalp:1-25) Probable G-protein coupled receptor 179 OS=Homo sapiens GN=GPR179 PE=2 SV=2 (Range: 451-750)
HGM_OVER 4-93 -3.380 10  PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF
NEW_HUMAN_DOMAINS 3-10 -5.350 37  sp|Q2WGJ9|FR1L6_HUMAN Fer-1-like protein 6 OS=Homo sapiens GN=FER1L6 PE=2 SV=2 (Range: 1494-1553)
PDB0614 21-98 -6.250 10  2los_A mol:protein length:121 Transmembrane protein 14C
PfamA27U 19-101 -43.900 18  PF16083; C3X194.1/17-97; LydA holin phage, holin superfamily III
SCOP175 81-102 -5.180 18  d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
VFDB 1-45 -6.320 12  VFG0972 (gi:15675798) sic - inhibitor of complement-mediated lysis [Streptococcus pyogenes SF370] (VF0255)
16 gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 177 COG0614 1-175 -74.600 25  [R] COG3926 Putative secretion activating protein
H.sapiens 6-160 -7.040 11  sp|O15457|MSH4_HUMAN MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=2 SV=2 (Range: 751-936)
HGM_OVER 77-173 -5.420 17  HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;
NEW_HUMAN_DOMAINS 43-176 -6.550 10  sp|P42695|CNDD3_HUMAN Condensin-2 complex subunit D3 OS=Homo sapiens GN=NCAPD3 PE=1 SV=2 (Range: 1-147)
PDB0614 1-175 -83.000 35  2ikb_A mol:protein length:167 Hypothetical protein NMB1012
PfamA27U 3-88 -50.100 30  PF05838.7; Q7ME33_VIBVY/17-107; Glycosyl hydrolase 108
91-176 -33.900 23  PF09374.5; Q8EDS2_SHEON/119-186; Predicted Peptidoglycan domain
SCOP175 1-175 -82.400 35  d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria meningitidis [TaxId: 487]}
VFDB 3-116 -7.050 14  VFG0823 (gi:15804240) Z5131 - - [Escherichia coli O157:H7 EDL933]
17 gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 147 COG0614 2-128 -42.800 15  [K] COG3710 DNA-binding winged-HTH domains
H.sapiens 5-90 -8.110 16  sp|Q9NVM4|ANM7_HUMAN Protein arginine N-methyltransferase 7 OS=Homo sapiens GN=PRMT7 PE=1 SV=1 (Range: 301-600)
HGM_OVER 29-130 -5.400 PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]
NEW_HUMAN_DOMAINS 1-98 -6.840 11  sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2 (Range: 151-468)
PDB0614 2-106 -25.900 15  1gxp_A mol:protein length:106 PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY
17-143 -15.500 10  2fez_A mol:protein length:388 Probable regulatory protein embR
PfamA27U 25-102 -27.400 14  PF00486.23; O85058_PROST/114-189; Transcriptional regulatory protein, C terminal
SCOP175 1-106 -25.900 15  d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
VFDB 3-131 -48.100 20  VFG1600 (gi:23954283) orf66 - hypothetical protein [Escherichia coli 536]
18 gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 699 COG0614 1-512 -128.000 97  [G] COG3325 Chitinase
169-695 -26.300 10  [R] COG3858 Predicted glycosyl hydrolase
H.sapiens 1-473 -30.400 15  sp|Q9BWS9|CHID1_HUMAN(removed signalp:1-19) Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1
53-551 -81.600 20  sp|Q9BZP6|CHIA_HUMAN(removed signalp:1-21) Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1
429-666 -16.600 sp|Q12889|OVGP1_HUMAN(removed signalp:1-21) Oviduct-specific glycoprotein OS=Homo sapiens GN=OVGP1 PE=2 SV=1 (Range: 301-600)
HGM_OVER 174-304 -3.470 16  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
NEW_HUMAN_DOMAINS 192-273 -6.100 11  sp|Q6UXT9|ABH15_HUMAN Abhydrolase domain-containing protein 15 OS=Homo sapiens GN=ABHD15 PE=2 SV=2 (Range: 96-180)
PDB0614 2-509 -108.000 41  4dws_A mol:protein length:546 Chi2
2-617 -97.700 14  4TXG Entity 1(prereleased)
45-698 -87.400 22  3wd0_A mol:protein length:503 Chitinase B
PfamA27U 53-465 -88.700 27  PF00704.23; Q9WFU7_9ABAC/159-544; Glycosyl hydrolases family 18
630-698 -14.100 18  PF14600.1; D2BWX3_DICD5/365-426; Cellulose-binding domain
SCOP175 42-402 -78.000 23  d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]}
49-483 -75.700 22  d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]}
640-696 -14.600 17  d1goia1 b.72.2.1 (A:447-498) Chitinase B, C-terminal domain {Serratia marcescens [TaxId: 615]}
VFDB 172-697 -8.170 11  VFG2030 (gi:13507881) orf6 - involved in cytadherence [Mycoplasma pneumoniae M129] (VF0330)
19 gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 383 COG0614 3-382 -6.740 11  [M] COG1361 S-layer domain
H.sapiens 4-313 -8.610 10  sp|Q4G0P3|HYDIN_HUMAN Hydrocephalus-inducing protein homolog OS=Homo sapiens GN=HYDIN PE=1 SV=2 (Range: 751-1050)
HGM_OVER 39-153 -4.740 12  PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
NEW_HUMAN_DOMAINS 42-133 -5.520 18  tr|F8WDG3|F8WDG3_HUMAN Uncharacterized protein OS=Homo sapiens GN=C6orf25 PE=4 SV=1 (Range: 18-125)
PDB0614 28-267 -7.560 2qnk_A mol:protein length:286 3-hydroxyanthranilate 3,4-dioxygenase
PfamA27U 6-143 -6.950 17  PF00413.19; MMP27_TUPBE/105-261; Matrixin
SCOP175 24-146 -6.890 15  d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 11-142 -8.660 16  VFG1456 (gi:24527988) ORF5 - hypothetical protein [Escherichia coli 536]
20 gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 620 COG0614 138-607 -8.660 10  [G] COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A)
H.sapiens 5-178 -7.150 sp|Q5JPE7|NOMO2_HUMAN(removed signalp:1-31) Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1 (Range: 901-1200)
HGM_OVER 268-514 -3.640 PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
NEW_HUMAN_DOMAINS 397-499 -5.710 11  sp|Q9BU19|ZN692_HUMAN Zinc finger protein 692 OS=Homo sapiens GN=ZNF692 PE=1 SV=1 (Range: 29-120)
PDB0614 194-522 -9.840 14  3vog_A mol:protein length:373 Cellobiohydrolase
PfamA27U 254-517 -8.580 15  PF01341.12; Q0TVM0_PHANO/58-351; Glycosyl hydrolases family 6
SCOP175 196-527 -9.110 14  d1uoza_ c.6.1.1 (A:) Putative cellulase Rv0062 (Cel6, CelA1) {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 318-467 -5.510 10  VFG1070 (gi:15808750) orf54 - unknown [Shigella flexneri (serotype 2a) YSH6000]


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.