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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 COG0614 1-340 -113.000 41  [L] COG4584 Transposase and inactivated derivatives
H.sapiens 1-238 -20.500 10  sp|Q9UQG0|POK20_HUMAN HERV-K_3q27.3 provirus ancestral Pol protein OS=Homo sapiens PE=2 SV=2 (Range: 451-750)
81-244 -21.900 15  sp|P63132|POK5_HUMAN HERV-K_19p13.11 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1 (Range: 601-900)
81-299 -20.100 12  sp|Q9QC07|POK7_HUMAN HERV-K_1q23.3 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=2 (Range: 601-812)
HGM_OVER 206-281 -3.510 13  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
NEW_HUMAN_DOMAINS 4-85 -6.830 15  sp|Q9BWC9|CC106_HUMAN Coiled-coil domain-containing protein 106 OS=Homo sapiens GN=CCDC106 PE=1 SV=1 (Range: 181-280)
PDB0614 2-130 -18.200 1u78_A mol:protein length:141 transposable element tc3 transposase
3-339 -16.300 13  4fcy_A mol:protein length:529 Transposase
70-299 -21.300 13  4fw2_A mol:protein length:270 Integrase
120-244 -22.500 16  1cz9_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE
120-299 -21.600 12  4fw1_A mol:protein length:222 Integrase
PfamA27U 2-42 -13.400 26  PF11427.3; B4MU89_DROWI/3-52; Tc3 transposase
2-111 -13.100 PF01710.11; P74627_SYNY3/1-120; Transposase
120-244 -17.700 17  PF00665.21; O89811_FLV/1485-1601; Integrase core domain
215-288 -11.600 16  PF13683.1; Q7DB06_CAUCR/199-265; Integrase core domain
SCOP175 2-42 -13.600 14  d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
13-100 -10.400 14  d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
118-292 -15.600 15  d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
120-244 -21.600 17  d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
VFDB 1-340 -122.000 99  VFG1514 (gi:24528043) s0035 - ORF A protein [Escherichia coli 536]
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 COG0614 54-250 -28.100 19  [L] COG1484 DNA replication protein
H.sapiens 1-209 -12.200 10  sp|Q9UFH2|DYH17_HUMAN Dynein heavy chain 17, axonemal OS=Homo sapiens GN=DNAH17 PE=2 SV=2 (Range: 2251-2550)
33-241 -14.500 12  sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1 (Range: 1951-2250)
HGM_OVER 97-231 -4.870 11  PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;
NEW_HUMAN_DOMAINS 98-209 -5.370 13  sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens GN=TULP4 PE=2 SV=2 (Range: 647-767)
PDB0614 14-227 -14.800 15  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
72-243 -35.400 23  3ecc_A mol:protein length:185 DNA replication protein DnaC
PfamA27U 56-235 -88.400 32  PF01695.12; Y4IQ_RHISN/60-238; IstB-like ATP binding protein
SCOP175 76-204 -18.700 21  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
103-259 -12.200 16  d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
VFDB 1-259 -118.000 100  VFG1515 (gi:24528044) s0036 - ORF B protein [Escherichia coli 536]
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 COG0614 6-121 -8.920 [S] COG5465 Uncharacterized conserved protein
H.sapiens 63-130 -7.010 11  sp|O94850|DEND_HUMAN Dendrin OS=Homo sapiens GN=DDN PE=1 SV=3 (Range: 1-300)
HGM_OVER 1-115 -4.790 PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
NEW_HUMAN_DOMAINS 6-65 -6.130 10  sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=MYOF PE=1 SV=1 (Range: 1675-1754)
PDB0614 1-130 -62.000 98  1n5b_A mol:protein length:132 YOPE regulator
PfamA27U 6-118 -38.600 15  PF05932.8; Q2SNL0_HAHCH/10-127; Tir chaperone protein (CesT) family
SCOP175 2-118 -57.100 100  d1jyaa_ d.198.1.1 (A:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
VFDB 1-130 -64.400 100  VFG0372 (gi:16082696) sycE/yerA - putative yopE chaperone [Yersinia pestis CO92] (VF0140)
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 COG0614 115-219 -5.920 [S] KOG4514 Uncharacterized conserved protein
H.sapiens 100-218 -6.280 10  sp|Q9Y2L9|LRCH1_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Homo sapiens GN=LRCH1 PE=1 SV=3 (Range: 151-450)
HGM_OVER 120-217 -2.750 HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;
NEW_HUMAN_DOMAINS 127-217 -5.750 19  sp|Q71F23|CENPU_HUMAN Centromere protein U OS=Homo sapiens GN=MLF1IP PE=1 SV=1 (Range: 321-418)
PDB0614 18-85 -25.500 100  1l2w_I mol:protein length:69 Outer membrane virulence protein yopE
90-219 -69.600 100  1hy5_A mol:protein length:136 YERSINIA PESTIS VIRULENCE PROTEIN YOPE
PfamA27U 1-126 -44.900 92  PF09020.5; Q56931_YEREN/1-126; YopE, N terminal
127-195 -44.000 39  PF03545.8; A6YCJ6_AERHY/128-197; Yersinia virulence determinant (YopE)
SCOP175 22-78 -20.600 100  d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
100-219 -68.500 100  d1hy5a_ a.24.11.1 (A:) YopE {Yersinia pestis [TaxId: 632]}
VFDB 1-219 -112.000 100  VFG0373 (gi:16082697) yopE - putative outer membrane virulence protein [Yersinia pestis CO92] (VF0140)
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 COG0614 39-98 -6.350 20  [S] COG4713 Predicted membrane protein
H.sapiens 27-81 -12.000 20  sp|Q9H5I5|PIEZ2_HUMAN(removed signalp:1-24) Protein PIEZO2 OS=Homo sapiens GN=FAM38B PE=2 SV=2 (Range: 1651-1950)
HGM_OVER 5-56 -4.240 25  HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;
NEW_HUMAN_DOMAINS 24-61 -6.100 13  sp|P86478|PR20E_HUMAN Proline-rich protein 20E OS=Homo sapiens GN=PRR20E PE=4 SV=1 (Range: 134-221)
PDB0614 31-89 -6.390 10  4jkv_A mol:protein length:475 Soluble cytochrome b562, Smoothened homolog
PfamA27U 2-92 -7.630 16  PF07691.7; Q7SG54_NEUCR/435-585; PA14 domain
SCOP175 7-88 -7.250 11  d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 8-98 -6.420 15  VFG2151 (gi:15605597) CT861 - hypothetical protein [Chlamydia trachomatis D/UW-3/CX] (VF0344)
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 COG0614 2-94 -59.700 31  [R] COG3668 Plasmid stabilization system protein
H.sapiens 3-91 -7.390 10  sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3 (Range: 1351-1650)
HGM_OVER 2-83 -3.100 PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
NEW_HUMAN_DOMAINS 6-89 -5.960 sp|Q9Y4X5|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1 SV=2 (Range: 405-557)
PDB0614 2-95 -59.700 30  3kxe_A mol:protein length:110 Toxin protein parE-1
PfamA27U 3-90 -28.700 20  PF05016.9; Q9Z4G4_9ZZZZ/4-92; Plasmid stabilisation system protein
SCOP175 3-88 -7.960 12  d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 30-83 -5.390 18  VFG2071 (gi:15595283) hcp1 - hypothetical protein [Pseudomonas aeruginosa PAO1] (VF0334)
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 COG0614 1-77 -35.500 33  [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
H.sapiens 30-77 -6.870 22  sp|Q8IYF1|ELOA2_HUMAN RNA polymerase II transcription factor SIII subunit A2 OS=Homo sapiens GN=TCEB3B PE=1 SV=2 (Range: 601-753)
HGM_OVER 30-44 -4.200 20  PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
NEW_HUMAN_DOMAINS 11-60 -5.660 28  sp|P80303|NUCB2_HUMAN Nucleobindin-2 OS=Homo sapiens GN=NUCB2 PE=1 SV=2 (Range: 52-167)
PDB0614 1-77 -41.700 29  3kxe_C mol:protein length:88 Antitoxin protein parD-1
PfamA27U 1-77 -43.900 35  PF03693.9; PARD_MYCBO/1-81; Uncharacterised protein family (UPF0156 topsan)
SCOP175 3-45 -15.300 32  d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 17-37 -5.230 28  VFG2353 (gi:123442789) flgM - negative regulator of flagellin synthesis [Yersinia enterocolitica 8081] (VF0394)
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 COG0614 1-156 -19.200 [L] KOG3388 Predicted transcription regulator/nuclease, contains ParB domain
75-320 -40.200 10  [K] COG1475 Predicted transcriptional regulators
H.sapiens 22-158 -19.000 sp|Q9BYN0|SRXN1_HUMAN Sulfiredoxin-1 OS=Homo sapiens GN=SRXN1 PE=1 SV=2
HGM_OVER 140-211 -5.250 13  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
NEW_HUMAN_DOMAINS 176-311 -4.170 12  sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1 (Range: 899-1057)
PDB0614 74-275 -42.000 19  1vz0_A mol:protein length:230 CHROMOSOME PARTITIONING PROTEIN PARB
146-317 -50.800 41  3mky_B mol:protein length:189 Protein sopB
PfamA27U 76-156 -23.700 25  PF02195.13; PARB_CHLTR/12-105; ParB-like nuclease domain
157-317 -21.700 PF07506.6; Q9F5B9_AGRRH/157-326; RepB plasmid partitioning protein
SCOP175 65-276 -22.400 14  d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]}
74-159 -29.700 25  d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
VFDB 48-244 -10.000 VFG1100 (gi:15641770) VC1767 - conserved hypothetical protein [Vibrio cholerae N16961]
61-209 -26.400 13  VFG1505 (gi:24528035) z1204 - Z1204 protein [Escherichia coli 536]
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 COG0614 75-387 -23.100 16  [D] COG0455 ATPases involved in chromosome partitioning
105-374 -61.400 18  [D] COG1192 ATPases involved in chromosome partitioning
H.sapiens 107-376 -16.500 12  sp|Q9Y5Y2|NUBP2_HUMAN Cytosolic Fe-S cluster assembly factor NUBP2 OS=Homo sapiens GN=NUBP2 PE=1 SV=1
HGM_OVER 232-340 -4.290 PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
NEW_HUMAN_DOMAINS 107-145 -6.620 20  sp|Q96MS3|GL1D1_HUMAN Glycosyltransferase 1 domain-containing protein 1 OS=Homo sapiens GN=GLT1D1 PE=2 SV=2 (Range: 1-57)
PDB0614 2-388 -77.400 20  3ez9_A mol:protein length:403 ParA
PfamA27U 107-375 -45.700 15  PF06564.7; A6TFD7_KLEP7/1-243; YhjQ protein
109-340 -56.700 22  PF01656.18; P72976_SYNY3/5-262; CobQ/CobB/MinD/ParA nucleotide binding domain
SCOP175 105-371 -39.500 16  d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
VFDB 99-387 -24.200 18  VFG1265 (gi:15596651) fleN - flagellar synthesis regulator FleN [Pseudomonas aeruginosa PAO1] (VF0273)
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 COG0614 1-65 -22.100 21  [L] COG2801 Transposase and inactivated derivatives
H.sapiens 1-60 -6.730 10  sp|Q9NP73|ALG13_HUMAN UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=2 (Range: 1-300)
HGM_OVER 21-58 -3.440 HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;
NEW_HUMAN_DOMAINS 4-29 -5.620 15  tr|D6RIX7|D6RIX7_HUMAN Uncharacterized protein OS=Homo sapiens GN=USP46 PE=4 SV=1 (Range: 1-56)
PDB0614 1-65 -7.130 1c6v_A mol:protein length:164 PROTEIN (SIV INTEGRASE)
PfamA27U 18-65 -22.900 25  PF13333.1; B4RL83_NEIG2/23-78; Integrase core domain
SCOP175 1-45 -6.800 20  d1tocr1 g.8.1.2 (R:1A-56) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
VFDB 5-65 -48.100 45  VFG1555 (gi:23954239) orf20 - hypothetical protein [Escherichia coli 536]
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 COG0614 1-152 -44.400 15  [L] COG2801 Transposase and inactivated derivatives
H.sapiens 104-149 -9.610 19  sp|P63136|POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1 (Range: 451-750)
HGM_OVER 1-152 -4.140 11  PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]
NEW_HUMAN_DOMAINS 23-152 -5.920 16  sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3 (Range: 239-549)
PDB0614 1-152 -17.900 11  4fcy_A mol:protein length:529 Transposase
PfamA27U 23-78 -18.400 21  PF13276.1; Q1WUI0_LACS1/209-271; HTH-like domain
103-152 -11.700 12  PF02914.10; TRA_HAEIN/267-485; Bacteriophage Mu transposase
SCOP175 103-152 -12.300 14  d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain {Bacteriophage mu [TaxId: 10677]}
VFDB 1-152 -79.300 37  VFG1122 (gi:15641792) VC1789 - transposase OrfAB, subunit B [Vibrio cholerae N16961]
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 COG0614 7-107 -52.000 28  [L] COG2963 Transposase and inactivated derivatives
H.sapiens 1-101 -14.300 14  sp|Q6B0B8|TIGD3_HUMAN Tigger transposable element-derived protein 3 OS=Homo sapiens GN=TIGD3 PE=1 SV=1
HGM_OVER 20-97 -5.110 PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;
NEW_HUMAN_DOMAINS 10-93 -6.350 14  sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2 (Range: 154-234)
PDB0614 9-102 -40.800 22  2rn7_A mol:protein length:108 IS629 orfA
PfamA27U 8-93 -31.200 22  PF01527.15; O50654_BURGL/7-89; Transposase
SCOP175 9-102 -40.800 20  d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
VFDB 3-107 -63.700 68  VFG1521 (gi:24528050) ORF70 - putative transposase [Escherichia coli 536]
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 COG0614 98-152 -6.520 27  [S] KOG4542 Predicted membrane protein
H.sapiens 22-182 -9.490 27  sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1 (Range: 1351-1650)
HGM_OVER 6-63 -4.110 16  PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;
NEW_HUMAN_DOMAINS 9-111 -6.150 15  tr|B5MCI2|B5MCI2_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1 (Range: 1-116)
PDB0614 73-163 -6.910 22  4f8b_A mol:protein length:165 NADPH-dependent 7-cyano-7-deazaguanine reduct
PfamA27U 7-131 -7.740 17  PF14781.1; C3XU54_BRAFL/19-159; Ciliary BBSome complex subunit 2, N-terminal
SCOP175 51-169 -7.700 15  d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
VFDB 1-182 -148.000 100  VFG0374 (gi:16082708) yopK/yopQ - putative virulence determinant protein [Yersinia pestis CO92] (VF0140)
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 COG0614 75-290 -11.200 10  [R] COG3271 Predicted double-glycine peptidase
H.sapiens 2-276 -7.250 sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2 (Range: 751-1050)
HGM_OVER 169-314 -3.890 10  PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
NEW_HUMAN_DOMAINS 258-321 -7.810 18  sp|Q8IY82|CC135_HUMAN Coiled-coil domain-containing protein 135 OS=Homo sapiens GN=CCDC135 PE=2 SV=3 (Range: 295-377)
PDB0614 122-314 -48.500 14  1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
PfamA27U 103-320 -83.600 100  PF03543.9; YOPT_YERPE/103-320; Yersinia/Haemophilus virulence surface antigen
SCOP175 122-314 -48.500 14  d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 1-322 -133.000 100  VFG0375 (gi:16082709) yopT - putative cytotoxic effector protein [Yersinia pestis CO92] (VF0140)
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 COG0614 88-131 -6.040 20  [S] COG5509 Uncharacterized small protein containing a coiled-coil domain
H.sapiens 18-125 -6.960 12  sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2 (Range: 2551-2754)
HGM_OVER 9-94 -4.060 PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;
NEW_HUMAN_DOMAINS 3-88 -5.800 13  sp|Q9ULM3|YETS2_HUMAN YEATS domain-containing protein 2 OS=Homo sapiens GN=YEATS2 PE=1 SV=2 (Range: 1141-1232)
PDB0614 1-132 -68.200 98  2bho_A mol:protein length:130 CHAPERONE PROTEIN SYCT
PfamA27U 7-114 -21.900 17  PF05932.8; Q2SNL0_HAHCH/10-127; Tir chaperone protein (CesT) family
SCOP175 4-114 -39.700 18  d1ttwa_ d.198.1.1 (A:) Putative YopH chaperone SycH {Yersinia pestis [TaxId: 632]}
VFDB 1-132 -80.200 100  VFG0376 (gi:16082710) sycT - putative yopT chaperone [Yersinia pestis CO92] (VF0140)
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 COG0614 4-127 -7.370 17  [S] COG1584 Predicted membrane protein
H.sapiens 2-129 -7.890 17  sp|A6NEH6|YB028_HUMAN Transmembrane protein ENSP00000343375 OS=Homo sapiens PE=4 SV=2
HGM_OVER 93-128 -3.470 16  HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;
NEW_HUMAN_DOMAINS 95-125 -7.980 25  sp|Q9ULL1|PKHG1_HUMAN Pleckstrin homology domain-containing family G member 1 OS=Homo sapiens GN=PLEKHG1 PE=1 SV=2 (Range: 834-944)
PDB0614 22-125 -6.460 16  2lio_A mol:protein length:136 Uncharacterized protein
PfamA27U 2-129 -8.570 16  PF15444.1; G7PM50_MACFA/1-221; Transmembrane protein 247
SCOP175 8-124 -6.510 d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147 {Chromobacterium violaceum [TaxId: 536]}
VFDB 80-129 -5.700 30  VFG0764 (gi:6009401) perB/bfpV - transcriptional regulator BfpV [Escherichia coli B171] (VF0190)
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 COG0614 1-115 -7.530 [S] KOG4099 Predicted membrane protein
H.sapiens 7-119 -8.510 25  sp|Q14207|NPAT_HUMAN Protein NPAT OS=Homo sapiens GN=NPAT PE=1 SV=3 (Range: 1201-1427)
HGM_OVER 1-70 -4.250 22  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 12-111 -6.150 14  sp|A6NNL5|CO061_HUMAN Uncharacterized protein C15orf61 OS=Homo sapiens GN=C15orf61 PE=2 SV=2 (Range: 1-157)
PDB0614 11-91 -9.520 16  2cpj_A mol:protein length:99 Non-POU domain-containing octamer-binding pro
PfamA27U 8-127 -6.980 24  PF01698.11; Q6XPU5_IDASC/1-385; Floricaula / Leafy protein
SCOP175 11-91 -8.670 16  d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 2-92 -6.310 18  VFG0611 (gi:24114940) shiD - colicin V immunity protein shiD [imported] [Shigella flexneri (serotype 2a) 301]
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 COG0614 9-409 -42.100 17  [T] KOG4641 FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats
H.sapiens 1-409 -46.600 24  sp|Q9BTT6|LRRC1_HUMAN Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1
HGM_OVER 261-381 -1.640 PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
NEW_HUMAN_DOMAINS 77-126 -4.890 24  sp|P48764|SL9A3_HUMAN Sodium/hydrogen exchanger 3 OS=Homo sapiens GN=SLC9A3 PE=1 SV=2 (Range: 733-811)
PDB0614 1-409 -76.700 94  1g9u_A mol:protein length:454 OUTER PROTEIN YOPM
PfamA27U 136-263 -21.800 18  PF14580.1; RU2A_HUMAN/1-175; Leucine-rich repeat
SCOP175 13-387 -38.600 21  d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
44-386 -71.300 100  d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
VFDB 1-409 -83.000 100  VFG0377 (gi:16082715) yopM - putative targeted effector protein [Yersinia pestis CO92] (VF0140)
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 COG0614 81-306 -11.300 12  [S] COG5613 Uncharacterized conserved protein
H.sapiens 80-300 -11.400 sp|Q9Y2D8|ADIP_HUMAN Afadin- and alpha-actinin-binding protein OS=Homo sapiens GN=SSX2IP PE=1 SV=3 (Range: 1-300)
107-297 -12.100 sp|Q96LX7|CCD17_HUMAN Coiled-coil domain-containing protein 17 OS=Homo sapiens GN=CCDC17 PE=2 SV=2 (Range: 151-450)
HGM_OVER 69-125 -5.510 PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
NEW_HUMAN_DOMAINS 73-156 -6.650 14  sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo sapiens GN=USP9X PE=1 SV=3 (Range: 1282-1449)
PDB0614 93-306 -9.630 11  2qzv_A mol:protein length:873 Major vault protein
186-297 -10.700 3iox_A mol:protein length:497 AgI/II
PfamA27U 1-306 -52.800 40  PF05844.7; Q5XL01_AERHY/1-296; YopD protein
SCOP175 153-297 -7.360 d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
VFDB 1-306 -110.000 100  VFG0378 (gi:16082716) yopD - putative Yop negative regulation/targeting component [Yersinia pestis CO92] (VF0140)
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 COG0614 1-401 -92.200 100  [S] COG5613 Uncharacterized conserved protein
H.sapiens 120-364 -11.000 11  sp|Q9BPW4|APOL4_HUMAN(removed signalp:1-21) Apolipoprotein L4 OS=Homo sapiens GN=APOL4 PE=2 SV=3
HGM_OVER 106-208 -6.800 HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
NEW_HUMAN_DOMAINS 98-186 -6.730 11  sp|Q6P996|PDXD1_HUMAN Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Homo sapiens GN=PDXDC1 PE=1 SV=2 (Range: 485-677)
PDB0614 124-169 -6.790 18  2q2f_A mol:protein length:89 Selenoprotein S
PfamA27U 106-397 -66.800 50  PF04888.7; Q699Q8_AERHY/103-387; Secretion system effector C (SseC) like family
SCOP175 119-159 -6.450 17  d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 1-401 -92.200 100  VFG0379 (gi:16082717) yopB - putative Yop targeting protein [Yersinia pestis CO92] (VF0140)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab

Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.