FFAS03 list of results B.fragilis / PfamA26U

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range:1-117) 117 PfamA26U 33-112 -30.300 18 PF05402.7; A3KTI3_PSEAE/11-90; Coenzyme PQQ synthesis protein D (PqqD)
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range:1-74) 74 PfamA26U 20-74 -6.500 20 PF10961.3; Q179T4_AEDAE/2-92; Protein of unknown function (DUF2763 topsan)
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range:1-447) 447 PfamA26U 4-336 -36.100 9 PF07260.6; Q6NS07_XENLA/1-345; Progressive ankylosis protein (ANKH)
40-434 -21.400 11 PF03023.9; MVIN_ECOLI/28-479; MviN-like protein
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range:1-99) 99 PfamA26U 44-97 -42.700 35 PF00253.16; Q6FQ77_CANGA/59-113; Ribosomal protein S14p/S29e
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range:1-130) 130 PfamA26U 6-130 -24.100 21 PF00293.23; NUDC_ECOLI/127-247; NUDIX domain
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range:1-110) 110 PfamA26U 6-101 -62.700 71 PF13571.1; B6W538_9BACE/6-101; Domain of unknown function (DUF4133 topsan)
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range:1-415) 415 PfamA26U 8-47 -20.400 40 PF06689.8; CLPX_RHOFD/12-51; ClpX C4-type zinc finger
52-381 -11.300 23 PF05496.7; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus
79-243 -12.800 22 PF01078.16; Q8EJV7_SHEON/193-396; Magnesium chelatase, subunit ChlI
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range:24-588) 565 PfamA26U 4-549 -24.000 11 PF12569.3; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
5-310 -27.200 10 PF13429.1; Q39U81_GEOMG/198-480; Tetratricopeptide repeat
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range:1-157) 157 PfamA26U 10-132 -39.100 15 PF14137.1; A6LYB2_CLOB8/32-182; Domain of unknown function (DUF4304 topsan)
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range:1-207) 207 PfamA26U 30-140 -7.220 16 PF06232.6; Q2HVW6_MEDTR/41-164; Embryo-specific protein 3, (ATS3)
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range:1-311) 311 PfamA26U 100-196 -34.500 21 PF04773.8; Q2YA72_NITMU/40-132; FecR protein
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range:1-142) 142 PfamA26U 10-133 -73.800 31 PF02657.10; YGDK_ECOLI/20-145; Fe-S metabolism associated domain
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range:1-225) 225 PfamA26U 1-216 -12.300 11 PF07688.7; KAIA_SYNY3/5-288; KaiA domain
3-113 -52.200 27 PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain
145-222 -35.400 23 PF00486.23; O85058_PROST/114-189; Transcriptional regulatory protein, C terminal
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range:1-388) 388 PfamA26U 160-383 -53.600 21 PF04095.11; O23191_ARATH/174-402; Nicotinate phosphoribosyltransferase (NAPRTase) family
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range:1-245) 245 PfamA26U 3-245 -39.100 10 PF06788.8; Q57PD7_SALCH/4-239; Uncharacterised protein family (UPF0257 topsan)
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range:1-599) 599 PfamA26U 43-126 -51.500 45 PF11760.3; Q6ARS3_DESPS/35-118; Cobalamin synthesis G N-terminal
130-228 -26.600 13 PF11761.3; A8FV20_SHESH/134-234; Cobalamin biosynthesis central region
226-344 -39.000 29 PF01890.11; A1AU03_PELPD/230-350; Cobalamin synthesis G C-terminus
353-559 -31.800 16 PF00590.15; A1AUS5_PELPD/5-191; Tetrapyrrole (Corrin/Porphyrin) Methylases
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range:1-299) 299 PfamA26U 243-277 -22.200 22 PF08238.7; Q5PFP4_SALPA/166-201; Sel1 repeat
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range:1-361) 361 PfamA26U 292-352 -8.390 11 PF05495.7; A7TR54_VANPO/18-100; CHY zinc finger
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range:1-71) 71 PfamA26U 5-67 -6.050 11 PF07370.6; A4EER5_9RHOB/7-143; Protein of unknown function (DUF1489 topsan)
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range:1-221) 221 PfamA26U 56-220 -12.700 12 PF12541.3; C4ZDA1_EUBR3/4-281; Protein of unknown function (DUF3737 topsan)
75-172 -28.800 28 PF13599.1; A5FH08_FLAJ1/44-123; Pentapeptide repeats (9 copies)

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|60680547\|ref\|YP_210691.1\| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range:1-117)`	`117`	`PfamA26U`	`33-112`	`-30.300`	`18`	`PF05402.7; A3KTI3_PSEAE/11-90; Coenzyme PQQ synthesis protein D (PqqD)`
2	`gi\|60680256\|ref\|YP_210400.1\| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range:1-74)`	`74`	`PfamA26U`	`20-74`	`-6.500`	`20`	`PF10961.3; Q179T4_AEDAE/2-92; Protein of unknown function (DUF2763 topsan)`
3	`gi\|60681449\|ref\|YP_211593.1\| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range:1-447)`	`447`	`PfamA26U`	`4-336`	`-36.100`	`9`	`PF07260.6; Q6NS07_XENLA/1-345; Progressive ankylosis protein (ANKH)`
				`40-434`	`-21.400`	`11`	`PF03023.9; MVIN_ECOLI/28-479; MviN-like protein`
4	`gi\|60683425\|ref\|YP_213569.1\| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range:1-99)`	`99`	`PfamA26U`	`44-97`	`-42.700`	`35`	`PF00253.16; Q6FQ77_CANGA/59-113; Ribosomal protein S14p/S29e`
5	`gi\|60682385\|ref\|YP_212529.1\| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range:1-130)`	`130`	`PfamA26U`	`6-130`	`-24.100`	`21`	`PF00293.23; NUDC_ECOLI/127-247; NUDIX domain`
6	`gi\|60680762\|ref\|YP_210906.1\| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range:1-110)`	`110`	`PfamA26U`	`6-101`	`-62.700`	`71`	`PF13571.1; B6W538_9BACE/6-101; Domain of unknown function (DUF4133 topsan)`
7	`gi\|60683330\|ref\|YP_213474.1\| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range:1-415)`	`415`	`PfamA26U`	`8-47`	`-20.400`	`40`	`PF06689.8; CLPX_RHOFD/12-51; ClpX C4-type zinc finger`
				`52-381`	`-11.300`	`23`	`PF05496.7; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus`
				`79-243`	`-12.800`	`22`	`PF01078.16; Q8EJV7_SHEON/193-396; Magnesium chelatase, subunit ChlI`
8	`gi\|60682477\|ref\|YP_212621.1\|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range:24-588)`	`565`	`PfamA26U`	`4-549`	`-24.000`	`11`	`PF12569.3; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1`
				`5-310`	`-27.200`	`10`	`PF13429.1; Q39U81_GEOMG/198-480; Tetratricopeptide repeat`
9	`gi\|60681243\|ref\|YP_211387.1\| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range:1-157)`	`157`	`PfamA26U`	`10-132`	`-39.100`	`15`	`PF14137.1; A6LYB2_CLOB8/32-182; Domain of unknown function (DUF4304 topsan)`
10	`gi\|60682315\|ref\|YP_212459.1\| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range:1-207)`	`207`	`PfamA26U`	`30-140`	`-7.220`	`16`	`PF06232.6; Q2HVW6_MEDTR/41-164; Embryo-specific protein 3, (ATS3)`
11	`gi\|60680924\|ref\|YP_211068.1\| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range:1-311)`	`311`	`PfamA26U`	`100-196`	`-34.500`	`21`	`PF04773.8; Q2YA72_NITMU/40-132; FecR protein`
12	`gi\|60683563\|ref\|YP_213707.1\| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range:1-142)`	`142`	`PfamA26U`	`10-133`	`-73.800`	`31`	`PF02657.10; YGDK_ECOLI/20-145; Fe-S metabolism associated domain`
13	`gi\|60682225\|ref\|YP_212369.1\| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range:1-225)`	`225`	`PfamA26U`	`1-216`	`-12.300`	`11`	`PF07688.7; KAIA_SYNY3/5-288; KaiA domain`
				`3-113`	`-52.200`	`27`	`PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain`
				`145-222`	`-35.400`	`23`	`PF00486.23; O85058_PROST/114-189; Transcriptional regulatory protein, C terminal`
14	`gi\|60682801\|ref\|YP_212945.1\| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range:1-388)`	`388`	`PfamA26U`	`160-383`	`-53.600`	`21`	`PF04095.11; O23191_ARATH/174-402; Nicotinate phosphoribosyltransferase (NAPRTase) family`
15	`gi\|60680875\|ref\|YP_211019.1\| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range:1-245)`	`245`	`PfamA26U`	`3-245`	`-39.100`	`10`	`PF06788.8; Q57PD7_SALCH/4-239; Uncharacterised protein family (UPF0257 topsan)`
16	`gi\|60682029\|ref\|YP_212173.1\| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range:1-599)`	`599`	`PfamA26U`	`43-126`	`-51.500`	`45`	`PF11760.3; Q6ARS3_DESPS/35-118; Cobalamin synthesis G N-terminal`
				`130-228`	`-26.600`	`13`	`PF11761.3; A8FV20_SHESH/134-234; Cobalamin biosynthesis central region`
				`226-344`	`-39.000`	`29`	`PF01890.11; A1AU03_PELPD/230-350; Cobalamin synthesis G C-terminus`
				`353-559`	`-31.800`	`16`	`PF00590.15; A1AUS5_PELPD/5-191; Tetrapyrrole (Corrin/Porphyrin) Methylases`
17	`gi\|60681247\|ref\|YP_211391.1\| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range:1-299)`	`299`	`PfamA26U`	`243-277`	`-22.200`	`22`	`PF08238.7; Q5PFP4_SALPA/166-201; Sel1 repeat`
18	`gi\|60681605\|ref\|YP_211749.1\| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range:1-361)`	`361`	`PfamA26U`	`292-352`	`-8.390`	`11`	`PF05495.7; A7TR54_VANPO/18-100; CHY zinc finger`
19	`gi\|60681337\|ref\|YP_211481.1\| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range:1-71)`	`71`	`PfamA26U`	`5-67`	`-6.050`	`11`	`PF07370.6; A4EER5_9RHOB/7-143; Protein of unknown function (DUF1489 topsan)`
20	`gi\|60680681\|ref\|YP_210825.1\| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range:1-221)`	`221`	`PfamA26U`	`56-220`	`-12.700`	`12`	`PF12541.3; C4ZDA1_EUBR3/4-281; Protein of unknown function (DUF3737 topsan)`
				`75-172`	`-28.800`	`28`	`PF13599.1; A5FH08_FLAJ1/44-123; Pentapeptide repeats (9 copies)`