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# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 COG0614 4-40 -3.190 37  [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
H.sapiens 8-22 -6.790 60  sp|Q8NEQ6|CA064_HUMAN Uncharacterized protein C1orf64 OS=Homo sapiens GN=C1orf64 PE=2 SV=1
HGM_OVER 3-25 -1.660 21  HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
NEW_HUMAN_DOMAINS 8-34 -4.390 25  sp|Q96M20|CT152_HUMAN Uncharacterized protein C20orf152 OS=Homo sapiens GN=C20orf152 PE=2 SV=2 (Range: 1-78)
PDB0614 10-39 -6.920 26  2jxc_B mol:protein length:45 Stonin-2
PfamA27U 1-30 -7.090 30  PF16605; F7G369.1/792-851; LSM-interacting associated unstructured
SCOP175 9-39 -5.200 32  d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
VFDB 1-27 -2.510 29  VFG1612 (gi:23954294) orf78 - hypothetical protein [Escherichia coli 536]
2 TM0002 TM0002 281883 Purified-2001-08-29 41 COG0614 8-35 -3.630 28  [J] COG0256 Ribosomal protein L18
H.sapiens 3-40 -4.670 22  sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 OS=Homo sapiens GN=BAT3 PE=1 SV=2 (Range: 751-1050)
HGM_OVER 1-29 -2.320 13  HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;
NEW_HUMAN_DOMAINS 6-36 -6.020 25  sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2 (Range: 1469-1518)
PDB0614 8-29 -4.530 31  2cmy_B mol:protein length:34 VERONICA HEDERIFOLIA TRYPSIN INHIBITOR
PfamA27U 3-33 -5.010 PF03004.9; Q9M9D8_ARATH/153-297; Plant transposase (Ptta/En/Spm family)
SCOP175 6-40 -4.480 25  d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]}
VFDB 7-40 -4.550 20  VFG1719 (gi:26249433) c3598 - Hypothetical protein [Escherichia coli CFT073]
3 TM0003 TM0003 281884 Purified-2001-12-06 40 COG0614 1-37 -3.960 13  [E] COG4401 Chorismate mutase
H.sapiens 10-37 -4.200 32  sp|A8MUN3|YQ048_HUMAN Putative uncharacterized protein ENSP00000381830 OS=Homo sapiens PE=5 SV=1
HGM_OVER 4-38 -2.590 17  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
NEW_HUMAN_DOMAINS 2-39 -4.870 26  sp|Q9NYP8|CU062_HUMAN Uncharacterized protein C21orf62 OS=Homo sapiens GN=C21orf62 PE=1 SV=2 (Range: 160-219)
PDB0614 6-40 -4.510 17  3igm_B mol:protein length:77 PF14_0633 protein
PfamA27U 2-28 -4.120 29  PF15692; G3UI48.1/110-184; NF-kappa-B-activating protein
SCOP175 8-36 -4.410 24  d1ufya_ d.79.1.2 (A:) Chorismate mutase {Thermus thermophilus [TaxId: 274]}
VFDB 19-35 -2.040 23  VFG2262 (gi:49476224) trwH1 - hypothetical protein [Bartonella henselae Houston-1] (VF0372)
4 TM0004 TM0004 281885 Purified-2004-07-19 31 COG0614 3-30 -2.890 21  [D] COG2917 Intracellular septation protein A
H.sapiens 2-29 -4.880 25  sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1 (Range: 451-750)
HGM_OVER 2-28 -1.500 11  PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
NEW_HUMAN_DOMAINS 2-29 -6.040 25  sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1 (Range: 622-678)
PDB0614 4-31 -4.620 10  4kg0_A mol:protein length:169 Protein neuralized
PfamA27U 7-31 -4.920 12  PF04403.8; A6SWU6_JANMA/66-227; Paraquat-inducible protein A
SCOP175 10-29 -3.390 25  d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}
VFDB 2-26 -2.610 20  VFG1128 (gi:15641798) VC1795 - transcriptional regulator, putative [Vibrio cholerae N16961]
5 TM0005 TM0005 281886 Purified-2001-01-30 650 COG0614 2-649 -133.000 23  [L] KOG1803 DNA helicase
H.sapiens 2-278 -68.500 33  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 1-300)
144-484 -81.800 27  sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2 (Range: 451-750)
339-638 -96.700 34  sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2 (Range: 601-900)
HGM_OVER 2-166 -29.600 15  HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
NEW_HUMAN_DOMAINS 551-625 -6.440 15  sp|Q8N0U4|F185A_HUMAN Protein FAM185A OS=Homo sapiens GN=FAM185A PE=2 SV=3 (Range: 68-151)
PDB0614 2-650 -141.000 34  4b3f_X mol:protein length:646 DNA-BINDING PROTEIN SMUBP-2
PfamA27U 170-419 -73.400 29  PF13086.1; B6HQI4_PENCW/1305-1589; AAA domain
424-626 -70.400 34  PF13087.1; D3ZG52_RAT/805-1017; AAA domain
SCOP175 136-448 -16.400 17  d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
171-610 -13.100 16  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
VFDB 122-644 -11.400 13  VFG1104 (gi:15641774) VC1771 - hypothetical protein [Vibrio cholerae N16961]
171-642 -51.600 19  VFG1537 (gi:23954221) orf2 - hypothetical protein [Escherichia coli 536]
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 COG0614 2-345 -55.600 16  [E] COG3799 Methylaspartate ammonia-lyase
H.sapiens 1-345 -44.400 17  sp|Q7L5Y1|ENOF1_HUMAN Mitochondrial enolase superfamily member 1 OS=Homo sapiens GN=ENOSF1 PE=1 SV=1
HGM_OVER 193-242 -3.710 10  PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
NEW_HUMAN_DOMAINS 46-234 -5.530 14  sp|Q6N022|TEN4_HUMAN Teneurin-4 OS=Homo sapiens GN=ODZ4 PE=2 SV=2 (Range: 2564-2769)
PDB0614 1-345 -112.000 100  2zad_A mol:protein length:345 Muconate cycloisomerase
PfamA27U 6-123 -38.000 22  PF02746.11; CLCB_PSEPU/5-125; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
138-320 -35.800 16  PF07476.6; O66145_CITAM/161-411; Methylaspartate ammonia-lyase C-terminus
SCOP175 2-124 -47.000 26  d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
126-345 -77.100 37  d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
VFDB 126-289 -4.390 14  VFG1029 (gi:15808709) tnpM - TnpM [Shigella flexneri (serotype 2a) YSH6000]
7 TM0007 TM0007 281888 Purified-2004-07-19 438 COG0614 13-434 -19.700 12  [O] KOG0909 Peptide:N-glycanase
38-380 -27.000 10  [D] KOG4575 TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis
147-397 -28.700 15  [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases
H.sapiens 111-380 -24.800 12  sp|Q8NBH2|KY_HUMAN Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=1 SV=1
269-434 -22.300 17  sp|Q96IV0|NGLY1_HUMAN Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo sapiens GN=NGLY1 PE=1 SV=1 (Range: 151-450)
HGM_OVER 1-81 -4.380 17  PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)
NEW_HUMAN_DOMAINS 4-87 -6.310 16  sp|Q8IWA6|CCD60_HUMAN Coiled-coil domain-containing protein 60 OS=Homo sapiens GN=CCDC60 PE=2 SV=2 (Range: 453-550)
PDB0614 47-364 -17.700 3kd4_A mol:protein length:506 Putative protease
143-397 -29.700 18  3isr_A mol:protein length:293 Transglutaminase-like enzymes, putative cyste
PfamA27U 257-379 -45.300 12  PF12386.3; Q7LYX0_9CAUD/142-283; Pseudomurein endo-isopeptidase Pei
316-418 -11.600 12  PF14402.1; A0KIF3_AERHH/186-501; 7 transmembrane helices usually fused to an inactive transglutaminase
SCOP175 177-367 -22.700 15  d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 4-362 -4.750 VFG1516 (gi:24528045) l0015 - L0015 protein [Escherichia coli 536]
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 COG0614 1-224 -79.600 31  [R] COG1878 Predicted metal-dependent hydrolase
H.sapiens 55-224 -7.250 sp|Q8TB52|FBX30_HUMAN F-box only protein 30 OS=Homo sapiens GN=FBXO30 PE=1 SV=3 (Range: 451-745)
HGM_OVER 19-172 -2.750 12  PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;
NEW_HUMAN_DOMAINS 130-224 -4.790 13  sp|Q5D0E6|DALD3_HUMAN DALR anticodon-binding domain-containing protein 3 OS=Homo sapiens GN=DALRD3 PE=2 SV=2 (Range: 213-359)
PDB0614 1-222 -81.000 23  4cog_A mol:protein length:215 KYNURENINE FORMAMIDASE
PfamA27U 2-157 -65.700 20  PF04199.8; A8MEU2_ALKOO/9-169; Putative cyclase
SCOP175 1-224 -77.900 27  d1r61a_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 18-218 -3.960 VFG0680 (gi:6470207) capA - CapA [Bacillus anthracis] (VF0141)
9 TM0009 TM0009 281890 Purified-2001-02-14 142 COG0614 1-141 -48.500 19  [S] COG1633 Uncharacterized conserved protein
H.sapiens 4-136 -16.600 16  sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 homolog OS=Homo sapiens GN=COQ7 PE=1 SV=3
HGM_OVER 13-140 -4.660 PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
NEW_HUMAN_DOMAINS 107-142 -5.540 16  sp|Q6ZSZ6|TSH1_HUMAN Teashirt homolog 1 OS=Homo sapiens GN=TSHZ1 PE=2 SV=2 (Range: 896-968)
PDB0614 1-141 -56.500 31  1vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate pro
PfamA27U 5-141 -41.200 15  PF09968.4; A6LNR3_THEM4/28-188; Uncharacterized protein domain (DUF2202 topsan)
SCOP175 2-141 -56.000 32  d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
VFDB 4-142 -6.140 10  VFG1567 (gi:23954251) orf33 - hypothetical protein [Escherichia coli 536]
10 TM0010 TM0010 281891 Purified-2005-03-03 607 COG0614 2-98 -18.100 29  [C] COG3411 Ferredoxin
46-537 -120.000 34  [C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit
123-589 -20.400 20  [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
H.sapiens 78-539 -113.000 35  sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4
511-597 -14.200 27  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
HGM_OVER 489-606 -3.560 15  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 430-588 -7.740 10  sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3 (Range: 4233-4375)
PDB0614 3-103 -29.300 30  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
103-536 -113.000 45  2fug_1 mol:protein length:438 NADH-quinone oxidoreductase chain 1
540-598 -21.100 25  2vkr_A mol:protein length:103 ZINC-CONTAINING FERREDOXIN
PfamA27U 158-328 -19.100 28  PF01512.12; A1U014_MARAV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit
434-588 -9.560 12  PF00757.15; INSR_XENLA/189-350; Furin-like cysteine rich region
439-484 -25.900 65  PF10589.4; A7ALS7_9PORP/404-449; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
513-592 -9.740 20  PF13247.1; Q9L353_9BACL/159-257; 4Fe-4S dicluster domain
543-594 -15.900 35  PF14697.1; E4PIH9_MARAH/57-111; 4Fe-4S dicluster domain
SCOP175 6-96 -28.000 33  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
109-349 -89.100 49  d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
351-434 -38.000 44  d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
435-536 -47.000 42  d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
512-598 -42.400 31  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
VFDB 432-592 -8.150 21  VFG0486 (gi:16764735) ttrB - Tetrathionate reductase complex, subunit B [Salmonella enterica (serovar typhimurium) LT2]
11 TM0011 TM0011 281892 Purified-2004-02-02 128 COG0614 2-127 -37.300 23  [C] COG3411 Ferredoxin
H.sapiens 1-119 -13.500 14  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 3-121 -4.280 15  PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;
NEW_HUMAN_DOMAINS 31-123 -8.210 12  sp|Q2QL34|MP17L_HUMAN Mpv17-like protein OS=Homo sapiens GN=MPV17L PE=1 SV=1 (Range: 1-104)
PDB0614 30-128 -36.000 28  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
PfamA27U 1-122 -16.100 13  PF06999.7; Q8YTX4_NOSS1/16-223; Sucrase/ferredoxin-like
SCOP175 1-119 -13.900 16  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
40-125 -35.500 29  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
VFDB 3-76 -5.990 16  VFG1427 (gi:145697) daaE - fimbrial subunit F1845 [Escherichia coli C1845] (VF0212)
12 TM0012 TM0012 281893 Purified-2001-08-29 176 COG0614 6-172 -73.300 28  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
H.sapiens 1-174 -58.000 30  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 27-175 -7.900 11  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
NEW_HUMAN_DOMAINS 18-91 -7.620 18  sp|Q49AR2|CE022_HUMAN UPF0489 protein C5orf22 OS=Homo sapiens GN=C5orf22 PE=1 SV=2 (Range: 258-442)
PDB0614 16-174 -63.300 27  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
PfamA27U 26-173 -56.100 33  PF01257.14; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
SCOP175 19-174 -63.400 28  d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
VFDB 23-143 -8.380 14  VFG0478 (gi:16764063) fur - transcriptional repressor of iron-responsive genes (Fur family) (ferric uptake regulator) [Salmonella enterica (serovar typhimurium) LT2] (VF0113)
13 TM0013 TM0013 281894 Purified-2001-08-24 253 COG0614 18-252 -62.600 16  [C] COG0426 Uncharacterized flavoproteins
H.sapiens 29-253 -23.900 16  sp|Q68D91|MBLC2_HUMAN Metallo-beta-lactamase domain-containing protein 2 OS=Homo sapiens GN=MBLAC2 PE=1 SV=3
HGM_OVER 53-110 -3.380 13  PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
NEW_HUMAN_DOMAINS 34-167 -5.370 15  sp|Q8N201|INT1_HUMAN Integrator complex subunit 1 OS=Homo sapiens GN=INTS1 PE=1 SV=2 (Range: 113-266)
PDB0614 1-241 -72.200 15  4fek_A mol:protein length:262 Putative diflavin flavoprotein A 5
PfamA27U 5-240 -23.900 12  PF14597.1; Q3M8K9_ANAVT/1-199; Metallo-beta-lactamase superfamily
SCOP175 12-238 -75.600 19  d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
VFDB 31-227 -6.000 VFG0572 (gi:16767045) slsA - putative inner membrane protein [Salmonella enterica (serovar typhimurium) LT2]
14 TM0014 TM0014 281895 Purified-2001-01-30 278 COG0614 4-277 -41.600 22  [NT] COG0840 Methyl-accepting chemotaxis protein
H.sapiens 7-273 -22.300 sp|Q9Y4G6|TLN2_HUMAN Talin-2 OS=Homo sapiens GN=TLN2 PE=1 SV=4 (Range: 1801-2100)
HGM_OVER 85-232 -5.320 PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
NEW_HUMAN_DOMAINS 55-274 -8.130 10  sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1 (Range: 234-801)
PDB0614 4-277 -53.300 19  2ch7_A mol:protein length:309 METHYL-ACCEPTING CHEMOTAXIS PROTEIN
41-253 -64.500 100  3g67_A mol:protein length:213 Methyl-accepting chemotaxis protein
PfamA27U 1-274 -10.500 PF05478.6; Q7Q6R9_ANOGA/26-846; Prominin
31-277 -49.600 12  PF03532.8; O50963_BORBU/3-255; OMS28 porin
SCOP175 39-189 -8.470 12  d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
VFDB 4-277 -41.600 22  VFG1228 (gi:15595608) pilJ - twitching motility protein PilJ [Pseudomonas aeruginosa PAO1] (VF0082)
15 TM0015 TM0015 281896 PDB-2007-09-14 192 COG0614 7-192 -29.500 21  [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
H.sapiens 24-167 -7.200 12  sp|O43909|EXTL3_HUMAN Exostosin-like 3 OS=Homo sapiens GN=EXTL3 PE=1 SV=1 (Range: 751-919)
HGM_OVER 25-178 -3.690 PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;
NEW_HUMAN_DOMAINS 16-75 -5.770 11  sp|Q93073|SBP2L_HUMAN Selenocysteine insertion sequence-binding protein 2-like OS=Homo sapiens GN=SECISBP2L PE=2 SV=3 (Range: 1-149)
PDB0614 1-192 -106.000 100  2raa_A mol:protein length:204 Pyruvate synthase subunit porC
PfamA27U 16-186 -52.900 20  PF01558.13; Q31EX2_THICR/20-185; Pyruvate ferredoxin/flavodoxin oxidoreductase
SCOP175 6-192 -31.900 18  d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
VFDB 5-164 -6.440 13  VFG0682 (gi:6470209) capB - CapB [Bacillus anthracis] (VF0141)
16 TM0016 TM0016 281897 Purified-2001-08-24 101 COG0614 2-95 -50.600 41  [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit
H.sapiens 28-100 -24.800 34  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
HGM_OVER 39-91 -4.370 18  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
NEW_HUMAN_DOMAINS 37-92 -9.260 17  sp|Q53GD3|CTL4_HUMAN Choline transporter-like protein 4 OS=Homo sapiens GN=SLC44A4 PE=2 SV=2 (Range: 103-227)
PDB0614 4-100 -20.900 24  1b0p_A mol:protein length:1231 PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
35-93 -28.600 27  2vkr_A mol:protein length:103 ZINC-CONTAINING FERREDOXIN
PfamA27U 36-90 -24.600 33  PF14697.1; E4PIH9_MARAH/57-111; 4Fe-4S dicluster domain
SCOP175 1-87 -14.500 23  d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}
33-100 -28.400 32  d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
VFDB 9-99 -18.400 20  VFG0486 (gi:16764735) ttrB - Tetrathionate reductase complex, subunit B [Salmonella enterica (serovar typhimurium) LT2]
17 TM0017 TM0017 281898 Purified-2003-03-05 394 COG0614 6-394 -88.500 31  [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
H.sapiens 5-365 -8.810 15  sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3
HGM_OVER 240-363 -2.820 10  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
NEW_HUMAN_DOMAINS 12-48 -5.720 27  sp|Q68CZ2|TENS3_HUMAN Tensin-3 OS=Homo sapiens GN=TNS3 PE=1 SV=2 (Range: 774-862)
PDB0614 7-394 -70.600 29  1b0p_A mol:protein length:1231 PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
PfamA27U 20-193 -31.600 32  PF01855.14; KORA_ARCFU/14-229; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
265-365 -12.600 17  PF02780.15; O16144_ASCSU/223-346; Transketolase, C-terminal domain
SCOP175 7-256 -75.000 29  d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
257-394 -44.600 29  d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
VFDB 41-325 -5.060 VFG1109 (gi:15641779) nanA - N-acetylneuraminate lyase, putative [Vibrio cholerae N16961]
18 TM0018 TM0018 281899 Purified-2001-08-24 324 COG0614 26-230 -33.800 21  [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
H.sapiens 35-226 -7.270 sp|A1L0T0|ILVBL_HUMAN(removed signalp:1-28) Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2 (Range: 301-600)
HGM_OVER 49-241 -4.460 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 26-142 -5.420 14  sp|Q96JH7|VCIP1_HUMAN Deubiquitinating protein VCIP135 OS=Homo sapiens GN=VCPIP1 PE=1 SV=2 (Range: 42-180)
PDB0614 5-322 -52.900 26  1b0p_A mol:protein length:1231 PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
PfamA27U 76-226 -9.090 15  PF13292.1; Q1N245_9GAMM/15-286; 1-deoxy-D-xylulose-5-phosphate synthase
SCOP175 5-322 -62.800 26  d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
VFDB 11-307 -5.880 14  VFG1591 (gi:23954274) orf57 - hypothetical protein [Escherichia coli 536]
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 COG0614 1-250 -93.400 34  [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
H.sapiens 4-252 -88.600 32  sp|Q8N4T8|CBR4_HUMAN Carbonyl reductase family member 4 OS=Homo sapiens GN=CBR4 PE=1 SV=3
HGM_OVER 5-104 -2.820 17  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
NEW_HUMAN_DOMAINS 133-185 -5.240 18  tr|F5H0X0|F5H0X0_HUMAN Uncharacterized protein OS=Homo sapiens GN=CACNA1C PE=4 SV=1 (Range: 1-100)
PDB0614 2-250 -98.900 31  4gh5_A mol:protein length:269 Short-chain dehydrogenase/reductase SDR
PfamA27U 3-211 -38.200 13  PF08643.5; A3LXU8_PICST/127-422; Fungal family of unknown function (DUF1776 topsan)
14-249 -34.400 13  PF13561.1; A1ZQI0_9BACT/15-256; Enoyl-(Acyl carrier protein) reductase
SCOP175 1-252 -95.000 40  d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}
VFDB 2-250 -85.300 28  VFG0934 (gi:26246575) entA - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Escherichia coli CFT073] (VF0228)
20 TM0020 TM0020 281901 Purified-2001-08-24 127 COG0614 4-127 -63.800 29  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
H.sapiens 27-116 -10.200 14  sp|Q9HBR0|S38AA_HUMAN Putative sodium-coupled neutral amino acid transporter 10 OS=Homo sapiens GN=SLC38A10 PE=1 SV=2 (Range: 301-600)
HGM_OVER 37-95 -7.060 11  PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
NEW_HUMAN_DOMAINS 19-119 -6.700 sp|Q9GZU1|MCLN1_HUMAN Mucolipin-1 OS=Homo sapiens GN=MCOLN1 PE=1 SV=1 (Range: 43-298)
PDB0614 8-126 -7.780 12  4j05_A mol:protein length:530 Phosphate transporter
PfamA27U 6-121 -60.400 31  PF02537.10; A5FV99_ACICJ/73-188; CrcB-like protein
SCOP175 7-108 -6.080 d1r45a_ d.166.1.1 (A:) Exoenzyme c3 {Clostridium botulinum C bacteriophage [TaxId: 12336]}
VFDB 1-118 -6.330 12  VFG1395 (gi:15608948) mgtC - mgtC [Mycobacterium tuberculosis H37Rv] (VF0289)


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.