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Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 PfamA26U 21-343 -39.800 25  PF00202.16; OAPT_PSEPU/35-390; Aminotransferase class-III
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 PfamA26U 2-135 -19.900 21  PF01118.19; Q6FYZ2_BARQU/4-119; Semialdehyde dehydrogenase, NAD binding domain
3 [P] COG0003 Oxyanion-translocating ATPase 396 PfamA26U 1-307 -67.200 22  PF02374.10; ASNA_HUMAN/37-340; Anion-transporting ATPase
296-396 -13.600 PF05455.6; O33403_NATVU/1-181; GvpH
4 [P] COG0004 Ammonia permease 470 PfamA26U 41-460 -105.000 36  PF00909.16; MEP2_YEAST/33-444; Ammonium Transporter Family
5 [F] COG0005 Purine nucleoside phosphorylase 271 PfamA26U 22-268 -64.800 22  PF01048.15; A0NYN5_9RHOB/5-245; Phosphorylase superfamily
6 [E] COG0006 Xaa-Pro aminopeptidase 356 PfamA26U 5-127 -22.000 13  PF01321.13; Y4TL_RHISN/18-162; Creatinase/Prolidase N-terminal domain
134-338 -36.500 21  PF00557.19; A6WV12_OCHA4/9-239; Metallopeptidase family M24
7 [H] COG0007 Uroporphyrinogen-III methylase 292 PfamA26U 26-238 -34.800 19  PF00590.15; A1AUS5_PELPD/5-191; Tetrapyrrole (Corrin/Porphyrin) Methylases
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 PfamA26U 27-338 -126.000 100  PF00749.16; SYQ_ECOLI/27-338; tRNA synthetases class I (E and Q), catalytic domain
340-528 -75.100 49  PF03950.13; Q6AJL3_DESPS/350-543; tRNA synthetases class I (E and Q), anti-codon binding domain
9 [J] COG0009 Putative translation factor (SUA5) 346 PfamA26U 26-203 -92.500 50  PF01300.13; A6U3K1_STAA2/35-212; Telomere recombination
205-341 -47.400 45  PF03481.8; D4CAZ1_9CLOT/228-371; Putative GTP-binding controlling metal-binding
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 PfamA26U 34-299 -106.000 40  PF00491.16; Q164F5_ROSDO/34-308; Arginase family
11 [S] COG0011 Uncharacterized conserved protein 94 PfamA26U 6-94 -38.700 23  PF01910.12; A5D404_PELTS/4-96; Domain of unknown function DUF77 topsan
12 [J] COG0012 Predicted GTPase, probable translation factor 397 PfamA26U 2-263 -17.200 22  PF02421.13; B3EMV3_CHLPB/21-209; Ferrous iron transport protein B
220-327 -45.300 84  PF08438.5; B6YV75_THEON/220-327; GTPase of unknown function C-terminal
319-395 -26.900 20  PF06071.8; Q8RDX8_FUSNN/280-363; Protein of unknown function (DUF933 topsan)
13 [J] COG0013 Alanyl-tRNA synthetase 872 PfamA26U 8-558 -137.000 42  PF01411.14; SYA_HAEIN/6-555; tRNA synthetases class II (A)
802-869 -31.100 30  PF02272.14; SYA_ZYMMO/814-885; DHHA1 domain
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 PfamA26U 2-408 -18.100 15  PF00171.17; BETB_ECOLI/15-479; Aldehyde dehydrogenase family
15 [F] COG0015 Adenylosuccinate lyase 431 PfamA26U 20-286 -25.000 23  PF00206.15; FUMC1_BRAJA/22-352; Lyase
299-419 -27.200 15  PF08328.6; A4SZU3_POLSQ/333-447; Adenylosuccinate lyase C-terminal
350-429 -33.300 46  PF10397.4; Q0C0S4_HYPNA/349-429; Adenylosuccinate lyase C-terminus
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 PfamA26U 18-89 -33.000 38  PF02912.13; SYFA_STRPN/22-94; Aminoacyl tRNA synthetase class II, N-terminal domain
92-341 -110.000 100  PF01409.15; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 PfamA26U 109-426 -111.000 52  PF00152.15; SYN_LEPIN/113-431; tRNA synthetases class II (D, K and N)
18 [J] COG0018 Arginyl-tRNA synthetase 556 PfamA26U 9-95 -37.600 33  PF03485.11; SYRC_DROME/81-171; Arginyl tRNA synthetase N terminal domain
104-448 -75.100 16  PF00750.14; SYRC_HUMAN/174-520; tRNA synthetases class I (R)
437-556 -56.800 38  PF05746.10; SYR_PYRFU/507-629; DALR anticodon binding domain
19 [E] COG0019 Diaminopimelate decarboxylase 436 PfamA26U 39-301 -50.600 21  PF02784.11; DCOR2_DROME/37-273; Pyridoxal-dependent decarboxylase, pyridoxal binding domain
304-412 -35.500 21  PF00278.17; Q5LXE4_SILPO/280-393; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 PfamA26U 21-236 -108.000 46  PF01255.14; A1BDI0_CHLPD/46-267; Putative undecaprenyl diphosphate synthase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Li Z, Li W, Godzik A. FFAS03: a server for profile--profile sequence alignments. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W284-8.