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# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 COG1214 4-40 -3.330 37  [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
H.sapiens 15-22 -6.810 75  sp|Q8NEQ6|CA064_HUMAN Uncharacterized protein C1orf64 OS=Homo sapiens GN=C1orf64 PE=2 SV=1
HGM_OVER 3-27 -1.750 20  HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
JCSG1214 1-34 -31.700 73  TM1413 TM1413 283274 Purified-2001-10-16
NEW_HUMAN_DOMAINS 8-34 -4.450 25  sp|Q96M20|CT152_HUMAN Uncharacterized protein C20orf152 OS=Homo sapiens GN=C20orf152 PE=2 SV=2 (Range: 1-78)
PDB1214 16-36 -6.890 47  1fb9_A mol:protein length:33 CALCITONIN ANALOGUE
PfamA27U 1-30 -6.980 30  PF16605; F7G369.1/792-851; LSM-interacting associated unstructured
SCOP175 9-39 -5.170 32  d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
VFDB 5-40 -3.040 25  VFG0068 (gi:16802250) actA - actin-assembly inducing protein precursor [Listeria monocytogenes (serovar 1/2a) EGD-e] (VF0066)
2 TM0002 TM0002 281883 Purified-2001-08-29 41 COG1214 8-35 -3.810 28  [J] COG0256 Ribosomal protein L18
H.sapiens 3-40 -5.270 22  sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 OS=Homo sapiens GN=BAT3 PE=1 SV=2 (Range: 751-1050)
HGM_OVER 1-29 -1.820 13  HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;
JCSG1214 12-20 -5.410 88  TM0391 TM0391 282264 Purified-2001-02-21
NEW_HUMAN_DOMAINS 6-36 -5.910 25  sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2 (Range: 1469-1518)
PDB1214 8-29 -4.450 31  2cmy_B mol:protein length:34 VERONICA HEDERIFOLIA TRYPSIN INHIBITOR
PfamA27U 3-33 -4.860 PF03004.9; Q9M9D8_ARATH/153-297; Plant transposase (Ptta/En/Spm family)
SCOP175 6-40 -4.390 25  d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]}
VFDB 7-40 -4.570 20  VFG1719 (gi:26249433) c3598 - Hypothetical protein [Escherichia coli CFT073]
3 TM0003 TM0003 281884 Purified-2001-12-06 40 COG1214 1-37 -3.800 13  [E] COG4401 Chorismate mutase
H.sapiens 18-38 -4.320 38  sp|Q9UK61|CC063_HUMAN Uncharacterized protein C3orf63 OS=Homo sapiens GN=C3orf63 PE=1 SV=3 (Range: 901-1200)
HGM_OVER 2-38 -2.820 13  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
JCSG1214 15-40 -12.600 50  TM1412 TM1412 283273 Purified-2001-11-13
NEW_HUMAN_DOMAINS 2-39 -5.020 26  sp|Q9NYP8|CU062_HUMAN Uncharacterized protein C21orf62 OS=Homo sapiens GN=C21orf62 PE=1 SV=2 (Range: 160-219)
PDB1214 1-24 -4.500 12  1vry_A mol:protein length:76 Glycine receptor alpha-1 chain
PfamA27U 2-28 -4.040 29  PF15692; G3UI48.1/110-184; NF-kappa-B-activating protein
SCOP175 8-36 -4.450 37  d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 19-35 -1.960 29  VFG2265 (gi:49476227) trwH2 - hypothetical protein [Bartonella henselae Houston-1] (VF0372)
4 TM0004 TM0004 281885 Purified-2004-07-19 31 COG1214 3-30 -2.920 21  [D] COG2917 Intracellular septation protein A
H.sapiens 2-29 -5.090 25  sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1 (Range: 601-900)
HGM_OVER 9-20 -1.450 25  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
JCSG1214 8-27 -10.800 65  TM1412 TM1412 283273 Purified-2001-11-13
NEW_HUMAN_DOMAINS 2-31 -6.150 23  sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1 (Range: 622-678)
PDB1214 4-31 -4.510 10  4kg0_A mol:protein length:169 Protein neuralized
PfamA27U 7-31 -4.800 12  PF04403.8; A6SWU6_JANMA/66-227; Paraquat-inducible protein A
SCOP175 10-29 -3.790 25  d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}
VFDB 4-25 -2.370 13  VFG0020 (gi:33594647) ptlI - putative bacterial secretion system protein [Bordetella pertussis Tohama I] (VF0026)
5 TM0005 TM0005 281886 Purified-2001-01-30 650 COG1214 1-649 -135.000 23  [L] KOG1803 DNA helicase
H.sapiens 2-278 -65.000 33  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 1-300)
135-455 -81.400 36  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 151-450)
339-638 -97.000 33  sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2 (Range: 601-900)
HGM_OVER 2-165 -26.700 16  HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
JCSG1214 118-643 -31.000 20  TM0618 TM0618 282491 Cloned-2003-11-26
170-643 -36.100 23  SP0618A ZP_01960338.1 407062 Selected-2009-11-12
395-650 -87.900 67  TM1411 TM1411 283272 Purified-2001-10-16
NEW_HUMAN_DOMAINS 551-625 -5.950 15  sp|Q8N0U4|F185A_HUMAN Protein FAM185A OS=Homo sapiens GN=FAM185A PE=2 SV=3 (Range: 68-151)
PDB1214 1-649 -140.000 33  4b3f_X mol:protein length:646 DNA-BINDING PROTEIN SMUBP-2
PfamA27U 170-419 -74.100 29  PF13086.1; B6HQI4_PENCW/1305-1589; AAA domain
424-626 -69.600 34  PF13087.1; D3ZG52_RAT/805-1017; AAA domain
SCOP175 169-610 -13.000 16  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
170-448 -16.900 18  d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
VFDB 122-644 -9.930 12  VFG1104 (gi:15641774) VC1771 - hypothetical protein [Vibrio cholerae N16961]
171-645 -57.900 19  VFG1537 (gi:23954221) orf2 - hypothetical protein [Escherichia coli 536]
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 COG1214 1-345 -59.800 16  [E] COG3799 Methylaspartate ammonia-lyase
H.sapiens 1-345 -44.200 17  sp|Q7L5Y1|ENOF1_HUMAN Mitochondrial enolase superfamily member 1 OS=Homo sapiens GN=ENOSF1 PE=1 SV=1
HGM_OVER 193-243 -4.540 PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
JCSG1214 2-345 -73.300 20  FM12054A YP_299980.1 377396 Crystal|NMR-2008-10-17
NEW_HUMAN_DOMAINS 231-294 -5.240 sp|A4D126|ISPD_HUMAN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase-like protein OS=Homo sapiens GN=ISPD PE=3 SV=2 (Range: 299-376)
PDB1214 1-345 -111.000 100  2zad_A mol:protein length:345 Muconate cycloisomerase
PfamA27U 6-123 -38.500 22  PF02746.11; CLCB_PSEPU/5-125; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
126-338 -44.300 16  PF07476.6; O66145_CITAM/161-411; Methylaspartate ammonia-lyase C-terminus
SCOP175 2-124 -47.900 26  d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
126-345 -76.000 37  d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
VFDB 78-279 -5.500 VFG1114 (gi:15641784) nanE - conserved hypothetical protein [Vibrio cholerae N16961]
7 TM0007 TM0007 281888 Purified-2004-07-19 438 COG1214 38-380 -30.900 10  [D] KOG4575 TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis
147-397 -37.800 16  [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases
H.sapiens 90-380 -29.800 11  sp|Q8NBH2|KY_HUMAN Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=1 SV=1
256-438 -21.800 14  sp|P49221|TGM4_HUMAN Protein-glutamine gamma-glutamyltransferase 4 OS=Homo sapiens GN=TGM4 PE=1 SV=2 (Range: 151-450)
HGM_OVER 3-101 -3.550 17  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
JCSG1214 21-438 -108.000 28  SP0007C YP_212378.1 407707 Selected-2009-11-12
NEW_HUMAN_DOMAINS 328-379 -5.190 15  sp|Q9NT68|TEN2_HUMAN Teneurin-2 OS=Homo sapiens GN=ODZ2 PE=1 SV=3 (Range: 2403-2499)
PDB1214 137-400 -38.300 17  3isr_A mol:protein length:293 Transglutaminase-like enzymes, putative cyste
242-433 -9.680 12  4gpq_A mol:protein length:489 Menin
PfamA27U 218-364 -26.300 10  PF14381.1; B9SY16_RICCO/70-280; Ethylene-responsive protein kinase Le-CTR1
259-363 -52.100 18  PF01841.14; Q0W040_UNCMA/73-192; Transglutaminase-like superfamily
316-438 -14.900 11  PF14402.1; A0KIF3_AERHH/186-501; 7 transmembrane helices usually fused to an inactive transglutaminase
SCOP175 177-366 -26.600 16  d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
250-438 -11.200 14  d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
VFDB 4-100 -4.270 12  VFG1699 (gi:26249397) c3562 - Hypothetical protein [Escherichia coli CFT073]
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 COG1214 1-224 -82.000 31  [R] COG1878 Predicted metal-dependent hydrolase
H.sapiens 65-217 -6.450 sp|Q14129|DGCR6_HUMAN Protein DGCR6 OS=Homo sapiens GN=DGCR6 PE=1 SV=3
HGM_OVER 123-216 -2.640 17  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
JCSG1214 35-224 -6.730 12  GS13117A YP_536008.1 384251 Purified-2008-06-17
NEW_HUMAN_DOMAINS 101-218 -5.450 15  tr|B5MCL5|B5MCL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=SMARCB1 PE=4 SV=1 (Range: 1-132)
PDB1214 1-222 -83.100 24  4cob_A mol:protein length:215 KYNURENINE FORMAMIDASE
PfamA27U 2-157 -66.600 20  PF04199.8; A8MEU2_ALKOO/9-169; Putative cyclase
SCOP175 1-224 -80.800 27  d1r61a_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 43-169 -4.640 VFG1945 (gi:15792469) Cj1144c - hypothetical protein Cj1144c [Campylobacter jejuni NCTC 11168] (VF0326)
9 TM0009 TM0009 281890 Purified-2001-02-14 142 COG1214 1-141 -47.600 18  [S] COG1633 Uncharacterized conserved protein
H.sapiens 4-136 -17.000 16  sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 homolog OS=Homo sapiens GN=COQ7 PE=1 SV=3
HGM_OVER 13-140 -4.510 PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
JCSG1214 2-141 -56.100 32  TM1526 TM1526 283383 PDB-2004-04-01
NEW_HUMAN_DOMAINS 107-142 -5.550 13  sp|Q63HK5|TSH3_HUMAN Teashirt homolog 3 OS=Homo sapiens GN=TSHZ3 PE=1 SV=2 (Range: 902-975)
PDB1214 1-141 -55.800 31  1vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate pro
PfamA27U 5-141 -36.200 15  PF09968.4; A6LNR3_THEM4/28-188; Uncharacterized protein domain (DUF2202 topsan)
SCOP175 2-141 -55.100 32  d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
VFDB 1-133 -5.660 VFG1667 (gi:28316247) orf44 - hypothetical protein [Escherichia coli 536]
10 TM0010 TM0010 281891 Purified-2005-03-03 607 COG1214 1-98 -16.700 28  [C] COG3411 Ferredoxin
46-537 -119.000 34  [C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit
125-589 -20.900 21  [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
H.sapiens 78-538 -112.000 35  sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4
511-597 -14.000 27  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
HGM_OVER 489-589 -3.690 16  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
JCSG1214 2-596 -156.000 52  TM1425 TM1425 283285 Purified-2004-02-02
NEW_HUMAN_DOMAINS 452-588 -5.330 16  sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3 (Range: 4233-4375)
PDB1214 3-103 -26.800 29  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
103-536 -111.000 45  2fug_1 mol:protein length:438 NADH-quinone oxidoreductase chain 1
540-594 -20.300 25  2vkr_A mol:protein length:103 ZINC-CONTAINING FERREDOXIN
PfamA27U 158-328 -19.000 28  PF01512.12; A1U014_MARAV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit
434-588 -9.540 14  PF00757.15; INSR_XENLA/189-350; Furin-like cysteine rich region
439-484 -24.100 65  PF10589.4; A7ALS7_9PORP/404-449; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
543-594 -17.400 35  PF14697.1; E4PIH9_MARAH/57-111; 4Fe-4S dicluster domain
SCOP175 6-96 -25.400 31  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
110-349 -87.000 49  d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
351-434 -36.200 44  d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
435-533 -44.900 43  d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
512-598 -39.300 31  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
VFDB 432-592 -8.560 19  VFG0486 (gi:16764735) ttrB - Tetrathionate reductase complex, subunit B [Salmonella enterica (serovar typhimurium) LT2]
11 TM0011 TM0011 281892 Purified-2004-02-02 128 COG1214 2-127 -42.600 23  [C] COG3411 Ferredoxin
H.sapiens 3-119 -16.000 17  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 3-121 -4.190 15  PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;
JCSG1214 6-128 -26.400 23  TM1425 TM1425 283285 Purified-2004-02-02
NEW_HUMAN_DOMAINS 31-123 -7.930 11  sp|Q2QL34|MP17L_HUMAN Mpv17-like protein OS=Homo sapiens GN=MPV17L PE=1 SV=1 (Range: 1-104)
PDB1214 30-128 -42.300 28  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
PfamA27U 6-122 -17.300 15  PF06999.7; Q8YTX4_NOSS1/16-223; Sucrase/ferredoxin-like
35-109 -18.000 18  PF07845.6; A6DYC0_9RHOB/25-139; Protein of unknown function (DUF1636 topsan)
SCOP175 1-119 -15.900 16  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
34-125 -41.200 28  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
VFDB 3-76 -6.240 16  VFG1427 (gi:145697) daaE - fimbrial subunit F1845 [Escherichia coli C1845] (VF0212)
12 TM0012 TM0012 281893 Purified-2001-08-29 176 COG1214 1-172 -85.600 26  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
H.sapiens 1-175 -84.400 29  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 108-175 -4.760 11  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
JCSG1214 16-175 -84.700 41  TM1424 TM1424 283284 Purified-2001-10-22
NEW_HUMAN_DOMAINS 51-147 -6.090 15  sp|O75443|TECTA_HUMAN Alpha-tectorin OS=Homo sapiens GN=TECTA PE=1 SV=3 (Range: 23-162)
PDB1214 16-175 -86.700 27  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
PfamA27U 26-173 -78.300 33  PF01257.14; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
SCOP175 18-175 -86.400 27  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
VFDB 38-143 -7.860 15  VFG0478 (gi:16764063) fur - transcriptional repressor of iron-responsive genes (Fur family) (ferric uptake regulator) [Salmonella enterica (serovar typhimurium) LT2] (VF0113)
13 TM0013 TM0013 281894 Purified-2001-08-24 253 COG1214 1-252 -68.500 15  [C] COG0426 Uncharacterized flavoproteins
H.sapiens 26-234 -27.100 16  sp|Q68D91|MBLC2_HUMAN Metallo-beta-lactamase domain-containing protein 2 OS=Homo sapiens GN=MBLAC2 PE=1 SV=3
HGM_OVER 30-127 -2.900 12  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
JCSG1214 4-253 -94.100 39  FN0013A AFE_0842 378921 Purified-2007-09-27
NEW_HUMAN_DOMAINS 63-222 -6.790 12  tr|Q5T6C3|Q5T6C3_HUMAN Cytochrome b-561 domain containing 1 OS=Homo sapiens GN=CYB561D1 PE=2 SV=1 (Range: 1-128)
PDB1214 1-242 -75.700 15  4fek_A mol:protein length:262 Putative diflavin flavoprotein A 5
PfamA27U 22-240 -24.400 13  PF14597.1; Q3M8K9_ANAVT/1-199; Metallo-beta-lactamase superfamily
SCOP175 1-242 -80.600 17  d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
VFDB 31-227 -5.980 VFG0572 (gi:16767045) slsA - putative inner membrane protein [Salmonella enterica (serovar typhimurium) LT2]
14 TM0014 TM0014 281895 Purified-2001-01-30 278 COG1214 4-277 -43.500 22  [NT] COG0840 Methyl-accepting chemotaxis protein
H.sapiens 21-273 -23.500 sp|Q9Y4G6|TLN2_HUMAN Talin-2 OS=Homo sapiens GN=TLN2 PE=1 SV=4 (Range: 1801-2100)
HGM_OVER 25-160 -5.610 11  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
JCSG1214 4-277 -49.200 20  TM1428 TM1428 283288 Crystal|NMR-2008-02-15
NEW_HUMAN_DOMAINS 10-272 -8.370 tr|E7EQE5|E7EQE5_HUMAN Uncharacterized protein OS=Homo sapiens GN=DNAH3 PE=4 SV=1 (Range: 191-685)
PDB1214 4-277 -53.100 19  2ch7_A mol:protein length:309 METHYL-ACCEPTING CHEMOTAXIS PROTEIN
42-253 -64.200 100  3g67_A mol:protein length:213 Methyl-accepting chemotaxis protein
PfamA27U 8-275 -38.100 PF09599.5; Q7NUS9_CHRVO/1-343; Salmonella-Shigella invasin protein C (IpaC_SipC)
32-263 -49.100 13  PF03532.8; O50963_BORBU/3-255; OMS28 porin
SCOP175 39-188 -9.130 14  d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
VFDB 4-277 -43.500 22  VFG1228 (gi:15595608) pilJ - twitching motility protein PilJ [Pseudomonas aeruginosa PAO1] (VF0082)
15 TM0015 TM0015 281896 PDB-2007-09-14 192 COG1214 7-192 -33.700 21  [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
H.sapiens 1-184 -7.600 11  sp|Q9P0Z9|SOX_HUMAN Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=2 SV=2
HGM_OVER 32-182 -3.000 11  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
JCSG1214 4-191 -70.400 24  TM0406 TM0406 282279 Purified-2001-12-06
NEW_HUMAN_DOMAINS 16-75 -5.090 11  sp|Q93073|SBP2L_HUMAN Selenocysteine insertion sequence-binding protein 2-like OS=Homo sapiens GN=SECISBP2L PE=2 SV=3 (Range: 1-149)
PDB1214 1-192 -100.000 100  2raa_A mol:protein length:204 Pyruvate synthase subunit porC
PfamA27U 16-186 -56.300 20  PF01558.13; Q31EX2_THICR/20-185; Pyruvate ferredoxin/flavodoxin oxidoreductase
SCOP175 7-192 -36.800 18  d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
VFDB 3-164 -6.680 13  VFG0682 (gi:6470209) capB - CapB [Bacillus anthracis] (VF0141)
16 TM0016 TM0016 281897 Purified-2001-08-24 101 COG1214 19-95 -37.500 42  [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit
H.sapiens 28-100 -26.900 34  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
HGM_OVER 39-91 -4.990 18  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
JCSG1214 1-95 -21.900 25  TM0034 TM0034 281915 Purified-2001-08-29
35-96 -29.800 27  TM0879 TM0879 282748 Purified-2001-04-12
NEW_HUMAN_DOMAINS 53-101 -9.380 12  sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 OS=Homo sapiens GN=SLC44A5 PE=2 SV=2 (Range: 99-240)
PDB1214 9-101 -22.400 25  1b0p_A mol:protein length:1231 PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
35-93 -29.500 27  2vkr_A mol:protein length:103 ZINC-CONTAINING FERREDOXIN
PfamA27U 36-90 -26.000 33  PF14697.1; E4PIH9_MARAH/57-111; 4Fe-4S dicluster domain
SCOP175 1-87 -15.300 23  d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}
33-100 -28.400 32  d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
VFDB 37-99 -18.800 23  VFG1591 (gi:23954274) orf57 - hypothetical protein [Escherichia coli 536]
17 TM0017 TM0017 281898 Purified-2003-03-05 394 COG1214 6-393 -92.000 32  [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
H.sapiens 265-368 -9.440 11  sp|P29401|TKT_HUMAN Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3 (Range: 451-623)
HGM_OVER 240-391 -3.080 PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
JCSG1214 5-381 -47.400 29  TM1759 TM1759 283614 Purified-2001-12-11
NEW_HUMAN_DOMAINS 16-122 -5.770 15  sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1 (Range: 3659-3858)
PDB1214 7-393 -73.300 30  1b0p_A mol:protein length:1231 PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
PfamA27U 20-193 -31.800 32  PF01855.14; KORA_ARCFU/14-229; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
265-365 -12.900 17  PF02780.15; O16144_ASCSU/223-346; Transketolase, C-terminal domain
SCOP175 7-256 -78.000 28  d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
257-393 -46.200 32  d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
VFDB 41-325 -4.760 12  VFG1109 (gi:15641779) nanA - N-acetylneuraminate lyase, putative [Vibrio cholerae N16961]
18 TM0018 TM0018 281899 Purified-2001-08-24 324 COG1214 26-251 -35.200 22  [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
H.sapiens 35-226 -7.590 sp|A1L0T0|ILVBL_HUMAN(removed signalp:1-28) Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2 (Range: 301-600)
HGM_OVER 49-241 -4.030 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
JCSG1214 26-259 -41.900 18  TM1760 TM1760 283732 Purified-2001-11-28
NEW_HUMAN_DOMAINS 26-142 -5.410 14  sp|Q96JH7|VCIP1_HUMAN Deubiquitinating protein VCIP135 OS=Homo sapiens GN=VCPIP1 PE=1 SV=2 (Range: 42-180)
PDB1214 5-322 -58.800 27  1b0p_A mol:protein length:1231 PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
PfamA27U 1-226 -9.310 13  PF13292.1; Q1N245_9GAMM/15-286; 1-deoxy-D-xylulose-5-phosphate synthase
SCOP175 5-322 -70.200 27  d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
VFDB 11-307 -5.430 13  VFG1591 (gi:23954274) orf57 - hypothetical protein [Escherichia coli 536]
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 COG1214 2-250 -94.800 34  [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
H.sapiens 4-252 -89.800 32  sp|Q8N4T8|CBR4_HUMAN Carbonyl reductase family member 4 OS=Homo sapiens GN=CBR4 PE=1 SV=3
HGM_OVER 54-256 -3.400 12  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
JCSG1214 2-250 -95.200 38  TM0325 TM0325 282200 Crystal|NMR-2003-02-19
NEW_HUMAN_DOMAINS 133-185 -5.120 18  tr|F5H0X0|F5H0X0_HUMAN Uncharacterized protein OS=Homo sapiens GN=CACNA1C PE=4 SV=1 (Range: 1-100)
PDB1214 2-250 -98.700 31  4gh5_A mol:protein length:269 Short-chain dehydrogenase/reductase SDR
PfamA27U 3-189 -36.300 13  PF08643.5; A3LXU8_PICST/127-422; Fungal family of unknown function (DUF1776 topsan)
14-249 -35.200 13  PF13561.1; A1ZQI0_9BACT/15-256; Enoyl-(Acyl carrier protein) reductase
SCOP175 1-252 -96.700 40  d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}
VFDB 2-250 -86.200 28  VFG0934 (gi:26246575) entA - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Escherichia coli CFT073] (VF0228)
20 TM0020 TM0020 281901 Purified-2001-08-24 127 COG1214 4-127 -63.700 29  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
H.sapiens 12-92 -9.720 25  sp|Q9Y6X4|F169A_HUMAN Protein FAM169A OS=Homo sapiens GN=FAM169A PE=1 SV=2 (Range: 151-450)
16-127 -9.510 10  sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1
HGM_OVER 37-95 -8.520 11  PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
JCSG1214 46-90 -8.030 22  SP18225A ZP_02090735.1 411527 Purified-2010-09-29
NEW_HUMAN_DOMAINS 67-127 -6.830 11  sp|Q8N5Q1|F71E2_HUMAN Protein FAM71E2 OS=Homo sapiens GN=FAM71E2 PE=5 SV=3 (Range: 1-93)
PDB1214 8-126 -8.400 12  4j05_A mol:protein length:530 Phosphate transporter
PfamA27U 6-120 -61.100 32  PF02537.10; A5FV99_ACICJ/73-188; CrcB-like protein
SCOP175 41-124 -5.670 13  d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
VFDB 1-118 -7.340 15  VFG0656 (gi:24114256) SF2992 - orf, conserved hypothetical protein [Shigella flexneri (serotype 2a) 301]


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]