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Results: 1-20 of 4678next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 PfamA26U 33-112 -30.300 18  PF05402.7; A3KTI3_PSEAE/11-90; Coenzyme PQQ synthesis protein D (PqqD)
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 PfamA26U 20-74 -6.500 20  PF10961.3; Q179T4_AEDAE/2-92; Protein of unknown function (DUF2763 topsan)
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 PfamA26U 4-336 -36.100 PF07260.6; Q6NS07_XENLA/1-345; Progressive ankylosis protein (ANKH)
40-434 -21.400 11  PF03023.9; MVIN_ECOLI/28-479; MviN-like protein
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 PfamA26U 44-97 -42.700 35  PF00253.16; Q6FQ77_CANGA/59-113; Ribosomal protein S14p/S29e
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 PfamA26U 6-130 -24.100 21  PF00293.23; NUDC_ECOLI/127-247; NUDIX domain
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 PfamA26U 6-101 -62.700 71  PF13571.1; B6W538_9BACE/6-101; Domain of unknown function (DUF4133 topsan)
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 PfamA26U 8-47 -20.400 40  PF06689.8; CLPX_RHOFD/12-51; ClpX C4-type zinc finger
52-381 -11.300 23  PF05496.7; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus
79-243 -12.800 22  PF01078.16; Q8EJV7_SHEON/193-396; Magnesium chelatase, subunit ChlI
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 PfamA26U 4-549 -24.000 11  PF12569.3; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
5-310 -27.200 10  PF13429.1; Q39U81_GEOMG/198-480; Tetratricopeptide repeat
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 PfamA26U 10-132 -39.100 15  PF14137.1; A6LYB2_CLOB8/32-182; Domain of unknown function (DUF4304 topsan)
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 PfamA26U 30-140 -7.220 16  PF06232.6; Q2HVW6_MEDTR/41-164; Embryo-specific protein 3, (ATS3)
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 PfamA26U 100-196 -34.500 21  PF04773.8; Q2YA72_NITMU/40-132; FecR protein
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 PfamA26U 10-133 -73.800 31  PF02657.10; YGDK_ECOLI/20-145; Fe-S metabolism associated domain
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 PfamA26U 1-216 -12.300 11  PF07688.7; KAIA_SYNY3/5-288; KaiA domain
3-113 -52.200 27  PF00072.19; ZRAR_SALTY/8-118; Response regulator receiver domain
145-222 -35.400 23  PF00486.23; O85058_PROST/114-189; Transcriptional regulatory protein, C terminal
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 PfamA26U 160-383 -53.600 21  PF04095.11; O23191_ARATH/174-402; Nicotinate phosphoribosyltransferase (NAPRTase) family
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 PfamA26U 3-245 -39.100 10  PF06788.8; Q57PD7_SALCH/4-239; Uncharacterised protein family (UPF0257 topsan)
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 PfamA26U 43-126 -51.500 45  PF11760.3; Q6ARS3_DESPS/35-118; Cobalamin synthesis G N-terminal
130-228 -26.600 13  PF11761.3; A8FV20_SHESH/134-234; Cobalamin biosynthesis central region
226-344 -39.000 29  PF01890.11; A1AU03_PELPD/230-350; Cobalamin synthesis G C-terminus
353-559 -31.800 16  PF00590.15; A1AUS5_PELPD/5-191; Tetrapyrrole (Corrin/Porphyrin) Methylases
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 PfamA26U 243-277 -22.200 22  PF08238.7; Q5PFP4_SALPA/166-201; Sel1 repeat
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 PfamA26U 292-352 -8.390 11  PF05495.7; A7TR54_VANPO/18-100; CHY zinc finger
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 PfamA26U 5-67 -6.050 11  PF07370.6; A4EER5_9RHOB/7-143; Protein of unknown function (DUF1489 topsan)
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 PfamA26U 56-220 -12.700 12  PF12541.3; C4ZDA1_EUBR3/4-281; Protein of unknown function (DUF3737 topsan)
75-172 -28.800 28  PF13599.1; A5FH08_FLAJ1/44-123; Pentapeptide repeats (9 copies)


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.