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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31] 407 COG1214 2-407 -88.600 13  [S] COG3567 Uncharacterized protein conserved in bacteria
H.sapiens 326-405 -7.080 14  sp|O75190|DNJB6_HUMAN DnaJ homolog subfamily B member 6 OS=Homo sapiens GN=DNAJB6 PE=1 SV=2
HGM_OVER 234-371 -3.780 PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
JCSG1214 6-407 -82.200 16  RH10244A YP_001714331.1 415782 Selected-2009-12-04
NEW_HUMAN_DOMAINS 247-402 -5.380 10  sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2 (Range: 101-251)
PDB1214 24-404 -10.500 2jes_A mol:protein length:503 PORTAL PROTEIN
PfamA27U 10-385 -85.700 14  PF06381.6; Q11J16_MESSB/35-393; Protein of unknown function (DUF1073 topsan)
SCOP175 234-401 -5.760 d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 205-386 -4.950 13  VFG2083 (gi:15600886) vasF - hypothetical protein [Vibrio cholerae N16961] (VF0335)
2 gi|11497091|ref|NP_051163.1| hypothetical protein (BB_P02) [Borrelia burgdorferi B31] 230 COG1214 1-131 -7.540 14  [K] KOG4479 Transcription factor e(y)2
H.sapiens 95-135 -6.610 29  sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2 (Range: 751-906)
HGM_OVER 21-171 -4.860 10  PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG1214 112-168 -6.310 14  SP16594G ZP_02072128.1 409534 Purified-2010-09-29
NEW_HUMAN_DOMAINS 2-165 -5.730 14  sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5 (Range: 3132-3324)
PDB1214 108-195 -6.430 2j85_A mol:protein length:122 STIV B116
PfamA27U 1-223 -112.000 95  PF07094.6; Q9S056_BORBU/1-223; Protein of unknown function (DUF1357 topsan)
SCOP175 108-188 -6.640 d2j85a1 d.321.1.1 (A:2-116) Hypothetical protein B116 {Sulfolobus turreted icosahedral virus, STIV [TaxId: 269145]}
VFDB 64-143 -6.170 VFG1908 (gi:15791908) flaG - possible flagellar protein [Campylobacter jejuni NCTC 11168] (VF0114)
3 gi|11497092|ref|NP_051164.1| hypothetical protein (BB_P03) [Borrelia burgdorferi B31] 185 COG1214 12-158 -9.020 16  [O] KOG0417 Ubiquitin-protein ligase
H.sapiens 11-159 -9.590 13  sp|Q16763|UBE2S_HUMAN Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2
HGM_OVER 104-180 -4.550 10  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
JCSG1214 2-185 -100.000 82  PU6478A NP_051250.1 381700 Crystal|NMR-2009-03-07
NEW_HUMAN_DOMAINS 73-168 -6.120 21  sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3 (Range: 543-652)
PDB1214 1-158 -9.800 14  2c4p_A mol:protein length:165 UBIQUITIN-CONJUGATING ENZYME E2 D1
PfamA27U 1-184 -96.400 57  PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function
SCOP175 11-157 -9.730 12  d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}
VFDB 61-185 -6.930 16  VFG1432 (gi:442376) cssA - CS6 structural subunit A [Escherichia coli] (VF0213)
4 gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31] 254 COG1214 23-174 -7.270 15  [O] KOG0421 Ubiquitin-protein ligase
H.sapiens 1-174 -7.950 17  sp|O00762|UBE2C_HUMAN Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1
HGM_OVER 9-178 -5.230 PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]
JCSG1214 46-248 -87.200 36  PC02989A NP_051166.1 360700 Crystal|NMR-2006-10-11
NEW_HUMAN_DOMAINS 109-209 -7.990 14  tr|Q49A14|Q49A14_HUMAN CCDC108 protein OS=Homo sapiens GN=CCDC108 PE=2 SV=1 (Range: 1-123)
PDB1214 1-174 -7.930 16  1i7k_A mol:protein length:179 UBIQUITIN-CONJUGATING ENZYME E2 H10
PfamA27U 46-247 -87.700 36  PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function
SCOP175 114-174 -6.190 20  d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}
VFDB 16-249 -4.660 VFG2192 (gi:29376363) fsrC - Unknown [Enterococcus faecalis V583] (VF0360)
5 gi|11497094|ref|NP_051166.1| hypothetical protein (BB_P05) [Borrelia burgdorferi B31] 190 COG1214 63-161 -6.540 11  [S] COG5634 Uncharacterized conserved protein
H.sapiens 61-190 -8.080 16  sp|Q9UBL3|ASH2L_HUMAN Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo sapiens GN=ASH2L PE=1 SV=1 (Range: 451-628)
HGM_OVER 1-148 -5.360 PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;
JCSG1214 1-190 -112.000 100  PC02989A NP_051166.1 360700 Crystal|NMR-2006-10-11
NEW_HUMAN_DOMAINS 132-186 -6.120 14  sp|Q6ZMT9|DTHD1_HUMAN Death domain-containing protein 1 OS=Homo sapiens GN=DTHD1 PE=2 SV=3 (Range: 555-626)
PDB1214 12-141 -10.300 14  3we5_A mol:protein length:173 Ubiquitin conjugating enzyme
PfamA27U 1-189 -105.000 78  PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function
SCOP175 70-183 -8.540 13  d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
VFDB 70-183 -7.930 21  VFG0478 (gi:16764063) fur - transcriptional repressor of iron-responsive genes (Fur family) (ferric uptake regulator) [Salmonella enterica (serovar typhimurium) LT2] (VF0113)
6 gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31] 324 COG1214 13-320 -5.940 10  [S] COG4834 Uncharacterized protein conserved in bacteria
H.sapiens 67-259 -6.700 15  sp|Q6ZMJ4|IL34_HUMAN(removed signalp:1-20) Interleukin-34 OS=Homo sapiens GN=IL34 PE=1 SV=1
HGM_OVER 33-166 -3.450 13  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]
JCSG1214 16-324 -5.250 11  RF20611A.ACTL6A BC036371 421196 Cloned-2010-11-18
NEW_HUMAN_DOMAINS 207-310 -6.170 14  sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4 (Range: 184-277)
PDB1214 152-317 -6.710 12  1rfz_A mol:protein length:168 Hypothetical protein APC35681
PfamA27U 63-320 -9.760 12  PF09950.4; Q46YM7_CUPPJ/97-345; Uncharacterized protein conserved in bacteria (DUF2184 topsan)
SCOP175 169-317 -6.590 12  d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
VFDB 63-279 -3.870 12  VFG2347 (gi:123442783) flgF - flagellar basal-body rod protein FlgF [Yersinia enterocolitica 8081] (VF0394)
7 gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31] 153 COG1214 3-85 -5.420 13  [S] COG5605 Predicted small integral membrane protein
H.sapiens 20-104 -8.530 16  sp|Q9P144|CY014_HUMAN Putative uncharacterized protein NCRNA00185 OS=Homo sapiens GN=NCRNA00185 PE=5 SV=1
HGM_OVER 9-117 -5.560 PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
JCSG1214 1-98 -7.200 14  TM0090 TM0090 281971 Purified-2001-08-24
NEW_HUMAN_DOMAINS 23-92 -6.170 18  sp|Q16206|ENOX2_HUMAN Ecto-NOX disulfide-thiol exchanger 2 OS=Homo sapiens GN=ENOX2 PE=1 SV=2 (Range: 535-610)
PDB1214 51-146 -6.450 13  3ey7_A mol:protein length:133 Biphenyl-2,3-diol 1,2-dioxygenase III-related
PfamA27U 13-78 -35.700 30  PF13029.1; Q6YI80_BORHE/1-68; Domain of unknown function (DUF3890 topsan)
SCOP175 1-153 -5.910 d2fika2 d.19.1.1 (A:8-185) CD1, alpha-1 and alpha-2 domains {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 21-129 -5.230 17  VFG0305 (gi:15645172) cag25 - cag pathogenicity island protein (cag25) [Helicobacter pylori 26695] (VF0060)
8 gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31] 133 COG1214 31-130 -23.400 [R] COG5614 Bacteriophage head-tail adaptor
H.sapiens 31-129 -7.070 12  sp|P05198|IF2A_HUMAN Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3
HGM_OVER 1-32 -3.320 15  PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;
JCSG1214 22-130 -27.600 FP12979B DHAF_12NOV03_CONTIG1046_REVISED_GENE1067 383920 Purified-2007-12-12
NEW_HUMAN_DOMAINS 1-81 -7.260 18  sp|Q9Y561|LRP12_HUMAN Low-density lipoprotein receptor-related protein 12 OS=Homo sapiens GN=LRP12 PE=1 SV=1 (Range: 496-615)
PDB1214 31-130 -26.300 2kz4_A mol:protein length:112 Putative head-tail adaptor
PfamA27U 7-133 -87.200 97  PF07405.6; Q9R384_BORBU/1-127; Protein of unknown function (DUF1506 topsan)
SCOP175 1-130 -7.070 12  d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 16-126 -4.410 VFG1064 (gi:15808744) orf48 - unknown [Shigella flexneri (serotype 2a) YSH6000]
9 gi|11497067|ref|NP_051170.1| hypothetical protein (BB_P09) [Borrelia burgdorferi B31] 129 COG1214 41-129 -11.900 [R] COG5005 Mu-like prophage protein gpG
H.sapiens 1-125 -6.280 11  sp|Q96MZ4|CD039_HUMAN Uncharacterized protein C4orf39 OS=Homo sapiens GN=C4orf39 PE=2 SV=1
HGM_OVER 14-123 -6.490 15  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
JCSG1214 2-36 -7.870 14  SP19313A NP_249364.1 413384 Purified-2010-09-29
NEW_HUMAN_DOMAINS 5-36 -6.230 12  tr|E9PQM0|E9PQM0_HUMAN Uncharacterized protein OS=Homo sapiens GN=PTPMT1 PE=4 SV=1 (Range: 2-73)
PDB1214 32-124 -5.840 4kyd_A mol:protein length:420 Maltose-binding periplasmic protein, Phosphop
PfamA27U 1-59 -12.400 18  PF05069.8; Q9ZXL2_9CAUD/3-151; Phage virion morphogenesis family
SCOP175 29-129 -6.720 10  d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]}
VFDB 1-105 -4.460 15  VFG1959 (gi:15792749) Cj1431c - hypothetical protein Cj1431c [Campylobacter jejuni NCTC 11168] (VF0323)
10 gi|11497068|ref|NP_051171.1| hypothetical protein (BB_P10) [Borrelia burgdorferi B31] 188 COG1214 12-54 -5.440 [S] COG3602 Uncharacterized protein conserved in bacteria
H.sapiens 33-186 -6.530 16  sp|O14607|UTY_HUMAN Histone demethylase UTY OS=Homo sapiens GN=UTY PE=1 SV=2 (Range: 301-600)
HGM_OVER 29-117 -5.270 15  PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
JCSG1214 5-175 -5.650 SC.B21167A YP_384095.1 428704 Selected-2013-01-04
NEW_HUMAN_DOMAINS 1-177 -6.030 sp|Q8N157|AHI1_HUMAN Jouberin OS=Homo sapiens GN=AHI1 PE=1 SV=1 (Range: 339-555)
PDB1214 81-188 -7.530 12  3f3h_A mol:protein length:111 Immunomodulatory protein Ling Zhi-8
PfamA27U 1-181 -111.000 80  PF05561.6; Q0SLB2_BORAP/1-182; Borrelia burgdorferi protein of unknown function (DUF764 topsan)
SCOP175 12-54 -6.390 11  d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
VFDB 20-188 -5.090 13  VFG1577 (gi:23954260) orf43 - hypothetical protein [Escherichia coli 536]
11 gi|11497095|ref|NP_051172.1| hypothetical protein (BB_P11) [Borrelia burgdorferi B31] 370 COG1214 37-288 -4.900 13  [T] COG5040 14-3-3 family protein
H.sapiens 145-355 -6.350 20  sp|Q5VWN6|CJ018_HUMAN Uncharacterized protein C10orf18 OS=Homo sapiens GN=C10orf18 PE=1 SV=1 (Range: 2101-2400)
HGM_OVER 152-303 -2.510 15  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
JCSG1214 1-369 -126.000 48  PC05619A NP_045719.1 360717 Crystal|NMR-2006-02-19
NEW_HUMAN_DOMAINS 145-369 -6.050 19  sp|Q9UK61|CC063_HUMAN Uncharacterized protein C3orf63 OS=Homo sapiens GN=C3orf63 PE=1 SV=3 (Range: 1205-1474)
PDB1214 163-324 -6.350 11  2xgr_A mol:protein length:252 SPD1 NUCLEASE
PfamA27U 1-361 -138.000 95  PF05619.6; Q9S003_BORBU/1-362; Borrelia burgdorferi protein of unknown function (DUF787 topsan)
SCOP175 167-258 -5.470 11  d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 163-324 -6.350 11  VFG0970 (gi:15674770) mf2 - putative DNase (similar to mitogenic factor), phage associated [Streptococcus pyogenes SF370] (VF0252)
12 gi|11497096|ref|NP_051173.1| hypothetical protein (BB_P12) [Borrelia burgdorferi B31] 142 COG1214 10-131 -6.070 13  [S] COG3358 Uncharacterized conserved protein
H.sapiens 47-120 -6.180 17  sp|Q13201|MMRN1_HUMAN(removed signalp:1-19) Multimerin-1 OS=Homo sapiens GN=MMRN1 PE=1 SV=3 (Range: 1051-1209)
HGM_OVER 11-133 -4.040 20  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
JCSG1214 4-136 -6.890 12  MI15789A YP_298711.1 398851 Crystal|NMR-2009-11-07
NEW_HUMAN_DOMAINS 49-132 -8.580 14  sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A OS=Homo sapiens GN=BAZ2A PE=1 SV=4 (Range: 911-1016)
PDB1214 8-120 -7.110 2wff_2 mol:protein length:230 P1
PfamA27U 1-140 -109.000 99  PF07316.6; Q9S002_BORBU/1-140; Protein of unknown function (DUF1463 topsan)
SCOP175 6-132 -5.810 18  d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-127 -5.170 17  VFG0561 (gi:16766206) invH - invasion protein [Salmonella enterica (serovar typhimurium) LT2] (VF0116)
13 gi|11497097|ref|NP_051174.1| hypothetical protein (BB_P13) [Borrelia burgdorferi B31] 151 COG1214 1-151 -7.160 10  [U] KOG1688 Golgi proteins involved in ER retention (RER)
H.sapiens 35-111 -6.830 17  sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 (Range: 1051-1350)
HGM_OVER 2-128 -4.860 11  PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
JCSG1214 43-87 -6.180 22  TM0526 TM0526 282399 Purified-2001-10-10
NEW_HUMAN_DOMAINS 8-73 -6.430 13  sp|Q8NA66|CNBD1_HUMAN Cyclic nucleotide-binding domain-containing protein 1 OS=Homo sapiens GN=CNBD1 PE=2 SV=1 (Range: 1-82)
PDB1214 2-150 -6.090 18  4nq3_A mol:protein length:356 Cyanuric acid amidohydrolase
PfamA27U 3-147 -94.300 44  PF07341.6; Q6ASH9_BORGA/1-163; Protein of unknown function (DUF1473 topsan)
SCOP175 27-88 -6.410 19  d1u3em1 d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
VFDB 23-90 -5.690 16  VFG1727 (gi:26249441) c3606 - Hypothetical protein [Escherichia coli CFT073]
14 gi|11497098|ref|NP_051175.1| hypothetical protein (BB_P14) [Borrelia burgdorferi B31] 78 COG1214 2-71 -6.740 21  [S] COG3195 Uncharacterized protein conserved in bacteria
H.sapiens 27-78 -7.010 18  sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1 (Range: 151-450)
HGM_OVER 20-70 -2.550 19  PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]
JCSG1214 9-74 -5.760 21  SC.B21204A ZP_01994184.1 428871 Selected-2013-01-04
NEW_HUMAN_DOMAINS 16-73 -6.800 17  sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2 (Range: 1385-1445)
PDB1214 26-74 -6.670 14  2wsc_E mol:protein length:143 PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, C
PfamA27U 1-78 -61.400 92  PF07032.6; O87309_BORBG/1-78; Protein of unknown function (DUF1322 topsan)
SCOP175 26-62 -6.900 10  d1jb0e_ b.34.4.2 (E:) Photosystem I accessory protein E (PsaE) {Synechococcus elongatus [TaxId: 32046]}
VFDB 37-63 -7.170 33  VFG0020 (gi:33594647) ptlI - putative bacterial secretion system protein [Bordetella pertussis Tohama I] (VF0026)
15 gi|11497099|ref|NP_051176.1| hypothetical protein (BB_P15) [Borrelia burgdorferi B31] 424 COG1214 1-380 -21.600 12  [S] COG5280 Phage-related minor tail protein
1-423 -14.700 [S] COG5412 Phage-related protein
H.sapiens 1-346 -11.700 11  sp|Q8N1N0|CLC4F_HUMAN C-type lectin domain family 4 member F OS=Homo sapiens GN=CLEC4F PE=2 SV=2
HGM_OVER 8-140 -6.720 15  PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
JCSG1214 1-423 -9.890 SP17722G ZP_01996324.1 410713 Selected-2009-11-12
14-380 -16.000 CC20746A NP_420296.1 423187 Purified-2011-04-15
NEW_HUMAN_DOMAINS 2-128 -9.030 15  sp|Q68CZ6|HAUS3_HUMAN HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1 SV=1 (Range: 442-603)
PDB1214 3-131 -9.180 10  1mql_B mol:protein length:221 Hemagglutinin HA2 chain
PfamA27U 1-423 -40.000 53  PF05537.6; Q5XYW7_BORGA/1-431; Borrelia burgdorferi protein of unknown function (DUF759 topsan)
SCOP175 20-132 -7.190 d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
VFDB 1-383 -11.000 VFG1097 (gi:15641767) VC1764 - hypothetical protein [Vibrio cholerae N16961]
99-406 -11.100 VFG1124 (gi:15641794) VC1791 - conserved hypothetical protein [Vibrio cholerae N16961]
16 gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31] 227 COG1214 181-227 -5.660 23  [R] COG2351 Transthyretin-like protein
H.sapiens 40-211 -6.700 sp|Q9NYK1|TLR7_HUMAN(removed signalp:1-26) Toll-like receptor 7 OS=Homo sapiens GN=TLR7 PE=1 SV=1 (Range: 1-300)
HGM_OVER 110-213 -3.880 15  PB045813 Q5LF03_BACFN/1-275 PB045813; Pfam-B_45813;
JCSG1214 76-217 -5.930 10  TM1627 TM1627 283484 Purified-2001-11-20
NEW_HUMAN_DOMAINS 165-227 -6.760 15  tr|F2Z350|F2Z350_HUMAN Uncharacterized protein OS=Homo sapiens GN=C13orf16 PE=4 SV=1 (Range: 1-84)
PDB1214 125-227 -7.940 17  2h0e_A mol:protein length:121 Transthyretin-like protein pucM
PfamA27U 15-227 -127.000 90  PF05632.6; Q5XYW8_BORGA/15-227; Borrelia burgdorferi protein of unknown function (DUF792 topsan)
SCOP175 82-204 -7.010 12  d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}
VFDB 50-217 -4.510 11  VFG2131 (gi:15605291) yscR - type III secretion protein [Chlamydia trachomatis D/UW-3/CX] (VF0344)
17 gi|11497101|ref|NP_051178.1| hypothetical protein (BB_P17) [Borrelia burgdorferi B31] 316 COG1214 26-98 -6.630 21  [S] COG2914 Uncharacterized protein conserved in bacteria
H.sapiens 33-275 -5.960 11  sp|Q02846|GUC2D_HUMAN(removed signalp:1-51) Retinal guanylyl cyclase 1 OS=Homo sapiens GN=GUCY2D PE=1 SV=2 (Range: 451-750)
HGM_OVER 74-204 -3.750 14  PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
JCSG1214 26-98 -6.460 23  EC5331A NP_417108.2 358304 Purified-2004-06-01
NEW_HUMAN_DOMAINS 48-194 -4.660 18  sp|P42858|HD_HUMAN Huntingtin OS=Homo sapiens GN=HTT PE=1 SV=2 (Range: 2952-3142)
PDB1214 26-98 -6.580 26  2hj1_A mol:protein length:97 Hypothetical protein
PfamA27U 1-314 -143.000 87  PF05113.8; Q5XZ60_BORGA/9-322; Protein of unknown function (DUF693 topsan)
SCOP175 26-87 -5.780 27  d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}
VFDB 35-235 -4.830 12  VFG0420 (gi:16082874) caf1M - putative F1 chaperone protein [Yersinia pestis CO92] (VF0138)
18 gi|11497102|ref|NP_051179.1| hypothetical protein (BB_P18) [Borrelia burgdorferi B31] 181 COG1214 41-160 -6.500 12  [S] COG5375 Uncharacterized protein conserved in bacteria
H.sapiens 9-153 -7.350 sp|Q9UKA4|AKA11_HUMAN A-kinase anchor protein 11 OS=Homo sapiens GN=AKAP11 PE=1 SV=1 (Range: 1-300)
HGM_OVER 24-154 -3.230 10  HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;
JCSG1214 3-178 -83.200 32  PJ05606B NP_045729.1 374248 Crystal|NMR-2007-05-22
NEW_HUMAN_DOMAINS 33-94 -6.630 sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1 (Range: 3588-3727)
PDB1214 60-146 -7.190 10  4g2s_A mol:protein length:111 Protein prgH
PfamA27U 1-181 -106.000 96  PF05606.6; Q5XYX0_BORGA/1-181; Borrelia burgdorferi protein of unknown function (DUF777 topsan)
SCOP175 5-179 -6.630 11  d1qfxa_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Aspergillus niger [TaxId: 5061]}
VFDB 61-153 -5.850 14  VFG0591 (gi:16764448) pipC - Pathogenicity island encoded protein: homologous to ipgE of Shigella [Salmonella enterica (serovar typhimurium) LT2]
19 gi|11497069|ref|NP_051180.1| hypothetical protein (BB_P19) [Borrelia burgdorferi B31] 110 COG1214 1-110 -29.400 14  [S] COG4381 Mu-like prophage protein gp46
H.sapiens 3-54 -5.520 15  sp|Q6ZRR9|DCDC5_HUMAN Doublecortin domain-containing protein 5 OS=Homo sapiens GN=DCDC5 PE=2 SV=2 (Range: 451-648)
HGM_OVER 3-100 -2.380 12  PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG1214 2-110 -33.200 18  PE00139C YP_389879.1 367918 Purified-2006-06-19
NEW_HUMAN_DOMAINS 2-39 -5.750 15  sp|P42229|STA5A_HUMAN Signal transducer and activator of transcription 5A OS=Homo sapiens GN=STAT5A PE=1 SV=1 (Range: 713-794)
PDB1214 1-110 -22.900 10  2ia7_A mol:protein length:134 Tail lysozyme, putative
PfamA27U 1-110 -60.300 81  PF07115.6; Q5XZ58_BORGA/1-110; Protein of unknown function (DUF1371 topsan)
SCOP175 16-110 -21.800 13  d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
VFDB 1-110 -13.800 12  VFG2094 (gi:15600880) VCA0109 - hypothetical protein [Vibrio cholerae N16961] (VF0335)
20 gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31] 291 COG1214 1-269 -5.540 [S] COG4285 Uncharacterized conserved protein
H.sapiens 47-190 -6.280 15  sp|Q9NWF9|RN216_HUMAN E3 ubiquitin-protein ligase RNF216 OS=Homo sapiens GN=RNF216 PE=1 SV=3 (Range: 151-450)
HGM_OVER 154-250 -3.570 12  PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)
JCSG1214 2-291 -7.630 11  RH10602A NP_815200.1 416148 Selected-2009-12-04
NEW_HUMAN_DOMAINS 17-92 -6.390 20  sp|Q9UIB8|SLAF5_HUMAN SLAM family member 5 OS=Homo sapiens GN=CD84 PE=1 SV=1 (Range: 247-345)
PDB1214 44-221 -7.970 15  2jeu_A mol:protein length:209 REGULATORY PROTEIN E2
PfamA27U 1-290 -131.000 90  PF03434.8; Q0SLC5_BORAP/1-291; DUF276 topsan
SCOP175 44-236 -6.570 13  d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain {Human papillomavirus type 16 [TaxId: 333760]}
VFDB 32-239 -4.620 VFG0364 (gi:16122160) ybtA - transcriptional regulator YbtA [Yersinia pestis CO92] (VF0136)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhao Y, Hong DH, Pawlyk B, Yue G, Adamian M, Grynberg M, Godzik A., Li T. The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3965-70. Epub 2003 Mar 21.