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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 COG1214 1-340 -114.000 41  [L] COG4584 Transposase and inactivated derivatives
H.sapiens 1-235 -19.400 10  sp|Q9WJR5|POK3_HUMAN HERV-K_19q12 provirus ancestral Pol protein OS=Homo sapiens GN=ERVK6 PE=2 SV=2 (Range: 451-750)
81-244 -20.900 15  sp|P63132|POK5_HUMAN HERV-K_19p13.11 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1 (Range: 601-900)
81-298 -20.900 13  sp|P63133|POK6_HUMAN HERV-K_8p23.1 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1 (Range: 601-900)
HGM_OVER 206-281 -3.460 13  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
JCSG1214 13-127 -18.100 17  SP18059A ZP_02431199.1 410310 Selected-2009-11-12
14-326 -10.200 GD14004A RER070207002105 388710 Selected-2007-09-21
NEW_HUMAN_DOMAINS 4-85 -6.550 15  sp|Q9BWC9|CC106_HUMAN Coiled-coil domain-containing protein 106 OS=Homo sapiens GN=CCDC106 PE=1 SV=1 (Range: 181-280)
PDB1214 3-339 -19.300 12  4fcy_A mol:protein length:529 Transposase
70-244 -21.100 15  4fw2_A mol:protein length:270 Integrase
119-244 -22.400 17  1asu_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE
120-299 -21.700 14  4fw1_A mol:protein length:222 Integrase
PfamA27U 1-111 -13.600 PF01710.11; P74627_SYNY3/1-120; Transposase
111-295 -12.700 PF02914.10; TRA_HAEIN/267-485; Bacteriophage Mu transposase
120-244 -17.500 17  PF00665.21; O89811_FLV/1485-1601; Integrase core domain
SCOP175 2-42 -13.500 14  d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
13-97 -11.100 14  d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
120-244 -21.900 17  d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
125-292 -15.600 15  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
VFDB 1-340 -124.000 99  VFG1626 (gi:14594862) y1094 - IS100 transposase; transposase ORFA [Escherichia coli 536]
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 COG1214 49-250 -29.200 19  [L] COG1484 DNA replication protein
H.sapiens 1-209 -11.700 10  sp|Q9UFH2|DYH17_HUMAN Dynein heavy chain 17, axonemal OS=Homo sapiens GN=DNAH17 PE=2 SV=2 (Range: 2251-2550)
33-241 -14.600 12  sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1 (Range: 1951-2250)
HGM_OVER 145-259 -4.900 11  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
JCSG1214 1-243 -11.100 14  MJ8919A YP_351948.1 403413 Purified-2009-09-04
48-243 -30.700 19  NT12373A YP_804196.1 378766 Purified-2007-10-16
NEW_HUMAN_DOMAINS 87-203 -5.830 14  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB1214 14-234 -14.800 15  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
72-243 -37.300 23  3ecc_A mol:protein length:185 DNA replication protein DnaC
PfamA27U 56-235 -88.700 32  PF01695.12; Y4IQ_RHISN/60-238; IstB-like ATP binding protein
SCOP175 105-231 -18.700 25  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
VFDB 1-259 -119.000 100  VFG1515 (gi:24528044) s0036 - ORF B protein [Escherichia coli 536]
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 COG1214 6-123 -10.500 [S] COG5465 Uncharacterized conserved protein
H.sapiens 4-130 -6.030 10  sp|P04114|APOB_HUMAN(removed signalp:1-27) Apolipoprotein B-100 OS=Homo sapiens GN=APOB PE=1 SV=2 (Range: 751-1050)
HGM_OVER 1-115 -5.500 PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
JCSG1214 1-130 -40.200 10  FR15113A YP_009166.1 391933 Crystal|NMR-2009-04-30
NEW_HUMAN_DOMAINS 6-65 -6.150 10  sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=MYOF PE=1 SV=1 (Range: 1675-1754)
PDB1214 1-130 -61.800 98  1n5b_A mol:protein length:132 YOPE regulator
PfamA27U 6-118 -39.100 15  PF05932.8; Q2SNL0_HAHCH/10-127; Tir chaperone protein (CesT) family
SCOP175 2-118 -57.100 100  d1jyaa_ d.198.1.1 (A:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
VFDB 1-130 -64.100 100  VFG0372 (gi:16082696) sycE/yerA - putative yopE chaperone [Yersinia pestis CO92] (VF0140)
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 COG1214 126-217 -6.390 [S] COG4718 Phage-related protein
H.sapiens 99-218 -6.550 14  sp|Q96AG4|LRC59_HUMAN Leucine-rich repeat-containing protein 59 OS=Homo sapiens GN=LRRC59 PE=1 SV=1
HGM_OVER 114-217 -3.590 15  PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;
JCSG1214 141-217 -6.240 10  SC.B20974C YP_103213.1 428467 Selected-2013-01-04
NEW_HUMAN_DOMAINS 114-218 -5.940 10  sp|Q5DID0|UROL1_HUMAN Uromodulin-like 1 OS=Homo sapiens GN=UMODL1 PE=2 SV=2 (Range: 160-262)
PDB1214 18-85 -17.100 100  1l2w_I mol:protein length:69 Outer membrane virulence protein yopE
90-219 -70.500 100  1hy5_A mol:protein length:136 YERSINIA PESTIS VIRULENCE PROTEIN YOPE
PfamA27U 1-126 -34.200 92  PF09020.5; Q56931_YEREN/1-126; YopE, N terminal
127-195 -42.400 39  PF03545.8; A6YCJ6_AERHY/128-197; Yersinia virulence determinant (YopE)
SCOP175 22-78 -12.500 100  d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
100-219 -67.000 100  d1hy5a_ a.24.11.1 (A:) YopE {Yersinia pestis [TaxId: 632]}
VFDB 1-219 -108.000 100  VFG0373 (gi:16082697) yopE - putative outer membrane virulence protein [Yersinia pestis CO92] (VF0140)
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 COG1214 31-89 -6.570 15  [S] KOG4556 Predicted membrane protein
H.sapiens 27-81 -12.300 20  sp|Q9H5I5|PIEZ2_HUMAN(removed signalp:1-24) Protein PIEZO2 OS=Homo sapiens GN=FAM38B PE=2 SV=2 (Range: 1651-1950)
HGM_OVER 5-56 -4.300 25  HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;
JCSG1214 42-73 -7.490 25  SP18382A NP_371220.1 413717 Purified-2010-09-29
NEW_HUMAN_DOMAINS 15-80 -5.660 18  sp|Q9UKZ1|CB029_HUMAN UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1 (Range: 79-152)
PDB1214 32-95 -6.500 12  4jkv_A mol:protein length:475 Soluble cytochrome b562, Smoothened homolog
PfamA27U 29-94 -7.590 16  PF10624.4; Q2TU06_ECOLX/3-166; Plasmid conjugative transfer entry exclusion protein TraS
SCOP175 7-88 -6.310 11  d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 8-98 -6.820 15  VFG2151 (gi:15605597) CT861 - hypothetical protein [Chlamydia trachomatis D/UW-3/CX] (VF0344)
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 COG1214 2-94 -60.000 31  [R] COG3668 Plasmid stabilization system protein
H.sapiens 4-93 -6.530 sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3 (Range: 1351-1650)
HGM_OVER 2-83 -4.330 PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
JCSG1214 4-94 -6.050 11  RH10496C ZP_02078944.1 416275 Selected-2009-12-04
NEW_HUMAN_DOMAINS 6-89 -5.790 sp|Q9Y4X5|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1 SV=2 (Range: 405-557)
PDB1214 2-94 -59.900 30  3kxe_A mol:protein length:110 Toxin protein parE-1
PfamA27U 3-90 -29.300 20  PF05016.9; Q9Z4G4_9ZZZZ/4-92; Plasmid stabilisation system protein
SCOP175 3-88 -7.830 12  d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 30-83 -5.080 18  VFG2071 (gi:15595283) hcp1 - hypothetical protein [Pseudomonas aeruginosa PAO1] (VF0334)
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 COG1214 1-77 -36.000 35  [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
H.sapiens 30-77 -6.620 22  sp|Q8IYF1|ELOA2_HUMAN RNA polymerase II transcription factor SIII subunit A2 OS=Homo sapiens GN=TCEB3B PE=1 SV=2 (Range: 601-753)
HGM_OVER 30-44 -4.260 20  PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
JCSG1214 5-79 -35.800 20  PK6296A YP_425791.1 389184 Crystal|NMR-2008-06-18
NEW_HUMAN_DOMAINS 11-60 -5.830 28  sp|P80303|NUCB2_HUMAN Nucleobindin-2 OS=Homo sapiens GN=NUCB2 PE=1 SV=2 (Range: 52-167)
PDB1214 1-77 -42.100 29  3kxe_C mol:protein length:88 Antitoxin protein parD-1
PfamA27U 1-77 -44.700 35  PF03693.9; PARD_MYCBO/1-81; Uncharacterised protein family (UPF0156 topsan)
SCOP175 3-45 -16.300 32  d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 17-37 -5.130 28  VFG2353 (gi:123442789) flgM - negative regulator of flagellin synthesis [Yersinia enterocolitica 8081] (VF0394)
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 COG1214 1-156 -20.700 [L] KOG3388 Predicted transcription regulator/nuclease, contains ParB domain
61-320 -45.000 10  [K] COG1475 Predicted transcriptional regulators
H.sapiens 61-158 -21.300 sp|Q9BYN0|SRXN1_HUMAN Sulfiredoxin-1 OS=Homo sapiens GN=SRXN1 PE=1 SV=2
65-284 -12.300 12  sp|Q7Z6R9|AP2D_HUMAN Transcription factor AP-2-delta OS=Homo sapiens GN=TFAP2D PE=2 SV=1
HGM_OVER 140-211 -5.120 13  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
JCSG1214 94-248 -10.300 11  RH20443A ZP_02090406.1 415370 Selected-2009-12-04
107-215 -11.200 14  RH14964A NP_842531.1 416114 Selected-2009-12-04
NEW_HUMAN_DOMAINS 72-190 -3.570 13  sp|O60303|K0556_HUMAN Uncharacterized protein KIAA0556 OS=Homo sapiens GN=KIAA0556 PE=1 SV=4 (Range: 500-615)
PDB1214 38-158 -20.900 1yzs_A mol:protein length:121 sulfiredoxin
72-257 -43.800 21  1vz0_A mol:protein length:230 CHROMOSOME PARTITIONING PROTEIN PARB
146-318 -50.400 41  3mky_B mol:protein length:189 Protein sopB
PfamA27U 72-156 -23.800 25  PF02195.13; PARB_CHLTR/12-105; ParB-like nuclease domain
157-317 -22.700 PF07506.6; Q9F5B9_AGRRH/157-326; RepB plasmid partitioning protein
SCOP175 65-219 -22.300 14  d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]}
72-159 -29.100 26  d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
159-257 -19.000 17  d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
VFDB 62-211 -33.900 13  VFG1505 (gi:24528035) z1204 - Z1204 protein [Escherichia coli 536]
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 COG1214 75-387 -25.000 16  [D] COG0455 ATPases involved in chromosome partitioning
105-374 -64.100 19  [D] COG1192 ATPases involved in chromosome partitioning
H.sapiens 43-375 -15.400 14  sp|P53384|NUBP1_HUMAN Cytosolic Fe-S cluster assembly factor NUBP1 OS=Homo sapiens GN=NUBP1 PE=1 SV=2
107-376 -17.400 12  sp|Q9Y5Y2|NUBP2_HUMAN Cytosolic Fe-S cluster assembly factor NUBP2 OS=Homo sapiens GN=NUBP2 PE=1 SV=1
HGM_OVER 232-341 -5.690 PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
JCSG1214 2-387 -94.100 26  MJ12015E NP_436589.1 403711 Purified-2009-09-18
NEW_HUMAN_DOMAINS 107-145 -6.730 20  sp|Q96MS3|GL1D1_HUMAN Glycosyltransferase 1 domain-containing protein 1 OS=Homo sapiens GN=GLT1D1 PE=2 SV=2 (Range: 1-57)
PDB1214 2-388 -77.800 20  3ez9_A mol:protein length:403 ParA
PfamA27U 107-375 -47.700 14  PF06564.7; A6TFD7_KLEP7/1-243; YhjQ protein
109-340 -59.700 21  PF01656.18; P72976_SYNY3/5-262; CobQ/CobB/MinD/ParA nucleotide binding domain
SCOP175 105-371 -49.700 16  d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
VFDB 99-387 -26.200 18  VFG1265 (gi:15596651) fleN - flagellar synthesis regulator FleN [Pseudomonas aeruginosa PAO1] (VF0273)
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 COG1214 1-65 -23.500 20  [L] COG2801 Transposase and inactivated derivatives
H.sapiens 1-54 -6.740 11  sp|Q96JH7|VCIP1_HUMAN Deubiquitinating protein VCIP135 OS=Homo sapiens GN=VCPIP1 PE=1 SV=2 (Range: 151-450)
HGM_OVER 21-58 -3.590 HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;
JCSG1214 1-64 -14.700 15  GD14004A RER070207002105 388710 Selected-2007-09-21
NEW_HUMAN_DOMAINS 4-29 -7.160 15  tr|D6RIX7|D6RIX7_HUMAN Uncharacterized protein OS=Homo sapiens GN=USP46 PE=4 SV=1 (Range: 1-56)
PDB1214 1-65 -6.290 1c6v_A mol:protein length:164 PROTEIN (SIV INTEGRASE)
PfamA27U 18-65 -23.500 25  PF13333.1; B4RL83_NEIG2/23-78; Integrase core domain
SCOP175 1-45 -6.770 20  d1tocr1 g.8.1.2 (R:1A-56) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
VFDB 5-65 -47.500 47  VFG1555 (gi:23954239) orf20 - hypothetical protein [Escherichia coli 536]
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 COG1214 1-152 -46.000 15  [L] COG2801 Transposase and inactivated derivatives
H.sapiens 104-149 -9.710 19  sp|P63136|POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1 (Range: 451-750)
HGM_OVER 4-138 -4.210 14  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
JCSG1214 1-152 -30.700 11  GD14004A RER070207002105 388710 Selected-2007-09-21
NEW_HUMAN_DOMAINS 92-152 -6.720 16  sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3 (Range: 358-638)
PDB1214 1-152 -18.300 11  4fcy_A mol:protein length:529 Transposase
PfamA27U 23-78 -18.700 21  PF13276.1; Q1WUI0_LACS1/209-271; HTH-like domain
99-152 -13.100 11  PF02914.10; TRA_HAEIN/267-485; Bacteriophage Mu transposase
SCOP175 103-152 -13.200 14  d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain {Bacteriophage mu [TaxId: 10677]}
VFDB 1-152 -78.800 37  VFG1122 (gi:15641792) VC1789 - transposase OrfAB, subunit B [Vibrio cholerae N16961]
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 COG1214 7-107 -52.100 28  [L] COG2963 Transposase and inactivated derivatives
H.sapiens 1-101 -14.300 15  sp|Q6B0B8|TIGD3_HUMAN Tigger transposable element-derived protein 3 OS=Homo sapiens GN=TIGD3 PE=1 SV=1
HGM_OVER 20-97 -5.210 PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;
JCSG1214 11-107 -19.600 16  SP17613A YP_975059.1 412345 Purified-2010-09-29
NEW_HUMAN_DOMAINS 10-93 -6.260 14  sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2 (Range: 154-234)
PDB1214 8-96 -41.600 18  2jn6_A mol:protein length:97 Protein Cgl2762
PfamA27U 8-93 -30.500 22  PF01527.15; O50654_BURGL/7-89; Transposase
SCOP175 8-95 -43.300 18  d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
VFDB 3-107 -64.000 68  VFG1521 (gi:24528050) ORF70 - putative transposase [Escherichia coli 536]
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 COG1214 98-152 -6.260 27  [S] KOG4542 Predicted membrane protein
H.sapiens 22-182 -9.620 27  sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1 (Range: 1351-1650)
HGM_OVER 11-63 -3.920 17  PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;
JCSG1214 45-130 -7.650 19  SC.B20974D YP_110283.1 428517 Selected-2013-01-04
NEW_HUMAN_DOMAINS 9-111 -7.250 15  tr|B5MCI2|B5MCI2_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1 (Range: 1-116)
PDB1214 15-181 -6.730 13  4ubq_A mol:protein length:229 Beta-lactamase
PfamA27U 7-131 -7.640 17  PF14781.1; C3XU54_BRAFL/19-159; Ciliary BBSome complex subunit 2, N-terminal
SCOP175 51-169 -7.710 15  d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
VFDB 1-182 -148.000 100  VFG0374 (gi:16082708) yopK/yopQ - putative virulence determinant protein [Yersinia pestis CO92] (VF0140)
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 COG1214 75-290 -9.640 10  [R] COG3271 Predicted double-glycine peptidase
H.sapiens 1-296 -7.540 sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=3 (Range: 301-600)
HGM_OVER 236-322 -4.220 PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
JCSG1214 1-290 -12.000 10  SP18431A ZP_02993239.1 410515 Purified-2010-11-20
NEW_HUMAN_DOMAINS 258-321 -8.210 17  sp|Q8IY82|CC135_HUMAN Coiled-coil domain-containing protein 135 OS=Homo sapiens GN=CCDC135 PE=2 SV=3 (Range: 295-377)
PDB1214 128-322 -44.000 13  1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
PfamA27U 103-320 -81.600 100  PF03543.9; YOPT_YERPE/103-320; Yersinia/Haemophilus virulence surface antigen
SCOP175 128-322 -44.000 13  d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 1-322 -131.000 100  VFG0375 (gi:16082709) yopT - putative cytotoxic effector protein [Yersinia pestis CO92] (VF0140)
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 COG1214 6-129 -5.560 13  [S] COG3128 Uncharacterized iron-regulated protein
H.sapiens 81-125 -6.570 11  sp|Q8IXQ3|CI040_HUMAN Uncharacterized protein C9orf40 OS=Homo sapiens GN=C9orf40 PE=1 SV=1
HGM_OVER 2-125 -2.850 HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;
JCSG1214 1-132 -24.400 12  FR15113A YP_009166.1 391933 Crystal|NMR-2009-04-30
NEW_HUMAN_DOMAINS 3-88 -5.840 13  sp|Q9ULM3|YETS2_HUMAN YEATS domain-containing protein 2 OS=Homo sapiens GN=YEATS2 PE=1 SV=2 (Range: 1141-1232)
PDB1214 1-132 -64.600 98  2bho_A mol:protein length:130 CHAPERONE PROTEIN SYCT
PfamA27U 7-114 -23.100 17  PF05932.8; Q2SNL0_HAHCH/10-127; Tir chaperone protein (CesT) family
SCOP175 4-114 -39.600 18  d1ttwa_ d.198.1.1 (A:) Putative YopH chaperone SycH {Yersinia pestis [TaxId: 632]}
VFDB 1-132 -77.100 100  VFG0376 (gi:16082710) sycT - putative yopT chaperone [Yersinia pestis CO92] (VF0140)
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 COG1214 9-129 -6.130 [K] KOG4134 DNA-dependent RNA polymerase I
H.sapiens 8-47 -7.310 10  sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1 (Range: 601-900)
HGM_OVER 1-50 -4.390 12  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
JCSG1214 2-48 -6.300 19  SP19383A RER070207002069 411147 Purified-2010-09-29
NEW_HUMAN_DOMAINS 100-124 -6.080 24  sp|Q9Y6X2|PIAS3_HUMAN E3 SUMO-protein ligase PIAS3 OS=Homo sapiens GN=PIAS3 PE=1 SV=2 (Range: 500-572)
PDB1214 26-117 -5.930 4ce4_Y mol:protein length:216 MRPL24
PfamA27U 6-53 -5.910 12  PF09507.5; A1C802_ASPCL/19-433; DNA polymerase subunit Cdc27
SCOP175 2-49 -5.930 10  d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-116 -5.550 11  VFG1928 (gi:15792870) pflA - paralysed flagellum protein [Campylobacter jejuni NCTC 11168] (VF0114)
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 COG1214 5-90 -7.730 13  [TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1
H.sapiens 13-125 -7.940 10  sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2 (Range: 1-300)
HGM_OVER 4-75 -4.180 11  PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
JCSG1214 7-94 -8.040 15  WS.A20613B.RBMXL2 BC057796 425523 Cloned-2012-02-22
NEW_HUMAN_DOMAINS 1-80 -5.650 14  sp|Q5VU65|P210L_HUMAN Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens GN=NUP210L PE=2 SV=1 (Range: 716-825)
PDB1214 11-94 -9.450 16  2cpj_A mol:protein length:99 Non-POU domain-containing octamer-binding pro
PfamA27U 8-127 -7.380 24  PF01698.11; Q6XPU5_IDASC/1-385; Floricaula / Leafy protein
SCOP175 11-94 -8.580 16  d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 8-85 -6.130 15  VFG0032 (gi:33591345) bplG - probable sugar transferase [Bordetella pertussis Tohama I] (VF0033)
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 COG1214 3-409 -43.400 17  [Z] KOG0532 Leucine-rich repeat (LRR) protein, contains calponin homology domain
H.sapiens 4-409 -45.000 21  sp|P35858|ALS_HUMAN(removed signalp:1-27) Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1
HGM_OVER 260-381 -1.270 PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
JCSG1214 2-394 -50.300 17  SP16667C ZP_03460298.1 407555 Crystal|NMR-2011-11-13
NEW_HUMAN_DOMAINS 10-324 -5.190 11  sp|Q9NVH2|INT7_HUMAN Integrator complex subunit 7 OS=Homo sapiens GN=INTS7 PE=1 SV=1 (Range: 553-852)
PDB1214 1-409 -71.400 94  1g9u_A mol:protein length:454 OUTER PROTEIN YOPM
PfamA27U 136-263 -21.000 18  PF14580.1; RU2A_HUMAN/1-175; Leucine-rich repeat
SCOP175 20-386 -70.600 93  d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
VFDB 1-409 -81.200 100  VFG0377 (gi:16082715) yopM - putative targeted effector protein [Yersinia pestis CO92] (VF0140)
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 COG1214 24-300 -16.300 [S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain
H.sapiens 24-300 -17.800 sp|Q9Y250|LZTS1_HUMAN Leucine zipper putative tumor suppressor 1 OS=Homo sapiens GN=LZTS1 PE=1 SV=3
HGM_OVER 175-300 -10.700 PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
JCSG1214 9-301 -19.700 SP18791A YP_001271634.1 411947 Selected-2009-11-12
NEW_HUMAN_DOMAINS 173-257 -7.620 11  sp|Q96ER9|CCD51_HUMAN Coiled-coil domain-containing protein 51 OS=Homo sapiens GN=CCDC51 PE=1 SV=2 (Range: 57-180)
PDB1214 24-300 -12.000 1c1g_A mol:protein length:284 TROPOMYOSIN
100-297 -13.700 4gkw_A mol:protein length:167 Spindle assembly abnormal protein 6
159-297 -19.200 2ysu_B mol:protein length:135 Colicin-E2
PfamA27U 1-306 -54.800 39  PF05844.7; Q5XL01_AERHY/1-296; YopD protein
SCOP175 165-297 -13.200 d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
VFDB 1-306 -87.900 100  VFG0378 (gi:16082716) yopD - putative Yop negative regulation/targeting component [Yersinia pestis CO92] (VF0140)
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 COG1214 1-401 -90.300 100  [S] COG5613 Uncharacterized conserved protein
H.sapiens 109-383 -10.400 sp|Q9BWW8|APOL6_HUMAN Apolipoprotein L6 OS=Homo sapiens GN=APOL6 PE=2 SV=1
120-364 -11.100 11  sp|Q9BPW4|APOL4_HUMAN(removed signalp:1-21) Apolipoprotein L4 OS=Homo sapiens GN=APOL4 PE=2 SV=3
HGM_OVER 115-208 -7.140 HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
JCSG1214 65-400 -8.580 CC20746A NP_420296.1 423187 Purified-2011-04-15
NEW_HUMAN_DOMAINS 98-186 -7.050 11  sp|Q6P996|PDXD1_HUMAN Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Homo sapiens GN=PDXDC1 PE=1 SV=2 (Range: 485-677)
PDB1214 112-159 -6.850 16  4i4t_E mol:protein length:143 Stathmin-4
PfamA27U 106-397 -62.900 48  PF04888.7; Q699Q8_AERHY/103-387; Secretion system effector C (SseC) like family
SCOP175 112-159 -6.820 16  d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 1-401 -90.300 100  VFG0379 (gi:16082717) yopB - putative Yop targeting protein [Yersinia pestis CO92] (VF0140)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.