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# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 COG0516 5-33 -4.270 23  [Y] KOG2992 Nucleolar GTPase/ATPase p130
H.sapiens 15-22 -6.870 75  sp|Q8NEQ6|CA064_HUMAN Uncharacterized protein C1orf64 OS=Homo sapiens GN=C1orf64 PE=2 SV=1
HGM_OVER 3-27 -1.750 20  HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
JCSG0516 1-34 -31.600 73  TM1413 TM1413 283274 Purified-2001-10-16
NEW_HUMAN_DOMAINS 8-34 -4.420 25  sp|Q96M20|CT152_HUMAN Uncharacterized protein C20orf152 OS=Homo sapiens GN=C20orf152 PE=2 SV=2 (Range: 1-78)
PDB0516 10-39 -7.340 26  2jxc_B mol:protein length:45 Stonin-2
PfamA30U 15-22 -6.060 75  PF15547.4; F6RD88_HORSE/33-169; Domain of unknown function (DUF4654 topsan)
SCOP206 9-39 -4.960 32  d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
VFDB 4-40 -2.710 25  VFG000068(gi:16802250) (actA) actin-assembly inducing protein precursor [ActA (VF0066)] [Listeria monocytogenes EGD-e]
2 TM0002 TM0002 281883 Purified-2001-08-29 41 COG0516 8-35 -3.680 28  [J] COG0256 Ribosomal protein L18
H.sapiens 3-40 -4.990 22  sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 OS=Homo sapiens GN=BAT3 PE=1 SV=2 (Range: 751-1050)
HGM_OVER 4-41 -1.880 PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;
JCSG0516 12-20 -5.220 88  TM0391 TM0391 282264 Purified-2001-02-21
NEW_HUMAN_DOMAINS 12-40 -5.680 27  tr|F8VX55|F8VX55_HUMAN Uncharacterized protein OS=Homo sapiens GN=TFCP2 PE=4 SV=1 (Range: 1-54)
PDB0516 8-29 -4.300 31  2cmy_B mol:protein length:34 VERONICA HEDERIFOLIA TRYPSIN INHIBITOR
PfamA30U 4-33 -4.320 16  PF17196.2; Q82NZ0_STRAW/1-65; Protein of unknown function (DUF5133 topsan)
SCOP206 8-35 -4.880 32  d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
VFDB 7-36 -2.610 20  VFG001009(gi:31983791) (spa13) type III secretion system stalk protein Spa13 [TTSS (VF0118)] [Shigella flexneri 2a str. 301]
3 TM0003 TM0003 281884 Purified-2001-12-06 40 COG0516 1-37 -3.980 13  [E] COG4401 Chorismate mutase
H.sapiens 2-34 -4.490 29  sp|Q9H6U8|ALG9_HUMAN Alpha-1,2-mannosyltransferase ALG9 OS=Homo sapiens GN=ALG9 PE=1 SV=2 (Range: 1-300)
HGM_OVER 4-38 -2.460 17  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
JCSG0516 15-40 -12.600 50  TM1412 TM1412 283273 Purified-2001-11-13
NEW_HUMAN_DOMAINS 2-39 -4.970 26  sp|Q9NYP8|CU062_HUMAN Uncharacterized protein C21orf62 OS=Homo sapiens GN=C21orf62 PE=1 SV=2 (Range: 160-219)
PDB0516 1-24 -4.320 12  1vry_A mol:protein length:76 Glycine receptor alpha-1 chain
PfamA30U 12-40 -4.840 PF00847.18; Q4N1F5_THEPA/211-264; AP2 domain
SCOP206 17-40 -4.170 12  d2idob_ a.237.1.1 (B:) Homolog of theta (HOT) {Bacteriophage P1 [TaxId: 10678]}
VFDB 2-40 -1.700 25  VFG042553(gi:209921907) (faeE) fimbrial chaperone FaeE [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]
4 TM0004 TM0004 281885 Purified-2004-07-19 31 COG0516 3-30 -3.030 21  [D] COG2917 Intracellular septation protein A
H.sapiens 6-16 -5.790 sp|Q6EEV4|GL1AD_HUMAN Protein GRINL1A, isoforms 4/5 OS=Homo sapiens GN=GRINL1A PE=2 SV=1
HGM_OVER 2-28 -1.280 11  PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
JCSG0516 8-31 -9.900 50  TM0003 TM0003 281884 Purified-2001-12-06
NEW_HUMAN_DOMAINS 2-31 -6.040 23  sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1 (Range: 622-678)
PDB0516 4-31 -4.750 10  4kg0_A mol:protein length:169 Protein neuralized
PfamA30U 7-31 -4.900 20  PF04403.11; B3EAR6_GEOLS/49-206; Paraquat-inducible protein A
SCOP206 10-29 -3.660 25  d2wsda3 b.6.1.0 (A:357-512) automated matches {Bacillus subtilis [TaxId: 1423]}
VFDB 1-29 -3.060 31  VFG032965(gi:16802482) (lntA) listeria nuclear targeted protein A [LntA (VF0440)] [Listeria monocytogenes EGD-e]
5 TM0005 TM0005 281886 Purified-2001-01-30 650 COG0516 2-649 -140.000 23  [L] KOG1803 DNA helicase
H.sapiens 2-278 -69.100 33  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 1-300)
135-455 -89.400 36  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 151-450)
339-638 -97.500 34  sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2 (Range: 601-900)
HGM_OVER 1-166 -29.700 16  HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
JCSG0516 170-643 -28.700 22  TM0618 TM0618 282491 Cloned-2003-11-26
395-650 -88.500 67  TM1411 TM1411 283272 Purified-2001-10-16
NEW_HUMAN_DOMAINS 176-319 -6.510 12  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB0516 1-647 -147.000 34  4b3f_X mol:protein length:646 DNA-BINDING PROTEIN SMUBP-2
PfamA30U 170-419 -70.700 29  PF13086.4; B6HQI4_PENRW/1305-1589; AAA domain
424-626 -69.000 34  PF13087.4; DNA2_RAT/805-1017; AAA domain
SCOP206 136-448 -15.400 17  d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
169-619 -14.200 16  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
VFDB 549-647 -8.150 15  VFG013357(gi:30995407) (orfE) lipopolysaccharide biosynthesis protein [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 COG0516 9-345 -60.700 16  [E] COG3799 Methylaspartate ammonia-lyase
H.sapiens 1-345 -39.000 16  sp|Q7L5Y1|ENOF1_HUMAN Mitochondrial enolase superfamily member 1 OS=Homo sapiens GN=ENOSF1 PE=1 SV=1
HGM_OVER 193-243 -5.030 PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
JCSG0516 3-345 -78.400 20  FM12054A YP_299980.1 377396 Crystal|NMR-2008-10-17
NEW_HUMAN_DOMAINS 156-270 -5.470 12  sp|Q96F46|I17RA_HUMAN Interleukin-17 receptor A OS=Homo sapiens GN=IL17RA PE=1 SV=2 (Range: 536-643)
PDB0516 1-345 -115.000 100  2zad_A mol:protein length:345 Muconate cycloisomerase
PfamA30U 6-123 -39.300 22  PF02746.14; CLCB_PSEPU/5-125; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
116-335 -45.500 14  PF07476.9; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus
SCOP206 2-124 -54.800 100  d2zada1 d.54.1.0 (A:2-124) automated matches {Thermotoga maritima [TaxId: 243274]}
126-345 -92.800 100  d2zada2 c.1.11.0 (A:125-345) automated matches {Thermotoga maritima [TaxId: 243274]}
VFDB 8-305 -4.400 13  VFG041307(gi:52842182) (pieC/lirE) Dot/Icm type IV secretion system effector PieC/LirE [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
7 TM0007 TM0007 281888 Purified-2004-07-19 438 COG0516 56-364 -29.200 10  [R] COG1800 Predicted transglutaminase-like proteases
147-397 -32.900 16  [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases
238-429 -20.500 13  [D] COG5279 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain
H.sapiens 111-380 -23.500 12  sp|Q8NBH2|KY_HUMAN Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=1 SV=1
310-437 -11.500 14  sp|P00488|F13A_HUMAN Coagulation factor XIII A chain OS=Homo sapiens GN=F13A1 PE=1 SV=4 (Range: 301-600)
HGM_OVER 3-101 -4.860 17  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
JCSG0516 21-438 -113.000 28  SP0007C YP_212378.1 407707 Selected-2009-11-12
NEW_HUMAN_DOMAINS 328-379 -4.660 15  sp|Q9NT68|TEN2_HUMAN Teneurin-2 OS=Homo sapiens GN=ODZ2 PE=1 SV=3 (Range: 2403-2499)
PDB0516 10-364 -20.200 11  3kd4_A mol:protein length:506 Putative protease
136-397 -29.400 18  3isr_A mol:protein length:293 Transglutaminase-like enzymes, putative cyste
242-403 -31.500 14  4xz7_A mol:protein length:399 Putative uncharacterized protein
PfamA30U 209-362 -13.000 14  PF14381.4; K4BU86_SOLLC/288-498; Ethylene-responsive protein kinase Le-CTR1
259-363 -47.800 18  PF01841.17; Q0W040_METAR/73-192; Transglutaminase-like superfamily
318-438 -14.600 PF14402.4; A0KIF3_AERHH/188-499; 7 transmembrane helices usually fused to an inactive transglutaminase
SCOP206 177-434 -19.100 15  d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 263-363 -8.830 13  VFG041245(gi:52840540) (lem2) Dot/Icm type IV secretion system effector Lem2 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 COG0516 1-224 -79.800 31  [R] COG1878 Predicted metal-dependent hydrolase
H.sapiens 29-189 -6.250 12  sp|P21964|COMT_HUMAN(removed signalp:1-32) Catechol O-methyltransferase OS=Homo sapiens GN=COMT PE=1 SV=2
HGM_OVER 123-206 -2.710 16  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
JCSG0516 1-157 -6.730 11  SP5305M ZP_01960294.1 406811 Purified-2010-09-29
NEW_HUMAN_DOMAINS 101-219 -6.480 13  tr|B5MCL5|B5MCL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=SMARCB1 PE=4 SV=1 (Range: 1-132)
PDB0516 1-222 -81.200 23  4cog_A mol:protein length:215 KYNURENINE FORMAMIDASE
PfamA30U 3-157 -57.000 23  PF04199.11; B9JI03_AGRRK/6-186; Putative cyclase
SCOP206 2-222 -81.500 23  d4coga_ c.8.8.0 (A:) automated matches {Burkholderia cenocepacia [TaxId: 216591]}
VFDB 130-224 -4.580 VFG000800(gi:15804217) (espA) Type III secretion system translocator protein EspA [EspA (VF0198)] [Escherichia coli O157:H7 str. EDL933]
9 TM0009 TM0009 281890 Purified-2001-02-14 142 COG0516 1-141 -49.100 18  [S] COG1633 Uncharacterized conserved protein
H.sapiens 4-136 -15.500 16  sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 homolog OS=Homo sapiens GN=COQ7 PE=1 SV=3
HGM_OVER 13-140 -4.220 PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
JCSG0516 2-141 -58.100 32  TM1526 TM1526 283383 PDB-2004-04-01
NEW_HUMAN_DOMAINS 108-142 -5.880 14  sp|Q63HK5|TSH3_HUMAN Teashirt homolog 3 OS=Homo sapiens GN=TSHZ3 PE=1 SV=2 (Range: 902-975)
PDB0516 1-141 -57.200 31  1vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate pro
PfamA30U 5-140 -33.100 15  PF09968.7; A6LNR3_THEM4/28-188; Uncharacterized protein domain (DUF2202 topsan)
SCOP206 2-141 -58.100 32  d1vjxa1 a.25.1.1 (A:1-145) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
VFDB 4-142 -5.310 13  VFG012788(gi:31983554) (ospD1) type III secretion system effector OspD1 [T3SS (SS011)] [Shigella flexneri 2a str. 301]
10 TM0010 TM0010 281891 Purified-2005-03-03 607 COG0516 1-98 -16.200 27  [C] COG3411 Ferredoxin
52-537 -107.000 34  [C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit
542-597 -20.000 37  [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit
H.sapiens 78-538 -102.000 35  sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4
511-597 -13.200 27  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
HGM_OVER 489-589 -2.930 16  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
JCSG0516 2-596 -150.000 52  TM1425 TM1425 283285 Purified-2004-02-02
NEW_HUMAN_DOMAINS 436-539 -5.430 13  sp|Q6N043|Z280D_HUMAN Zinc finger protein 280D OS=Homo sapiens GN=ZNF280D PE=1 SV=3 (Range: 618-723)
PDB0516 3-103 -26.800 29  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
103-536 -102.000 45  2fug_1 mol:protein length:438 NADH-quinone oxidoreductase chain 1
540-594 -19.700 25  2vkr_A mol:protein length:103 ZINC-CONTAINING FERREDOXIN
PfamA30U 8-87 -11.500 20  PF07845.9; K9UG38_9CHRO/7-125; Protein of unknown function (DUF1636 topsan)
158-328 -18.400 28  PF01512.15; A1U014_MARHV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit
440-524 -41.200 36  PF10589.7; C6WX56_METML/343-427; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
543-594 -17.200 34  PF14697.4; E4PIH9_MARAH/57-111; 4Fe-4S dicluster domain
SCOP206 6-96 -25.300 31  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
104-349 -82.100 48  d3iam11 c.142.1.1 (1:2-249) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
351-434 -37.400 44  d3iam12 d.15.13.0 (1:250-333) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
435-536 -46.700 42  d3iam13 a.29.12.0 (1:334-438) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
512-598 -40.700 31  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
VFDB 78-523 -6.390 15  VFG000029(gi:33591342) (bplL) lipopolysaccharide biosynthesis protein [LPS (VF0033)] [Bordetella pertussis Tohama I]
11 TM0011 TM0011 281892 Purified-2004-02-02 128 COG0516 2-127 -38.000 24  [C] COG3411 Ferredoxin
H.sapiens 3-119 -15.400 17  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 2-121 -4.260 15  PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;
JCSG0516 6-128 -26.800 23  TM1425 TM1425 283285 Purified-2004-02-02
NEW_HUMAN_DOMAINS 31-123 -7.880 11  sp|Q2QL34|MP17L_HUMAN Mpv17-like protein OS=Homo sapiens GN=MPV17L PE=1 SV=1 (Range: 1-104)
PDB0516 30-128 -38.400 28  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
PfamA30U 3-110 -16.200 22  PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
35-120 -23.200 16  PF07845.9; K9UG38_9CHRO/7-125; Protein of unknown function (DUF1636 topsan)
SCOP206 3-119 -14.500 16  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
34-125 -37.300 28  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
VFDB 3-74 -6.470 VFG042428(gi:2196861) (afaE-II) afimbrial adhesin AfaE-II protein [Afimbrial adhesin, AFA-II, chloramphenicol-resistant adhesin (AI011)] [Escherichia coli str. A22]
12 TM0012 TM0012 281893 Purified-2001-08-29 176 COG0516 1-172 -81.500 26  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
H.sapiens 1-174 -76.800 30  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 27-175 -4.700 12  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
JCSG0516 19-175 -83.100 41  TM1424 TM1424 283284 Purified-2001-10-22
NEW_HUMAN_DOMAINS 19-91 -6.840 16  sp|Q49AR2|CE022_HUMAN UPF0489 protein C5orf22 OS=Homo sapiens GN=C5orf22 PE=1 SV=2 (Range: 258-442)
PDB0516 16-174 -79.100 27  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
PfamA30U 26-173 -71.100 34  PF01257.17; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
SCOP206 17-174 -78.800 27  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
VFDB 108-175 -6.670 16  VFG021800(gi:15608484) (mbtL) Acyl carrier protein (ACP) MbtL [mycobactin (IA031)] [Mycobacterium tuberculosis H37Rv]
13 TM0013 TM0013 281894 Purified-2001-08-24 253 COG0516 1-252 -66.300 15  [C] COG0426 Uncharacterized flavoproteins
H.sapiens 29-237 -25.600 15  sp|Q68D91|MBLC2_HUMAN Metallo-beta-lactamase domain-containing protein 2 OS=Homo sapiens GN=MBLAC2 PE=1 SV=3
HGM_OVER 27-127 -2.960 13  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
JCSG0516 4-253 -94.000 39  FN0013A AFE_0842 378921 Purified-2007-09-27
NEW_HUMAN_DOMAINS 34-167 -5.560 15  sp|Q8N201|INT1_HUMAN Integrator complex subunit 1 OS=Homo sapiens GN=INTS1 PE=1 SV=2 (Range: 113-266)
PDB0516 1-242 -75.400 14  4fek_A mol:protein length:262 Putative diflavin flavoprotein A 5
PfamA30U 22-240 -24.600 13  PF14597.4; K9Q9I8_9NOSO/1-199; Metallo-beta-lactamase superfamily
SCOP206 1-243 -77.400 19  d2q9ua1 d.157.1.3 (A:4-253) Nitric oxide reductase N-terminal domain {Giardia intestinalis [TaxId: 5741]}
VFDB 37-213 -5.790 10  VFG001232(gi:15595611) (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
14 TM0014 TM0014 281895 Purified-2001-01-30 278 COG0516 4-277 -41.800 22  [NT] COG0840 Methyl-accepting chemotaxis protein
H.sapiens 14-273 -20.800 sp|Q9Y4G6|TLN2_HUMAN Talin-2 OS=Homo sapiens GN=TLN2 PE=1 SV=4 (Range: 1801-2100)
HGM_OVER 8-160 -5.560 15  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
JCSG0516 4-277 -48.200 20  TM1428 TM1428 283288 Crystal|NMR-2008-02-15
NEW_HUMAN_DOMAINS 55-274 -7.880 10  sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1 (Range: 234-801)
PDB0516 4-277 -52.600 19  2ch7_A mol:protein length:309 METHYL-ACCEPTING CHEMOTAXIS PROTEIN
41-253 -67.100 100  3g67_A mol:protein length:213 Methyl-accepting chemotaxis protein
PfamA30U 1-275 -26.700 PF06109.11; K7JEL9_NASVI/32-340; Haemolysin E (HlyE)
32-263 -45.200 11  PF03532.11; O50963_BORBU/3-255; OMS28 porin
SCOP206 39-188 -8.130 14  d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
VFDB 4-277 -44.300 19  VFG043367(gi:15644733) (tlpB) membrane-bound chemoreceptor sensing pH and autoinducer-2 [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
21-245 -45.500 22  VFG043378(gi:15645224) (cheV3) chemotaxis coupling protein CheV3 [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
15 TM0015 TM0015 281896 PDB-2007-09-14 192 COG0516 7-192 -29.500 21  [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
H.sapiens 1-184 -8.690 11  sp|Q9P0Z9|SOX_HUMAN Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=2 SV=2
HGM_OVER 41-182 -2.670 12  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
JCSG0516 4-191 -62.500 24  TM0406 TM0406 282279 Purified-2001-12-06
NEW_HUMAN_DOMAINS 14-75 -4.870 11  sp|Q93073|SBP2L_HUMAN Selenocysteine insertion sequence-binding protein 2-like OS=Homo sapiens GN=SECISBP2L PE=2 SV=3 (Range: 1-149)
PDB0516 1-192 -99.700 100  2raa_A mol:protein length:204 Pyruvate synthase subunit porC
PfamA30U 14-186 -52.900 21  PF01558.16; Q67PU1_SYMTH/11-175; Pyruvate ferredoxin/flavodoxin oxidoreductase
SCOP206 6-192 -32.400 18  d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
VFDB 2-164 -5.940 13  VFG000682(gi:6470209) (capB) CapB, involved in Poly-gamma-glutamate synthesis [Capsule (VF0141)] [Bacillus anthracis]
16 TM0016 TM0016 281897 Purified-2001-08-24 101 COG0516 8-95 -37.800 40  [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit
H.sapiens 28-100 -24.300 34  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
HGM_OVER 39-91 -4.220 18  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
JCSG0516 1-100 -14.700 19  MH1183D YP_001087037.1 394340 Crystal|NMR-2009-11-11
35-96 -31.100 27  TM0879 TM0879 282748 Purified-2001-04-12
NEW_HUMAN_DOMAINS 53-101 -8.810 12  sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 OS=Homo sapiens GN=SLC44A5 PE=2 SV=2 (Range: 99-240)
PDB0516 2-98 -36.900 40  5c4i_B mol:protein length:315 Oxalate oxidoreductase subunit delta
PfamA30U 36-90 -27.600 32  PF14697.4; E4PIH9_MARAH/57-111; 4Fe-4S dicluster domain
SCOP206 1-98 -15.000 21  d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}
35-93 -28.200 27  d1xera_ d.58.1.3 (A:) Ferredoxin {Sulfolobus sp. [TaxId: 2288]}
VFDB 56-95 -5.350 VFG000136(gi:15595962) (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
17 TM0017 TM0017 281898 Purified-2003-03-05 394 COG0516 6-394 -96.500 31  [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
H.sapiens 265-368 -8.680 13  sp|Q9H0I9|TKTL2_HUMAN Transketolase-like protein 2 OS=Homo sapiens GN=TKTL2 PE=1 SV=1 (Range: 451-626)
HGM_OVER 240-363 -2.860 10  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
JCSG0516 6-381 -47.500 29  TM1759 TM1759 283614 Purified-2001-12-11
NEW_HUMAN_DOMAINS 11-48 -6.380 27  sp|Q68CZ2|TENS3_HUMAN Tensin-3 OS=Homo sapiens GN=TNS3 PE=1 SV=2 (Range: 774-862)
PDB0516 6-393 -122.000 34  5c4i_A mol:protein length:395 Oxalate oxidoreductase subunit alpha
PfamA30U 20-193 -33.500 32  PF01855.17; KORA_ARCFU/14-229; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
267-370 -21.100 23  PF17147.2; Q1IT45_KORVE/244-338; Pyruvate:ferredoxin oxidoreductase core domain II
SCOP206 7-256 -76.700 29  d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
257-394 -49.700 29  d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
VFDB 16-381 -4.480 VFG000310(gi:15644954) (neuA/flmD) CMP-N-acetylneuraminic acid synthetase [Lewis antigen (VF0057)] [Helicobacter pylori 26695]
18 TM0018 TM0018 281899 Purified-2001-08-24 324 COG0516 26-290 -31.800 18  [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
H.sapiens 35-226 -6.770 sp|A1L0T0|ILVBL_HUMAN(removed signalp:1-28) Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2 (Range: 301-600)
HGM_OVER 49-241 -4.400 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
JCSG0516 26-259 -37.600 19  TM1760 TM1760 283732 Purified-2001-11-28
26-302 -31.900 15  TM1165 TM1165 283031 Purified-2001-11-06
NEW_HUMAN_DOMAINS 26-142 -5.480 14  sp|Q96JH7|VCIP1_HUMAN Deubiquitinating protein VCIP135 OS=Homo sapiens GN=VCPIP1 PE=1 SV=2 (Range: 42-180)
PDB0516 6-321 -105.000 39  5c4i_C mol:protein length:314 Oxalate oxidoreductase subunit beta
PfamA30U 1-226 -9.380 16  PF13292.4; DXS_HELMI/5-280; 1-deoxy-D-xylulose-5-phosphate synthase
SCOP206 5-324 -61.200 26  d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
VFDB 41-194 -5.420 14  VFG000915(gi:26247119) (focH) F1C Putative fimbrial adhesin precursor [F1C fimbriae (VF0224)] [Escherichia coli CFT073]
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 COG0516 2-251 -88.100 34  [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
H.sapiens 2-250 -89.500 34  sp|Q9BPX1|DHB14_HUMAN 17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1
HGM_OVER 5-104 -3.390 17  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
JCSG0516 2-250 -92.700 38  TM0325 TM0325 282200 Crystal|NMR-2003-02-19
NEW_HUMAN_DOMAINS 56-91 -5.150 16  tr|Q6ZNX1|Q6ZNX1_HUMAN CDNA FLJ26957 fis, clone SLV00486 OS=Homo sapiens PE=2 SV=1 (Range: 176-250)
PDB0516 4-256 -97.200 44  3ged_A mol:protein length:247 Short-chain dehydrogenase/reductase SDR
PfamA30U 5-195 -73.300 33  PF00106.23; YOXD_BACSU/7-201; short chain dehydrogenase
10-248 -33.200 22  PF13561.4; I0I4U0_CALAS/13-250; Enoyl-(Acyl carrier protein) reductase
SCOP206 2-250 -94.700 31  d4gh5a_ c.2.1.0 (A:) automated matches {Xanthobacter autotrophicus [TaxId: 78245]}
VFDB 1-250 -80.300 23  VFG001922(gi:15792655) (ptmA) flagellin modification protein A [Flagella (VF0114)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
20 TM0020 TM0020 281901 Purified-2001-08-24 127 COG0516 4-127 -65.200 29  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
H.sapiens 1-118 -10.100 13  sp|Q9BSE2|TMM79_HUMAN Transmembrane protein 79 OS=Homo sapiens GN=TMEM79 PE=1 SV=1
HGM_OVER 24-95 -8.280 PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
JCSG0516 46-90 -7.820 22  SP18225A ZP_02090735.1 411527 Purified-2010-09-29
NEW_HUMAN_DOMAINS 19-119 -6.740 sp|Q9GZU1|MCLN1_HUMAN Mucolipin-1 OS=Homo sapiens GN=MCOLN1 PE=1 SV=1 (Range: 43-298)
PDB0516 1-127 -61.400 27  5a40_A mol:protein length:128 PUTATIVE FLUORIDE ION TRANSPORTER CRCB
PfamA30U 7-120 -58.800 33  PF02537.13; CRCB2_BACLD/5-113; CrcB-like protein, Camphor Resistance (CrcB)
SCOP206 39-109 -6.110 12  d1h67a1 a.40.1.1 (A:28-134) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}
VFDB 19-127 -10.000 14  VFG045604(gi:52843080) (lpg2885) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]


FFAS is supported by the NIH grant R01-GM087218-01
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Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.