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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX] 591 COG0614 1-591 -6.250 13  [O] COG2844 UTP:GlnB (protein PII) uridylyltransferase
H.sapiens 215-339 -6.700 20  sp|A6NGS2|CS069_HUMAN Uncharacterized protein C19orf69 OS=Homo sapiens GN=C19orf69 PE=2 SV=2
HGM_OVER 122-311 -5.620 13  PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;
NEW_HUMAN_DOMAINS 451-554 -6.020 27  sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2 (Range: 1545-1626)
PDB0614 280-328 -6.150 20  3rk2_C mol:protein length:81 Synaptosomal-associated protein 25
PfamA27U 303-465 -6.130 14  PF10721.4; A5W5S5_PSEP1/4-164; Protein of unknown function (DUF2514 topsan)
SCOP175 287-467 -5.970 14  d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]}
VFDB 36-560 -5.380 VFG0085 (gi:15640839) VC0822 - inner membrane protein, putative [Vibrio cholerae N16961]
2 gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX] 90 COG0614 3-73 -46.500 24  [S] COG2155 Uncharacterized conserved protein
H.sapiens 5-89 -9.800 15  sp|O60359|CCG3_HUMAN(removed signalp:1-27) Voltage-dependent calcium channel gamma-3 subunit OS=Homo sapiens GN=CACNG3 PE=2 SV=1
HGM_OVER 1-63 -5.070 11  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
NEW_HUMAN_DOMAINS 14-56 -6.850 16  sp|Q14154|DELE_HUMAN Death ligand signal enhancer OS=Homo sapiens GN=KIAA0141 PE=1 SV=3 (Range: 66-163)
PDB0614 9-58 -9.020 24  4tkr_A mol:protein length:214 Thiamine transporter thia
PfamA27U 3-63 -36.800 21  PF04070.7; Q03RN7_LACBA/1-62; Domain of unknown function (DUF378 topsan)
SCOP175 11-53 -6.410 16  d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}
VFDB 16-64 -7.160 10  VFG0773 (gi:11527912) orf5 - unknown [Escherichia coli E2348/69]
3 gi|15604720|ref|NP_219504.1| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX] 100 COG0614 3-100 -54.800 21  [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
H.sapiens 4-98 -41.900 19  sp|O43716|GATCL_HUMAN GatC-like protein OS=Homo sapiens GN=GATC PE=1 SV=1
HGM_OVER 2-92 -3.550 14  PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;
NEW_HUMAN_DOMAINS 2-39 -5.810 10  sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1 (Range: 829-934)
PDB0614 3-100 -55.000 26  2df4_C mol:protein length:100 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfer
PfamA27U 22-95 -40.600 30  PF02686.10; A1HME6_9FIRM/19-90; Glu-tRNAGln amidotransferase C subunit
SCOP175 5-98 -53.900 27  d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
VFDB 20-100 -4.800 11  VFG1517 (gi:24528046) l0014 - L0014 protein [Escherichia coli 536]
4 gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX] 491 COG0614 1-480 -145.000 42  [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
H.sapiens 1-491 -138.000 39  sp|Q9H0R6|QRSL1_HUMAN Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Homo sapiens GN=QRSL1 PE=1 SV=2
HGM_OVER 266-395 -2.790 PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
NEW_HUMAN_DOMAINS 174-287 -5.000 tr|B4DT35|B4DT35_HUMAN Uncharacterized protein OS=Homo sapiens GN=NUP54 PE=2 SV=1 (Range: 24-130)
PDB0614 1-480 -146.000 47  3h0l_A mol:protein length:478 Glutamyl-tRNA(Gln) amidotransferase subunit A
PfamA27U 23-462 -142.000 100  PF01425.16; GATA_CHLTR/22-462; Amidase
SCOP175 1-485 -142.000 43  d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}
VFDB 86-383 -3.840 14  VFG0309 (gi:15645275) fucT - alpha (1,3)-fucosyltransferase [Helicobacter pylori 26695] (VF0057)
5 gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX] 488 COG0614 1-488 -159.000 38  [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)
H.sapiens 1-486 -146.000 31  sp|O75879|GATB_HUMAN Probable glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Homo sapiens GN=PET112L PE=1 SV=1
HGM_OVER 57-318 -2.710 PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
NEW_HUMAN_DOMAINS 126-217 -5.990 15  sp|Q96T25|ZIC5_HUMAN Zinc finger protein ZIC 5 OS=Homo sapiens GN=ZIC5 PE=1 SV=2 (Range: 1-109)
PDB0614 6-488 -165.000 41  2df4_B mol:protein length:483 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfer
PfamA27U 9-299 -130.000 46  PF02934.10; Q09CR4_STIAD/56-342; GatB/GatE catalytic domain
336-485 -66.900 35  PF02637.13; GATB_BACC1/325-472; GatB domain
SCOP175 9-304 -132.000 48  d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
305-411 -53.000 22  d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
VFDB 126-306 -4.100 VFG1344 (gi:22537325) cpsM - polysaccharide biosynthesis protein CpsM(V) [Streptococcus agalactiae 2603V/R] (VF0274)
6 gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX] 363 COG0614 22-158 -9.630 13  [S] COG4854 Predicted membrane protein
H.sapiens 21-206 -8.490 12  sp|Q01668|CAC1D_HUMAN Voltage-dependent L-type calcium channel subunit alpha-1D OS=Homo sapiens GN=CACNA1D PE=1 SV=2 (Range: 601-900)
HGM_OVER 38-155 -7.180 16  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
NEW_HUMAN_DOMAINS 58-145 -6.440 20  sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2 (Range: 4156-4254)
PDB0614 3-160 -7.870 13  4dve_A mol:protein length:198 Biotin transporter BioY
PfamA27U 3-128 -9.780 13  PF05328.7; A7TLI2_VANPO/25-161; CybS
34-150 -10.500 14  PF09946.4; Q2FSA8_METHJ/4-121; Predicted membrane protein (DUF2178 topsan)
SCOP175 35-164 -6.920 16  d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
VFDB 86-363 -8.160 12  VFG1281 (gi:21282247) sdrE - Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [Staphylococcus aureus MW2] (VF0019)
7 gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX] 189 COG0614 36-188 -8.360 13  [U] KOG2927 Membrane component of ER protein translocation complex
H.sapiens 20-189 -9.810 10  sp|Q99442|SEC62_HUMAN Translocation protein SEC62 OS=Homo sapiens GN=SEC62 PE=1 SV=1
HGM_OVER 36-124 -4.800 19  HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;
NEW_HUMAN_DOMAINS 38-72 -6.620 25  sp|Q9Y2G1|MRF_HUMAN Myelin gene regulatory factor OS=Homo sapiens GN=MRF PE=1 SV=3 (Range: 758-829)
PDB0614 35-140 -7.410 12  2ksr_A mol:protein length:164 Neuronal acetylcholine receptor subunit beta-
PfamA27U 18-170 -9.090 14  PF03839.11; Q24559_DROME/91-311; Translocation protein Sec62
SCOP175 49-140 -6.000 11  d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
VFDB 90-170 -5.790 16  VFG1836 (gi:52840693) icmM - IcmM (DotJ) [Legionella pneumophila Philadelphia 1] (VF0156)
8 gi|15604725|ref|NP_219509.1| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX] 316 COG0614 11-316 -15.300 [M] COG4571 Outer membrane protease
H.sapiens 1-131 -6.670 10  sp|Q5VU97|CAHD1_HUMAN(removed signalp:1-37) VWFA and cache domain-containing protein 1 OS=Homo sapiens GN=CACHD1 PE=1 SV=2 (Range: 1051-1237)
HGM_OVER 172-316 -7.140 PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
NEW_HUMAN_DOMAINS 195-316 -6.110 sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1 (Range: 604-726)
PDB0614 2-316 -12.700 1t16_A mol:protein length:427 Long-chain fatty acid transport protein
36-316 -21.000 2f1c_X mol:protein length:286 Outer membrane protein G
PfamA27U 1-316 -21.400 11  PF09381.5; Q1RC46_ECOUT/18-318; Outer membrane protein G (OmpG)
SCOP175 12-316 -14.900 d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}
VFDB 16-316 -16.000 VFG0240 (gi:15676939) opc - class 5 outer membrane protein [Neisseria meningitidis MC58 (serogroup B)] (VF0077)
9 gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX] 300 COG0614 4-299 -108.000 23  [L] COG1039 Ribonuclease HIII
H.sapiens 63-296 -53.100 18  sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2
HGM_OVER 34-157 -3.520 11  PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;
NEW_HUMAN_DOMAINS 118-280 -5.830 15  sp|Q9NQG7|HPS4_HUMAN Hermansky-Pudlak syndrome 4 protein OS=Homo sapiens GN=HPS4 PE=1 SV=2 (Range: 539-708)
PDB0614 3-300 -104.000 26  2d0a_A mol:protein length:310 ribonuclease HIII
PfamA27U 3-80 -29.500 18  PF11858.3; RNH3_STRTD/2-80; Domain of unknown function (DUF3378 topsan)
89-291 -90.500 26  PF01351.13; RNH3_BACSU/97-301; Ribonuclease HII
SCOP175 88-300 -64.800 21  d1ekea_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
VFDB 90-300 -6.070 VFG1919 (gi:15792635) Cj1312 - possible flagellar protein [Campylobacter jejuni NCTC 11168] (VF0114)
10 gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX] 143 COG0614 2-140 -48.900 24  [S] COG1426 Uncharacterized protein conserved in bacteria
H.sapiens 4-72 -13.900 17  sp|O60869|EDF1_HUMAN Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1
HGM_OVER 14-141 -4.590 PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]
NEW_HUMAN_DOMAINS 14-82 -6.510 13  tr|B1AKM6|B1AKM6_HUMAN Phosphatidylserine decarboxylase OS=Homo sapiens GN=PISD PE=4 SV=1 (Range: 1-130)
PDB0614 9-136 -51.500 20  3fym_A mol:protein length:130 Putative uncharacterized protein
PfamA27U 15-76 -32.000 43  PF13413.1; C4XS50_DESMR/28-89; Helix-turn-helix domain
SCOP175 1-79 -14.900 25  d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
VFDB 10-93 -14.800 15  VFG1136 (gi:15641806) VC1803 - hypothetical protein [Vibrio cholerae N16961]
11 gi|15604728|ref|NP_219512.1| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX] 455 COG0614 2-332 -68.000 18  [M] COG1560 Lauroyl/myristoyl acyltransferase
H.sapiens 125-306 -9.710 11  sp|O15120|PLCB_HUMAN(removed signalp:1-23) 1-acyl-sn-glycerol-3-phosphate acyltransferase beta OS=Homo sapiens GN=AGPAT2 PE=1 SV=1
HGM_OVER 278-454 -5.080 13  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
NEW_HUMAN_DOMAINS 381-454 -6.900 12  sp|Q9UK85|DKKL1_HUMAN Dickkopf-like protein 1 OS=Homo sapiens GN=DKKL1 PE=1 SV=1 (Range: 55-173)
PDB0614 123-309 -7.030 10  1k30_A mol:protein length:368 glycerol-3-phosphate acyltransferase
PfamA27U 5-316 -68.800 16  PF03279.8; Q9ZGU3_ECO57/41-334; Bacterial lipid A biosynthesis acyltransferase
SCOP175 123-309 -7.080 10  d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
VFDB 11-325 -78.700 19  VFG2025 (gi:15792459) htrB - putative lipid A biosynthesis lauroyl acyltransferase [Campylobacter jejuni NCTC 11168] (VF0326)
12 gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX] 418 COG0614 4-411 -51.400 10  [S] COG4856 Uncharacterized protein conserved in bacteria
H.sapiens 156-183 -6.590 sp|Q9NXH9|TRM1_HUMAN(removed signalp:1-21) N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Homo sapiens GN=TRMT1 PE=1 SV=1 (Range: 451-638)
HGM_OVER 16-182 -3.920 HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
NEW_HUMAN_DOMAINS 86-418 -5.200 sp|P04114|APOB_HUMAN Apolipoprotein B-100 OS=Homo sapiens GN=APOB PE=1 SV=2 (Range: 3659-4143)
PDB0614 37-140 -22.900 13  2l3u_A mol:protein length:98 YbbR family protein
131-230 -18.400 11  2kxy_A mol:protein length:100 Uncharacterized protein
PfamA27U 142-226 -14.800 20  PF07949.7; Q63H46_BACCZ/240-319; YbbR-like protein
SCOP175 54-180 -6.210 d1v47a1 b.122.1.3 (A:4-135) ATP sulfurylase N-terminal domain {Thermus thermophilus [TaxId: 274]}
VFDB 16-191 -6.270 VFG0183 (gi:15598300) xcpP - secretion protein XcpP [Pseudomonas aeruginosa PAO1] (VF0084)
13 gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX] 264 COG0614 5-264 -103.000 33  [S] COG1624 Uncharacterized conserved protein
H.sapiens 138-252 -7.390 sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1 (Range: 151-450)
HGM_OVER 69-241 -4.070 PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
NEW_HUMAN_DOMAINS 124-252 -7.280 sp|Q9P217|ZSWM5_HUMAN Zinc finger SWIM domain-containing protein 5 OS=Homo sapiens GN=ZSWIM5 PE=2 SV=2 (Range: 178-458)
PDB0614 42-232 -81.100 32  2fb5_A mol:protein length:205 hypothetical Membrane Spanning Protein
PfamA27U 108-231 -67.900 40  PF02457.11; Q3A5V7_PELCD/115-236; DisA bacterial checkpoint controller nucleotide-binding
SCOP175 45-232 -80.100 33  d2fb5a1 d.320.1.1 (A:5-205) Hypothetical protein BC4920 (YojJ) {Bacillus cereus [TaxId: 1396]}
VFDB 79-203 -5.940 VFG2031 (gi:13508048) P65 - conserved hypothetical protein [Mycoplasma pneumoniae M129] (VF0330)
14 gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX] 446 COG0614 1-445 -138.000 31  [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1
H.sapiens 2-153 -7.420 15  sp|Q9BSN7|TM204_HUMAN(removed signalp:1-25) Transmembrane protein 204 OS=Homo sapiens GN=TMEM204 PE=2 SV=1
HGM_OVER 383-446 -3.590 14  PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;
NEW_HUMAN_DOMAINS 32-151 -6.330 15  sp|Q92665|RT31_HUMAN 28S ribosomal protein S31, mitochondrial OS=Homo sapiens GN=MRPS31 PE=1 SV=3 (Range: 254-395)
PDB0614 66-115 -6.740 20  4ds1_A mol:protein length:97 Dynein light chain 1, cytoplasmic
PfamA27U 6-438 -140.000 37  PF01654.12; A7JZ36_VIBSE/8-437; Bacterial Cytochrome Ubiquinol Oxidase
SCOP175 66-115 -6.420 20  d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
VFDB 33-206 -5.260 12  VFG1357 (gi:15901997) cbpA - choline binding protein A [Streptococcus pneumoniae TIGR4] (VF0150)
15 gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX] 353 COG0614 5-353 -111.000 30  [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2
H.sapiens 31-113 -8.930 13  sp|O43676|NDUB3_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Homo sapiens GN=NDUFB3 PE=1 SV=3
HGM_OVER 40-115 -3.510 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
NEW_HUMAN_DOMAINS 47-75 -4.940 20  tr|D6R907|D6R907_HUMAN Uncharacterized protein OS=Homo sapiens GN=EPN3 PE=4 SV=2 (Range: 1-50)
PDB0614 1-347 -6.940 11  4mbs_A mol:protein length:414 Chimera protein of C-C chemokine receptor typ
PfamA27U 8-344 -110.000 29  PF02322.10; A3S7Y8_9RHOB/5-325; Cytochrome oxidase subunit II
SCOP175 24-99 -6.380 13  d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
VFDB 33-100 -5.710 16  VFG0136 (gi:15595962) mucC - negative regulator for alginate biosynthesis MucB [Pseudomonas aeruginosa PAO1] (VF0091)
16 gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX] 434 COG0614 1-434 -123.000 30  [T] COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH
H.sapiens 1-148 -35.900 19  sp|Q5T5J6|CA026_HUMAN Uncharacterized protein C1orf26 OS=Homo sapiens GN=C1orf26 PE=2 SV=1 (Range: 301-600)
76-338 -17.800 sp|Q5T5J6|CA026_HUMAN Uncharacterized protein C1orf26 OS=Homo sapiens GN=C1orf26 PE=2 SV=1 (Range: 451-750)
226-425 -13.100 18  sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated receptor A-interacting complex 285 kDa protein OS=Homo sapiens GN=PRIC285 PE=1 SV=6 (Range: 451-750)
HGM_OVER 252-397 -2.920 17  PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;
NEW_HUMAN_DOMAINS 278-389 -5.230 sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2 (Range: 1220-1329)
PDB0614 1-140 -35.200 19  2dok_A mol:protein length:186 Telomerase-binding protein EST1A
101-423 -10.100 13  1w36_D mol:protein length:608 EXODEOXYRIBONUCLEASE V ALPHA CHAIN
222-428 -47.500 32  3b85_A mol:protein length:208 Phosphate starvation-inducible protein
PfamA27U 5-138 -53.800 23  PF13638.1; D2R0J2_PIRSD/11-151; PIN domain
222-428 -48.300 31  PF02562.11; A0LK93_SYNFM/124-328; PhoH-like protein
SCOP175 2-142 -11.700 19  d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
101-390 -13.000 15  d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
VFDB 241-434 -8.430 13  VFG0109 (gi:15641469) zot - zona occludens toxin [Vibrio cholerae N16961] (VF0129)
17 gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX] 242 COG0614 196-239 -6.880 29  [S] COG5431 Uncharacterized metal-binding protein
H.sapiens 129-242 -9.530 21  sp|Q8TAD2|IL17D_HUMAN(removed signalp:1-15) Interleukin-17D OS=Homo sapiens GN=IL17D PE=2 SV=1
174-240 -12.000 25  sp|Q8NEG5|ZSWM2_HUMAN E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens GN=ZSWIM2 PE=1 SV=2 (Range: 1-300)
HGM_OVER 17-164 -2.840 17  PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;
NEW_HUMAN_DOMAINS 186-240 -9.130 20  sp|Q13233|M3K1_HUMAN Mitogen-activated protein kinase kinase kinase 1 OS=Homo sapiens GN=MAP3K1 PE=1 SV=4 (Range: 306-389)
PDB0614 126-237 -9.330 20  4QHU Entity 3(prereleased)
PfamA27U 129-228 -8.630 23  PF06083.6; Q8K4C5_MOUSE/99-189; Interleukin-17
SCOP175 128-228 -7.370 16  d1jpya_ g.17.1.6 (A:) Interleukin 17F, IL-17F {Human (Homo sapiens) [TaxId: 9606]}
VFDB 15-186 -5.460 16  VFG2357 (gi:123442794) flhB - flagellar biosynthetic protein FlhB [Yersinia enterocolitica 8081] (VF0394)
18 gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX] 433 COG0614 19-257 -39.000 11  [S] COG4991 Uncharacterized protein with a bacterial SH3 domain homologue
52-433 -21.500 11  [S] KOG2995 FOG: SH3 domain
H.sapiens 20-197 -38.300 12  sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3 (Range: 2401-2700)
25-291 -21.900 sp|Q5TCZ1|SPD2A_HUMAN SH3 and PX domain-containing protein 2A OS=Homo sapiens GN=SH3PXD2A PE=1 SV=1 (Range: 151-450)
51-325 -21.800 sp|A1X283|SPD2B_HUMAN SH3 and PX domain-containing protein 2B OS=Homo sapiens GN=SH3PXD2B PE=1 SV=3 (Range: 151-450)
68-433 -16.200 sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens GN=SH3RF2 PE=1 SV=3 (Range: 151-450)
HGM_OVER 41-194 -5.880 11  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
NEW_HUMAN_DOMAINS 22-104 -19.500 tr|F8WA13|F8WA13_HUMAN Uncharacterized protein OS=Homo sapiens GN=MYCBP2 PE=4 SV=1 (Range: 1-90)
PDB0614 5-426 -31.800 11  3h41_A mol:protein length:311 NLP/P60 family protein
PfamA27U 42-96 -17.500 23  PF06347.8; Q8FXS3_BRUSU/49-105; Bacterial SH3 domain
101-159 -17.300 18  PF08239.6; E9IE92_SOLIN/305-375; Bacterial SH3 domain
333-420 -10.600 PF00877.14; P74160_SYNY3/112-245; NlpC/P60 family
SCOP175 36-157 -40.100 15  d1xova1 b.34.11.4 (A:181-314) Endolysin Ply, C-terminal domain {Bacteriophage Psa [TaxId: 171618]}
110-200 -10.400 12  d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}
333-431 -10.800 11  d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
VFDB 2-300 -10.500 11  VFG0078 (gi:16804596) ami - autolysin, amidase [Listeria monocytogenes (serovar 1/2a) EGD-e] (VF0071)
38-426 -12.600 10  VFG0070 (gi:16802625) iap - P60 extracellular protein, invasion associated protein Iap [Listeria monocytogenes (serovar 1/2a) EGD-e] (VF0068)
19 gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX] 157 COG0614 26-115 -6.560 12  [H] COG0368 Cobalamin-5-phosphate synthase
H.sapiens 17-157 -10.200 sp|Q9H330|CI005_HUMAN Transmembrane protein C9orf5 OS=Homo sapiens GN=C9orf5 PE=1 SV=2 (Range: 601-900)
HGM_OVER 29-108 -5.090 11  PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF
NEW_HUMAN_DOMAINS 48-118 -6.350 13  sp|Q16549|PCSK7_HUMAN Proprotein convertase subtilisin/kexin type 7 OS=Homo sapiens GN=PCSK7 PE=1 SV=2 (Range: 621-706)
PDB0614 21-157 -7.030 1xdk_B mol:protein length:303 Retinoic acid receptor, beta
PfamA27U 15-115 -6.910 PF02654.10; COBS_METTH/7-240; Cobalamin-5-phosphate synthase
SCOP175 3-110 -6.370 15  d1xhka_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Methanococcus jannaschii [TaxId: 2190]}
VFDB 24-117 -6.470 12  VFG0578 (gi:16767508) STM4258 - putative methyl-accepting chemotaxis protein [Salmonella enterica (serovar typhimurium) LT2]
20 gi|15604737|ref|NP_219521.1| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX] (Range: 1-500) 500 COG0614 2-482 -71.800 26  [J] COG0060 Isoleucyl-tRNA synthetase
H.sapiens 2-297 -109.000 54  sp|P41252|SYIC_HUMAN Isoleucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2 (Range: 1-300)
149-442 -108.000 51  sp|P41252|SYIC_HUMAN Isoleucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2 (Range: 151-450)
298-499 -72.900 55  sp|P41252|SYIC_HUMAN Isoleucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2 (Range: 301-600)
HGM_OVER 11-128 -3.200 16  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
NEW_HUMAN_DOMAINS 3-101 -5.870 sp|Q5D0E6|DALD3_HUMAN DALR anticodon-binding domain-containing protein 3 OS=Homo sapiens GN=DALRD3 PE=2 SV=2 (Range: 1-178)
PDB0614 5-500 -117.000 42  1ile_A mol:protein length:821 ISOLEUCYL-TRNA SYNTHETASE
PfamA27U 18-465 -43.700 23  PF00133.17; SYV_YEAST/156-780; tRNA synthetases class I (I, L, M and V)
SCOP175 5-500 -70.100 46  d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
VFDB 407-468 -5.020 17  VFG0767 (gi:11527909) orf1 - unknown [Escherichia coli E2348/69]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.