current user: public




Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 COG0113 4-40 -3.390 37  [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
PDB0113 10-39 -6.630 26  2jxc_B mol:protein length:45 Stonin-2
PfamA26U 13-33 -4.760 38  PF07660.9; A6C2R4_9PLAN/303-351; Secretin and TonB N terminus short domain
SCOP175 9-39 -4.820 32  d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
2 TM0002 TM0002 281883 Purified-2001-08-29 41 COG0113 8-35 -4.140 28  [J] COG0256 Ribosomal protein L18
PDB0113 8-29 -4.660 31  2cmy_B mol:protein length:34 VERONICA HEDERIFOLIA TRYPSIN INHIBITOR
PfamA26U 3-33 -5.760 PF03004.9; Q9M9D8_ARATH/153-297; Plant transposase (Ptta/En/Spm family)
SCOP175 6-40 -4.730 25  d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]}
3 TM0003 TM0003 281884 Purified-2001-12-06 40 COG0113 1-37 -3.940 13  [E] COG4401 Chorismate mutase
PDB0113 1-24 -4.580 12  1vry_A mol:protein length:76 Glycine receptor alpha-1 chain
PfamA26U 23-39 -4.350 35  PF01840.12; TCL1A_MOUSE/1-111; TCL1/MTCP1 family
SCOP175 8-36 -4.430 24  d1ufya_ d.79.1.2 (A:) Chorismate mutase {Thermus thermophilus [TaxId: 274]}
4 TM0004 TM0004 281885 Purified-2004-07-19 31 COG0113 11-24 -2.740 50  [S] COG3360 Uncharacterized conserved protein
PDB0113 4-31 -4.180 10  2yue_A mol:protein length:168 Protein neuralized
PfamA26U 6-31 -4.780 15  PF02791.12; Q7RXP4_NEUCR/357-420; DDT domain
SCOP175 11-31 -3.120 33  d1wlfa1 d.31.1.1 (A:100-179) Peroxisome biogenesis factor 1 (PEX-1), domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
5 TM0005 TM0005 281886 Purified-2001-01-30 650 COG0113 2-649 -125.000 24  [L] KOG1803 DNA helicase
PDB0113 1-649 -130.000 33  4b3f_X mol:protein length:646 DNA-BINDING PROTEIN SMUBP-2
PfamA26U 170-419 -66.500 30  PF13086.1; B6HQI4_PENCW/1305-1589; AAA domain
424-626 -73.800 33  PF13087.1; D3ZG52_RAT/805-1017; AAA domain
SCOP175 169-627 -14.100 16  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
170-448 -17.600 18  d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 COG0113 4-345 -66.800 19  [H] COG1441 O-succinylbenzoate synthase
PDB0113 1-345 -102.000 100  2zad_A mol:protein length:345 Muconate cycloisomerase
PfamA26U 6-123 -43.000 22  PF02746.11; CLCB_PSEPU/5-125; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
113-320 -35.300 16  PF07476.6; O66145_CITAM/161-411; Methylaspartate ammonia-lyase C-terminus
SCOP175 2-124 -51.500 26  d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
126-345 -67.600 37  d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
7 TM0007 TM0007 281888 Purified-2004-07-19 438 COG0113 12-434 -29.400 12  [O] KOG0909 Peptide:N-glycanase
38-368 -37.000 11  [D] KOG4575 TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis
147-404 -52.700 16  [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases
PDB0113 4-371 -30.700 11  3kd4_A mol:protein length:506 Putative protease
143-419 -54.500 18  3isr_A mol:protein length:293 Transglutaminase-like enzymes, putative cyste
PfamA26U 229-364 -32.900 11  PF14381.1; B9SY16_RICCO/70-280; Ethylene-responsive protein kinase Le-CTR1
259-363 -56.500 18  PF01841.14; Q0W040_UNCMA/73-192; Transglutaminase-like superfamily
316-438 -16.800 12  PF14402.1; A4SPP0_AERS4/186-501; 7 transmembrane helices usually fused to an inactive transglutaminase
SCOP175 177-435 -34.000 15  d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 COG0113 1-224 -84.600 31  [R] COG1878 Predicted metal-dependent hydrolase
PDB0113 1-224 -83.500 27  1r61_A mol:protein length:207 metal-dependent hydrolase
PfamA26U 2-158 -68.700 19  PF04199.8; A8MEU2_ALKOO/9-169; Putative cyclase
SCOP175 1-224 -84.400 27  d1r61a_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus [TaxId: 1422]}
9 TM0009 TM0009 281890 Purified-2001-02-14 142 COG0113 1-141 -46.900 19  [S] COG1633 Uncharacterized conserved protein
PDB0113 1-141 -53.100 32  1vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate pro
PfamA26U 5-141 -44.300 15  PF09968.4; A6LNR3_THEM4/28-188; Uncharacterized protein domain (DUF2202 topsan)
SCOP175 2-141 -53.400 32  d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
10 TM0010 TM0010 281891 Purified-2005-03-03 607 COG0113 24-547 -44.000 16  [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
46-537 -117.000 34  [C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit
405-597 -31.900 25  [C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
PDB0113 3-103 -23.400 29  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
103-536 -108.000 45  2fug_1 mol:protein length:438 NADH-quinone oxidoreductase chain 1
540-598 -23.600 25  2vkr_A mol:protein length:103 ZINC-CONTAINING FERREDOXIN
PfamA26U 2-81 -9.860 21  PF01257.14; Q1HPR5_BOMMO/56-203; Respiratory-chain NADH dehydrogenase 24 Kd subunit
158-329 -36.800 27  PF01512.12; A1U014_MARAV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit
431-589 -9.710 13  PF00757.15; INSR_XENLA/189-350; Furin-like cysteine rich region
439-484 -22.200 65  PF10589.4; A7ALS7_9PORP/404-449; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
547-593 -19.100 42  PF13187.1; Q8PZV2_METMA/251-319; 4Fe-4S dicluster domain
SCOP175 5-96 -23.100 31  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
110-349 -86.100 49  d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
351-434 -33.800 44  d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
435-533 -44.600 43  d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
518-598 -33.800 31  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
11 TM0011 TM0011 281892 Purified-2004-02-02 128 COG0113 1-127 -48.500 23  [C] COG3411 Ferredoxin
PDB0113 30-128 -48.900 28  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
PfamA26U 14-110 -24.100 18  PF01257.14; Q1HPR5_BOMMO/56-203; Respiratory-chain NADH dehydrogenase 24 Kd subunit
SCOP175 3-119 -22.200 16  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
33-125 -47.200 28  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
12 TM0012 TM0012 281893 Purified-2001-08-29 176 COG0113 1-175 -85.100 30  [C] KOG3196 NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit
PDB0113 16-175 -87.800 27  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
PfamA26U 26-173 -81.200 34  PF01257.14; Q1HPR5_BOMMO/56-203; Respiratory-chain NADH dehydrogenase 24 Kd subunit
SCOP175 18-175 -87.800 27  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
13 TM0013 TM0013 281894 Purified-2001-08-24 253 COG0113 1-252 -70.500 15  [C] COG0426 Uncharacterized flavoproteins
PDB0113 1-243 -83.400 13  4fek_A mol:protein length:262 Putative diflavin flavoprotein A 5
PfamA26U 28-238 -15.700 15  PF14234.1; B4VMX6_9CYAN/40-360; Domain of unknown function (DUF4336 topsan)
SCOP175 1-242 -82.300 17  d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
14 TM0014 TM0014 281895 Purified-2001-01-30 278 COG0113 4-277 -41.600 22  [NT] COG0840 Methyl-accepting chemotaxis protein
PDB0113 4-277 -52.600 19  2ch7_A mol:protein length:309 METHYL-ACCEPTING CHEMOTAXIS PROTEIN
42-253 -61.600 100  3g67_A mol:protein length:213 Methyl-accepting chemotaxis protein
PfamA26U 27-263 -31.400 10  PF03532.8; O50963_BORBU/3-255; OMS28 porin
82-277 -38.700 22  PF00015.16; MCPC_SALTY/323-517; Methyl-accepting chemotaxis protein (MCP) signalling domain
SCOP175 39-188 -10.100 14  d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
15 TM0015 TM0015 281896 PDB-2007-09-14 192 COG0113 7-192 -48.500 23  [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
PDB0113 1-192 -94.700 100  2raa_A mol:protein length:204 Pyruvate synthase subunit porC
PfamA26U 16-186 -59.600 20  PF01558.13; Q31EX2_THICR/20-185; Pyruvate ferredoxin/flavodoxin oxidoreductase
SCOP175 6-192 -59.100 20  d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
16 TM0016 TM0016 281897 Purified-2001-08-24 101 COG0113 1-100 -35.100 25  [C] KOG3256 NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit
PDB0113 1-100 -31.100 28  2fug_9 mol:protein length:182 NADH-quinone oxidoreductase chain 9
35-93 -31.400 27  1xer_A mol:protein length:103 FERREDOXIN
PfamA26U 42-88 -20.300 31  PF13187.1; Q8PZV2_METMA/251-319; 4Fe-4S dicluster domain
SCOP175 28-100 -31.900 34  d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}
17 TM0017 TM0017 281898 Purified-2003-03-05 394 COG0113 6-393 -107.000 32  [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
PDB0113 7-393 -73.200 30  1b0p_A mol:protein length:1231 PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
PfamA26U 20-197 -36.300 31  PF01855.14; KORA_ARCFU/14-229; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
265-365 -12.600 17  PF02780.15; O16144_ASCSU/223-346; Transketolase, C-terminal domain
SCOP175 7-256 -92.800 28  d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
257-393 -45.700 32  d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
18 TM0018 TM0018 281899 Purified-2001-08-24 324 COG0113 13-314 -57.000 18  [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
PDB0113 4-322 -56.800 27  1b0p_A mol:protein length:1231 PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
PfamA26U 55-224 -10.000 16  PF02775.16; Q6LZH8_METMP/393-541; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
SCOP175 4-318 -67.500 27  d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 COG0113 5-252 -92.400 29  [R] KOG0725 Reductases with broad range of substrate specificities
PDB0113 2-250 -97.600 31  4GH5 Entity 1(prereleased)
PfamA26U 13-249 -52.100 13  PF13561.1; A1ZQI0_9BACT/15-256; Enoyl-(Acyl carrier protein) reductase
SCOP175 1-252 -95.100 40  d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}
20 TM0020 TM0020 281901 Purified-2001-08-24 127 COG0113 4-127 -61.400 29  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
PDB0113 37-124 -7.910 13  1oed_E mol:protein length:260 ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN
PfamA26U 6-121 -59.800 31  PF02537.10; A5FV99_ACICJ/73-188; CrcB-like protein
SCOP175 41-124 -6.440 11  d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}


FFAS is supported by the NIH grant R01-GM087218-01
6 0 5 4 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]