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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 7012next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|A0AUZ9|CB067_HUMAN Uncharacterized protein C2orf67 OS=Homo sapiens GN=C2orf67 PE=1 SV=2 (Range: 142-330) 189 COG0113 77-189 -7.690 [S] COG4399 Uncharacterized protein conserved in bacteria
PDB0113 87-128 -5.950 11  2gx5_A mol:protein length:170 GTP-sensing transcriptional pleiotropic repre
PfamA26U 81-115 -7.270 17  PF11851.3; Q5XHC0_XENLA/281-429; Domain of unknown function (DUF3371 topsan)
SCOP175 93-186 -5.640 10  d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}
2 sp|A0AUZ9|CB067_HUMAN Uncharacterized protein C2orf67 OS=Homo sapiens GN=C2orf67 PE=1 SV=2 (Range: 362-412) 51 COG0113 11-49 -5.280 17  [S] COG3644 Uncharacterized protein conserved in bacteria
PDB0113 11-42 -5.920 21  2ovc_A mol:protein length:33 Potassium voltage-gated channel subfamily KQT
PfamA26U 9-49 -6.110 20  PF08733.5; A6ZSI4_YEAS7/16-364; PalH/RIM21
SCOP175 17-40 -5.700 29  d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
3 sp|A0AVF1|TTC26_HUMAN Tetratricopeptide repeat protein 26 OS=Homo sapiens GN=TTC26 PE=2 SV=1 (Range: 486-554) 69 COG0113 21-59 -6.830 20  [T] KOG3941 Intermediate in Toll signal transduction pathway (ECSIT)
PDB0113 1-23 -7.590 39  2d8h_A mol:protein length:80 SH3YL1 protein
PfamA26U 13-64 -6.180 15  PF10820.3; A7MRM7_ENTS8/1-81; Protein of unknown function (DUF2543 topsan)
SCOP175 32-65 -6.710 11  d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839 {Enterococcus faecalis [TaxId: 1351]}
4 tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 1-215) 215 COG0113 96-173 -7.340 14  [I] KOG0817 Acyl-CoA-binding protein
PDB0113 96-174 -8.380 13  2l6b_A mol:protein length:115 NR1C
PfamA26U 15-188 -6.370 10  PF03435.13; A1SAY3_SHEAM/14-443; Saccharopine dehydrogenase
SCOP175 93-173 -8.030 11  d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
5 tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 240-290) 51 COG0113 22-51 -5.010 16  [U] COG0690 Preprotein translocase subunit SecE
PDB0113 15-50 -4.980 16  1ks6_A mol:protein length:107 TRANSFORMING GROWTH FACTOR BETA TYPE II RECEP
PfamA26U 20-49 -5.920 10  PF14414.1; A5Z4R0_9FIRM/19-65; A nuclease of the HNH/ENDO VII superfamily with conserved WHH
SCOP175 9-51 -4.410 15  d2b5ic2 b.1.2.1 (C:34-129) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}
6 tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 311-360) 50 COG0113 1-48 -3.040 25  [M] COG0481 Membrane GTPase LepA
PDB0113 10-45 -6.180 22  3j0g_M mol:protein length:59 E3 protein
PfamA26U 10-45 -5.700 16  PF01563.11; POLS_SAGV/274-332; Alphavirus E3 glycoprotein
SCOP175 10-40 -4.530 16  d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
7 sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2 (Range: 431-614) 184 COG0113 71-184 -5.440 [R] COG3313 Predicted Fe-S protein
PDB0113 18-177 -6.600 13  2iu8_A mol:protein length:374 UDP-3-O-[3-HYDROXYMYRISTOYL] GLUCOSAMINE N-AC
PfamA26U 93-165 -7.000 11  PF02381.13; MRAZ_HAEIN/1-76; MraZ protein
SCOP175 67-177 -6.820 d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId: 9606]}
8 sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2 (Range: 1641-1750) 110 COG0113 5-110 -9.770 18  [S] COG4681 Uncharacterized protein conserved in bacteria
PDB0113 2-110 -10.000 17  3c0u_A mol:protein length:183 Uncharacterized protein yaeQ
PfamA26U 5-86 -9.560 12  PF07152.7; Q2BN25_9GAMM/15-189; YaeQ protein
SCOP175 5-110 -9.950 14  d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487 {Pseudomonas syringae pv. tomato [TaxId: 323]}
9 sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2 (Range: 2018-2093) 76 COG0113 5-39 -7.520 22  [R] COG3302 DMSO reductase anchor subunit
PDB0113 1-56 -6.230 10  1x5a_A mol:protein length:107 Ephrin type-A receptor 1
PfamA26U 1-56 -7.620 16  PF00041.16; KALM_CHICK/544-641; Fibronectin type III domain
SCOP175 1-56 -6.740 12  d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
10 sp|A0AVK6|E2F8_HUMAN Transcription factor E2F8 OS=Homo sapiens GN=E2F8 PE=1 SV=1 (Range: 470-543) 74 COG0113 5-44 -5.410 22  [C] COG0221 Inorganic pyrophosphatase
PDB0113 5-52 -6.740 22  3ld3_A mol:protein length:199 Inorganic pyrophosphatase
PfamA26U 5-52 -6.170 18  PF00719.14; Q7VVV3_BORPE/17-176; Inorganic pyrophosphatase
SCOP175 5-52 -6.150 20  d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli [TaxId: 562]}
11 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 117-259) 143 COG0113 1-143 -29.700 15  [U] COG5043 Vacuolar protein sorting-associated protein
PDB0113 2-52 -5.860 2x9a_A mol:protein length:65 ATTACHMENT PROTEIN G3P
PfamA26U 2-49 -7.310 10  PF06848.6; Q8PSX7_METMA/493-673; Disaggregatase related repeat
SCOP175 1-46 -6.950 10  d2evra1 b.34.11.3 (A:13-86) Cell wall-associated hydrolase Spr N-terminal domain {Nostoc punctiforme [TaxId: 272131]}
12 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 309-401) 93 COG0113 8-87 -6.300 13  [S] KOG4740 Uncharacterized conserved protein
PDB0113 6-93 -6.770 14  1j7g_A mol:protein length:144 D-tyrosyl-tRNA(Tyr) deacylase
PfamA26U 19-79 -6.230 14  PF03228.9; Q695S6_9ADEN/1-116; Adenoviral core protein VII
SCOP175 6-93 -6.380 19  d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia coli [TaxId: 562]}
13 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 488-662) 175 COG0113 1-159 -6.050 10  [J] COG0097 Ribosomal protein L6P/L9E
PDB0113 1-159 -7.240 15  1c04_B mol:protein length:177 RIBOSOMAL PROTEIN L6
PfamA26U 19-140 -7.660 13  PF06371.8; DIA_DROME/59-241; Diaphanous GTPase-binding Domain
SCOP175 2-118 -6.010 11  d1f15a_ b.121.4.5 (A:) Cucumovirus coat protein {CMV (Cucumber mosaic virus), strain fny [TaxId: 12305]}
14 sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 (Range: 1275-1361) 87 COG0113 1-87 -6.610 12  [S] COG3502 Uncharacterized protein conserved in bacteria
PDB0113 33-85 -7.090 24  4eak_B mol:protein length:72 5`-AMP-activated protein kinase subunit beta-
PfamA26U 10-85 -8.700 10  PF09191.5; CD4_DELLE/205-313; CD4, extracellular
SCOP175 10-85 -9.840 13  d1cida1 b.1.1.1 (A:1-105) CD4 V-set domains {Rat (Rattus rattus) [TaxId: 10117]}
15 sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 (Range: 195-290) 96 COG0113 1-64 -5.270 18  [R] COG4174 ABC-type uncharacterized transport system, permease component
PDB0113 1-76 -15.200 2k0n_A mol:protein length:85 Mediator of RNA polymerase II transcription s
PfamA26U 3-70 -14.400 10  PF02172.11; EP300_HUMAN/566-646; KIX domain
SCOP175 3-74 -14.300 d1sb0a_ a.12.1.1 (A:) Kix domain of CBP (creb binding protein) {Mouse (Mus musculus) [TaxId: 10090]}
16 sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 (Range: 322-408) 87 COG0113 1-82 -21.900 23  [R] KOG1667 Zn2+-binding protein Melusin/RAR1, contains CHORD domain
PDB0113 1-59 -19.000 15  2xcm_E mol:protein length:74 RAR1
PfamA26U 1-59 -17.100 20  PF04968.7; A1L2S2_XENLA/152-216; CHORD
SCOP175 9-59 -11.500 25  d1btka_ b.55.1.1 (A:) Bruton`s tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
17 sp|A0PJW6|TM223_HUMAN Transmembrane protein 223 OS=Homo sapiens GN=TMEM223 PE=1 SV=1 (Range: 119-202) 84 COG0113 1-84 -7.680 [S] KOG4478 Uncharacterized membrane protein
PDB0113 4-80 -6.850 13  2c3v_A mol:protein length:102 ALPHA-AMYLASE G-6
PfamA26U 1-82 -9.690 14  PF06979.7; Q16J85_AEDAE/77-208; Protein of unknown function (DUF1301 topsan)
SCOP175 2-66 -7.350 18  d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]}
18 sp|A0PJX8|TMM82_HUMAN Transmembrane protein 82 OS=Homo sapiens GN=TMEM82 PE=2 SV=2 (Range: 97-285) 189 COG0113 85-170 -7.390 11  [J] KOG1768 40s ribosomal protein S26
PDB0113 7-108 -7.560 1zu1_A mol:protein length:127 RNA binding protein ZFa
PfamA26U 85-161 -7.420 16  PF01283.14; A7RG86_NEMVE/1-113; Ribosomal protein S26e
SCOP175 33-189 -5.970 11  d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}
19 sp|A0PJY2|FEZF1_HUMAN Fez family zinc finger protein 1 OS=Homo sapiens GN=FEZF1 PE=2 SV=1 (Range: 106-243) 138 COG0113 1-137 -7.810 13  [F] COG3363 Archaeal IMP cyclohydrolase
PDB0113 1-137 -7.650 13  2ntk_A mol:protein length:222 IMP cyclohydrolase
PfamA26U 1-137 -7.810 13  PF07826.6; PURO_METTH/1-202; IMP cyclohydrolase-like protein
SCOP175 1-137 -7.810 13  d2ntka1 d.153.2.1 (A:1-202) Hypothetical protein MTH1020 {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
20 sp|A0ZSE6|CC50C_HUMAN Cell cycle control protein 50C OS=Homo sapiens GN=TMEM30C PE=2 SV=2 (Range: 58-113) 56 COG0113 1-44 -5.180 22  [DKT] KOG2952 Cell cycle control protein
PDB0113 1-51 -5.850 1d1n_A mol:protein length:99 INITIATION FACTOR 2
PfamA26U 1-44 -6.530 15  PF03381.10; Q759V2_ASHGO/68-365; LEM3 (ligand-effect modulator 3) family / CDC50 family
SCOP175 1-51 -5.850 d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]}


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;