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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 13463< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 PF00021.16; UPAR_RAT/216-295; u-PAR/Ly-6 domain 80 SCOP175 1-80 -35.600 33  d2fd6u3 g.7.1.3 (U:92-188) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]}
22 PF00022.14; ARP6_ASPFU/19-465; Actin 447 SCOP175 6-156 -61.900 23  d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
176-443 -83.200 33  d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
23 PF00023.25; GLP1_CAEEL/1107-1139; Ankyrin repeat 33 SCOP175 1-33 -17.200 30  d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
24 PF00024.21; FA11_HUMAN/110-193; PAN domain 84 SCOP175 5-84 -26.100 33  d1hkya_ g.10.1.3 (A:) Pan module from microneme protein 5 (MIC-5) {Eimeria tenella [TaxId: 5802]}
25 PF00025.16; TRI23_RAT/390-564; ADP-ribosylation factor family 175 SCOP175 15-175 -93.700 63  d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}
26 PF00026.18; PEPA_CHICK/58-366; Eukaryotic aspartyl protease 309 SCOP175 1-308 -118.000 38  d1dpja_ b.50.1.2 (A:) Acid protease {Baker`s yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}
27 PF00027.24; Q695H0_CHLRE/446-538; Cyclic nucleotide-binding domain 93 SCOP175 1-93 -48.900 18  d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}
28 PF00028.12; FAT_DROME/499-590; Cadherin domain 92 SCOP175 1-92 -50.700 22  d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
29 PF00029.14; Q7ZYG3_XENLA/2-108; Connexin 107 SCOP175 44-64 -7.230 28  d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]}
30 PF00030.14; CRG11_RANCA/92-173; Beta/Gamma crystallin 82 SCOP175 1-82 -53.400 58  d1h4ax2 b.11.1.1 (X:87-174) gamma-Crystallin {Human (Homo sapiens), isoform D [TaxId: 9606]}
31 PF00031.16; CYTS_RAT/32-127; Cystatin domain 96 SCOP175 1-96 -57.000 38  d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]}
32 PF00032.12; A5CY15_VESOH/277-383; Cytochrome b(C-terminal)/b6/petD 107 SCOP175 4-107 -70.800 35  d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
33 PF00033.14; Q6MN52_BDEBA/7-210; Cytochrome b(N-terminal)/b6/petB 204 SCOP175 2-204 -52.100 10  d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
34 PF00034.16; Q2IUP4_RHOP2/578-669; Cytochrome c 92 SCOP175 2-92 -40.000 20  d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]}
35 PF00035.20; DGCR8_HUMAN/512-576; Double-stranded RNA binding motif 65 SCOP175 2-65 -46.700 32  d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
36 PF00036.27; CALML_DICDI/10-38; EF hand 29 SCOP175 2-29 -19.300 46  d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
37 PF00038.16; K1C14_HUMAN/114-425; Intermediate filament protein 312 SCOP175 172-282 -7.500 14  d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
38 PF00039.13; FINC_BOVIN/53-88; Fibronectin type I domain 36 SCOP175 1-36 -27.200 97  d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
39 PF00040.14; Q70GG6_HORSE/104-145; Fibronectin type II domain 42 SCOP175 1-42 -30.600 45  d1l6ja3 g.14.1.2 (A:216-274) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
40 PF00041.16; KALM_CHICK/544-641; Fibronectin type III domain 98 SCOP175 1-98 -49.300 13  d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.