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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31] 407 COG0516 2-407 -85.300 14  [S] COG3567 Uncharacterized protein conserved in bacteria
H.sapiens 326-405 -6.660 14  sp|Q8NHS0|DNJB8_HUMAN DnaJ homolog subfamily B member 8 OS=Homo sapiens GN=DNAJB8 PE=1 SV=1
HGM_OVER 225-317 -4.460 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
JCSG0516 8-407 -80.800 17  RH10244A YP_001714331.1 415782 Selected-2009-12-04
NEW_HUMAN_DOMAINS 232-403 -5.360 sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5 (Range: 1023-1189)
PDB0516 11-403 -11.200 3ja7_A mol:protein length:455 Portal protein gp20
PfamA30U 13-382 -84.900 14  PF06381.9; Q11J16_CHESB/39-389; Protein of unknown function (DUF1073 topsan)
SCOP206 234-398 -5.320 d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 202-403 -5.120 VFG016286(gi:42781039) (nheC) non-hemolytic enterotoxin C [Nhe (VF0533)] [Bacillus cereus ATCC 10987]
2 gi|11497091|ref|NP_051163.1| hypothetical protein (BB_P02) [Borrelia burgdorferi B31] 230 COG0516 1-131 -8.090 14  [K] KOG4479 Transcription factor e(y)2
H.sapiens 95-130 -6.920 30  sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2 (Range: 601-900)
HGM_OVER 21-171 -4.600 10  PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
JCSG0516 64-143 -6.050 18  TB1124D NP_249784.1 357791 Purified-2004-06-11
NEW_HUMAN_DOMAINS 88-166 -4.990 13  tr|Q86X87|Q86X87_HUMAN HCG39249, isoform CRA_d OS=Homo sapiens GN=UBOX5 PE=2 SV=1 (Range: 1-83)
PDB0516 61-164 -6.280 14  3hvw_A mol:protein length:176 Diguanylate-cyclase (DGC)
PfamA30U 1-223 -110.000 96  PF07094.9; Q9RZX9_BORBU/1-223; Protein of unknown function (DUF1357 topsan)
SCOP206 1-151 -6.200 13  d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]}
VFDB 64-143 -6.220 VFG001908(gi:15791908) (flaG) flagellar protein FlaG [Flagella (VF0114)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
3 gi|11497092|ref|NP_051164.1| hypothetical protein (BB_P03) [Borrelia burgdorferi B31] 185 COG0516 12-128 -8.780 18  [O] KOG0421 Ubiquitin-protein ligase
H.sapiens 11-159 -9.290 13  sp|Q16763|UBE2S_HUMAN Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2
HGM_OVER 104-180 -4.170 10  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
JCSG0516 2-185 -100.000 82  PU6478A NP_051250.1 381700 Crystal|NMR-2009-03-07
NEW_HUMAN_DOMAINS 2-179 -5.550 12  sp|O60291|MGRN1_HUMAN E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2 (Range: 23-255)
PDB0516 1-128 -9.840 16  2e2c_A mol:protein length:156 UBIQUITIN CONJUGATING ENZYME
PfamA30U 1-184 -97.400 51  PF02989.12; Q9S0D2_BORBU/1-190; Lyme disease proteins of unknown function
SCOP206 11-157 -9.460 12  d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 S [TaxId: 9606]}
VFDB 75-184 -7.010 16  VFG000272(gi:15644700) (ureE) urease accessory protein (ureE) [Urease (VF0050)] [Helicobacter pylori 26695]
4 gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31] 254 COG0516 18-174 -8.120 15  [O] KOG0421 Ubiquitin-protein ligase
H.sapiens 25-174 -7.600 15  sp|O00762|UBE2C_HUMAN Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1
HGM_OVER 9-178 -5.440 10  PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]
JCSG0516 46-248 -84.600 36  PC02989A NP_051166.1 360700 Crystal|NMR-2006-10-11
NEW_HUMAN_DOMAINS 109-210 -8.350 14  tr|Q49A14|Q49A14_HUMAN CCDC108 protein OS=Homo sapiens GN=CCDC108 PE=2 SV=1 (Range: 1-123)
PDB0516 23-173 -7.650 4ds2_A mol:protein length:167 Ubiquitin-conjugating enzyme E2, putative
PfamA30U 46-247 -83.600 37  PF02989.12; Q9S0D2_BORBU/1-190; Lyme disease proteins of unknown function
SCOP206 28-173 -7.230 d4ds2a_ d.20.1.0 (A:) automated matches {Trypanosoma cruzi [TaxId: 5693]}
VFDB 1-215 -5.370 12  VFG002159(gi:16803116) (aut) autolysin [Auto (VF0348)] [Listeria monocytogenes EGD-e]
5 gi|11497094|ref|NP_051166.1| hypothetical protein (BB_P05) [Borrelia burgdorferi B31] 190 COG0516 12-132 -6.690 20  [O] KOG0421 Ubiquitin-protein ligase
H.sapiens 61-190 -8.060 16  sp|Q9UBL3|ASH2L_HUMAN Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo sapiens GN=ASH2L PE=1 SV=1 (Range: 451-628)
HGM_OVER 1-148 -5.510 PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;
JCSG0516 1-190 -110.000 100  PC02989A NP_051166.1 360700 Crystal|NMR-2006-10-11
NEW_HUMAN_DOMAINS 97-134 -5.680 24  sp|P56715|RP1_HUMAN Oxygen-regulated protein 1 OS=Homo sapiens GN=RP1 PE=1 SV=1 (Range: 1905-1964)
PDB0516 12-141 -10.300 14  3we5_A mol:protein length:173 Ubiquitin conjugating enzyme
PfamA30U 1-189 -106.000 88  PF02989.12; Q9S0D2_BORBU/1-190; Lyme disease proteins of unknown function
SCOP206 70-183 -8.720 13  d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
VFDB 88-152 -4.070 15  VFG007178(gi:28898474) (virG) Type III secretion system chaperone VscW [T3SS1 (VF0408)] [Vibrio parahaemolyticus RIMD 2210633]
6 gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31] 324 COG0516 34-320 -6.780 12  [S] COG4834 Uncharacterized protein conserved in bacteria
H.sapiens 110-306 -6.120 13  sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2 (Range: 1051-1268)
HGM_OVER 22-166 -3.590 13  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]
JCSG0516 126-315 -5.630 10  RH20054A YP_001635660.1 415177 Selected-2009-12-04
NEW_HUMAN_DOMAINS 207-310 -6.220 14  sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4 (Range: 184-277)
PDB0516 169-317 -6.320 12  1y9i_A mol:protein length:178 low temperature requirement C protein
PfamA30U 56-320 -9.480 13  PF09950.7; H8L668_FRAAD/90-334; Uncharacterized protein conserved in bacteria (DUF2184 topsan)
SCOP206 159-317 -6.470 12  d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
VFDB 63-317 -4.060 12  VFG001999(gi:52841457) (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0157)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
7 gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31] 153 COG0516 3-85 -5.390 13  [S] COG5605 Predicted small integral membrane protein
H.sapiens 20-104 -8.450 16  sp|Q9P144|CY014_HUMAN Putative uncharacterized protein NCRNA00185 OS=Homo sapiens GN=NCRNA00185 PE=5 SV=1
HGM_OVER 9-117 -5.720 PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
JCSG0516 1-98 -7.330 14  TM0090 TM0090 281971 Purified-2001-08-24
NEW_HUMAN_DOMAINS 24-92 -6.270 17  sp|Q8TC92|ENOX1_HUMAN Ecto-NOX disulfide-thiol exchanger 1 OS=Homo sapiens GN=ENOX1 PE=1 SV=1 (Range: 570-643)
PDB0516 35-150 -6.230 11  5hp0_A mol:protein length:122 CREB-binding protein,Cellular tumor antigen p
PfamA30U 1-78 -36.500 32  PF13029.4; O50935_BORBU/1-84; Domain of unknown function (DUF3890 topsan)
SCOP206 13-153 -7.970 11  d3jvga1 d.19.1.0 (A:6-180) automated matches {Chicken (Gallus gallus) [TaxId: 9031]}
VFDB 21-129 -5.010 15  VFG000305(gi:15645172) (virB2/cagC) type IV secretion system protein Cag25/CagC, VirB2 homolog [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]
8 gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31] 133 COG0516 10-130 -24.100 [R] COG5614 Bacteriophage head-tail adaptor
H.sapiens 42-112 -7.090 11  sp|Q7Z353|HDX_HUMAN Highly divergent homeobox OS=Homo sapiens GN=HDX PE=1 SV=1 (Range: 151-450)
HGM_OVER 1-32 -3.540 15  PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;
JCSG0516 22-130 -27.200 FP12979B DHAF_12NOV03_CONTIG1046_REVISED_GENE1067 383920 Purified-2007-12-12
NEW_HUMAN_DOMAINS 1-95 -7.440 17  sp|Q9Y561|LRP12_HUMAN Low-density lipoprotein receptor-related protein 12 OS=Homo sapiens GN=LRP12 PE=1 SV=1 (Range: 496-615)
PDB0516 32-130 -27.100 2kz4_A mol:protein length:112 Putative head-tail adaptor
PfamA30U 7-133 -87.300 92  PF07405.9; Q9R2M2_BORBU/1-127; Protein of unknown function (DUF1506 topsan)
SCOP206 97-128 -6.790 18  d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
VFDB 12-129 -5.000 14  VFG018680(gi:28901182) (vopT) type III secretion system effector VopT, ADP-ribosyltransferase [T3SS2 (VF0409)] [Vibrio parahaemolyticus RIMD 2210633]
9 gi|11497067|ref|NP_051170.1| hypothetical protein (BB_P09) [Borrelia burgdorferi B31] 129 COG0516 51-129 -10.700 [R] COG5005 Mu-like prophage protein gpG
H.sapiens 1-128 -6.450 11  sp|Q5JRX3|PREP_HUMAN Presequence protease, mitochondrial OS=Homo sapiens GN=PITRM1 PE=1 SV=2 (Range: 1-300)
HGM_OVER 14-123 -6.590 15  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
JCSG0516 2-36 -7.790 14  SP19313A NP_249364.1 413384 Purified-2010-09-29
NEW_HUMAN_DOMAINS 5-116 -5.710 sp|Q9GZN8|CT027_HUMAN UPF0687 protein C20orf27 OS=Homo sapiens GN=C20orf27 PE=1 SV=3 (Range: 30-174)
PDB0516 1-81 -6.320 2es7_A mol:protein length:142 putative thiol-disulfide isomerase and thiore
PfamA30U 1-46 -13.500 23  PF05069.11; A1VSG9_POLNA/4-154; Phage virion morphogenesis family
SCOP206 29-129 -6.650 10  d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]}
VFDB 11-125 -5.560 VFG000462(gi:16764495) (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
10 gi|11497068|ref|NP_051171.1| hypothetical protein (BB_P10) [Borrelia burgdorferi B31] 188 COG0516 12-54 -5.790 [S] COG3602 Uncharacterized protein conserved in bacteria
H.sapiens 1-176 -6.790 sp|Q8N157|AHI1_HUMAN Jouberin OS=Homo sapiens GN=AHI1 PE=1 SV=1 (Range: 301-600)
HGM_OVER 29-117 -4.910 15  PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
JCSG0516 5-175 -6.050 SC.B21167A YP_384095.1 428704 Selected-2013-01-04
NEW_HUMAN_DOMAINS 16-76 -6.290 21  sp|O75626|PRDM1_HUMAN PR domain zinc finger protein 1 OS=Homo sapiens GN=PRDM1 PE=1 SV=2 (Range: 369-458)
PDB0516 93-188 -6.960 12  5hel_A mol:protein length:126 Bromodomain-containing protein 2
PfamA30U 1-179 -110.000 92  PF05561.9; Q9S0C9_BORBU/1-180; Borrelia burgdorferi protein of unknown function (DUF764 topsan)
SCOP206 12-54 -6.440 11  d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
VFDB 2-153 -5.360 15  VFG002035(gi:13508186) (hmw1) cytadherence accessory protein HMW1 [Cytadherence organelle (VF0330)] [Mycoplasma pneumoniae M129]
11 gi|11497095|ref|NP_051172.1| hypothetical protein (BB_P11) [Borrelia burgdorferi B31] 370 COG0516 155-307 -4.940 17  [EH] KOG0945 Alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase
H.sapiens 142-355 -6.210 20  sp|Q5VWN6|CJ018_HUMAN Uncharacterized protein C10orf18 OS=Homo sapiens GN=C10orf18 PE=1 SV=1 (Range: 2101-2400)
HGM_OVER 152-303 -2.660 15  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
JCSG0516 1-369 -127.000 48  PC05619A NP_045719.1 360717 Crystal|NMR-2006-02-19
NEW_HUMAN_DOMAINS 145-370 -5.980 19  sp|Q9UK61|CC063_HUMAN Uncharacterized protein C3orf63 OS=Homo sapiens GN=C3orf63 PE=1 SV=3 (Range: 1205-1474)
PDB0516 176-280 -6.380 27  5fhc_J mol:protein length:98 Envelope glycoprotein
PfamA30U 1-361 -139.000 95  PF05619.9; Q9S003_BORBU/1-362; Borrelia burgdorferi protein of unknown function (DUF787 topsan)
SCOP206 231-367 -6.260 12  d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 165-324 -5.620 11  VFG000970(gi:15674770) (mf2) deoxyribonuclease, phage associated [DNase (VF0252)] [Streptococcus pyogenes M1 GAS]
12 gi|11497096|ref|NP_051173.1| hypothetical protein (BB_P12) [Borrelia burgdorferi B31] 142 COG0516 10-131 -5.380 13  [S] COG3358 Uncharacterized conserved protein
H.sapiens 50-123 -6.000 13  sp|Q8IXI1|MIRO2_HUMAN Mitochondrial Rho GTPase 2 OS=Homo sapiens GN=RHOT2 PE=1 SV=2 (Range: 451-618)
HGM_OVER 11-124 -3.760 12  PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
JCSG0516 17-135 -7.170 18  FK7706B YP_324227.1 371471 Crystal|NMR-2007-01-05
NEW_HUMAN_DOMAINS 49-132 -9.300 14  sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A OS=Homo sapiens GN=BAZ2A PE=1 SV=4 (Range: 911-1016)
PDB0516 8-120 -7.600 2wff_2 mol:protein length:230 P1
PfamA30U 3-139 -108.000 98  PF07316.9; Q9S050_BORBU/3-139; Protein of unknown function (DUF1463 topsan)
SCOP206 23-107 -6.570 15  d2md5a1 a.4.5.0 (A:329-426) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 1-120 -5.100 12  VFG041306(gi:52842181) (pieB/lirD) Dot/Icm type IV secretion system effector PieB/LirD [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 gi|11497097|ref|NP_051174.1| hypothetical protein (BB_P13) [Borrelia burgdorferi B31] 151 COG0516 1-151 -6.670 10  [U] KOG1688 Golgi proteins involved in ER retention (RER)
H.sapiens 3-147 -6.620 11  sp|O94952|FBX21_HUMAN F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2 (Range: 451-628)
HGM_OVER 12-128 -4.820 11  PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
JCSG0516 43-87 -6.330 22  TM0526 TM0526 282399 Purified-2001-10-10
NEW_HUMAN_DOMAINS 23-114 -5.690 13  sp|Q92608|DOCK2_HUMAN Dedicator of cytokinesis protein 2 OS=Homo sapiens GN=DOCK2 PE=1 SV=2 (Range: 618-857)
PDB0516 43-87 -6.250 22  4y91_A mol:protein length:95 RNA-binding protein Hfq
PfamA30U 3-147 -92.300 44  PF07341.9; Q6ASH9_BORBP/1-163; Protein of unknown function (DUF1473 topsan)
SCOP206 27-88 -6.460 19  d1u3em1 d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SPO1 [TaxId: 10685]}
VFDB 22-146 -4.590 14  VFG013487(gi:16273583) (lsgE) glycosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
14 gi|11497098|ref|NP_051175.1| hypothetical protein (BB_P14) [Borrelia burgdorferi B31] 78 COG0516 2-71 -7.180 21  [S] COG3195 Uncharacterized protein conserved in bacteria
H.sapiens 27-78 -7.170 18  sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1 (Range: 301-600)
HGM_OVER 17-56 -2.370 15  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
JCSG0516 8-73 -5.880 21  SC.B21204A ZP_01994184.1 428871 Selected-2013-01-04
NEW_HUMAN_DOMAINS 6-61 -6.210 21  sp|Q9H8G2|CI082_HUMAN Uncharacterized protein C9orf82 OS=Homo sapiens GN=C9orf82 PE=1 SV=2 (Range: 132-194)
PDB0516 2-73 -7.390 20  2o8i_A mol:protein length:165 Hypothetical protein Atu2327
PfamA30U 1-78 -59.600 94  PF07032.9; Q9S0C7_BORBU/1-78; Protein of unknown function (DUF1322 topsan)
SCOP206 2-73 -7.390 20  d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]}
VFDB 37-66 -7.340 30  VFG000020(gi:33594647) (ptlI) Ptl Type IV secretion system outer membrane complex protein PtlI [Ptx (VF0026)] [Bordetella pertussis Tohama I]
15 gi|11497099|ref|NP_051176.1| hypothetical protein (BB_P15) [Borrelia burgdorferi B31] 424 COG0516 1-422 -19.700 10  [S] COG5280 Phage-related minor tail protein
H.sapiens 14-343 -10.800 10  sp|Q9BXX0|EMIL2_HUMAN(removed signalp:1-30) EMILIN-2 OS=Homo sapiens GN=EMILIN2 PE=1 SV=3 (Range: 451-750)
16-273 -11.300 11  sp|Q9Y6C2|EMIL1_HUMAN(removed signalp:1-23) EMILIN-1 OS=Homo sapiens GN=EMILIN1 PE=1 SV=2 (Range: 301-600)
91-423 -9.510 10  sp|Q96Q06|PLIN4_HUMAN(removed signalp:1-17) Perilipin-4 OS=Homo sapiens GN=PLIN4 PE=2 SV=2 (Range: 601-900)
HGM_OVER 1-132 -6.880 PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
JCSG0516 1-399 -11.000 10  SP13496P NP_810739.1 408731 Selected-2009-11-12
14-364 -14.600 CC20746A NP_420296.1 423187 Purified-2011-04-15
NEW_HUMAN_DOMAINS 3-128 -9.490 16  sp|Q68CZ6|HAUS3_HUMAN HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1 SV=1 (Range: 442-603)
PDB0516 12-132 -9.770 3mtt_A mol:protein length:187 Phosphatidylinositol 3-kinase regulatory subu
PfamA30U 1-422 -84.800 94  PF05537.9; Q9S0I6_BORBU/1-422; Borrelia burgdorferi protein of unknown function (DUF759 topsan)
SCOP206 18-175 -7.840 11  d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Tobacco hornworm (Manduca sexta) [TaxId: 7130]}
VFDB 19-342 -9.060 VFG016254(gi:30021213) (hblA) Hemolysin BL binding component precursor [HBL (VF0532)] [Bacillus cereus ATCC 14579]
16 gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31] 227 COG0516 44-226 -5.430 11  [U] KOG2740 Clathrin-associated protein medium chain
H.sapiens 92-220 -7.250 17  sp|Q8WXX0|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2 (Range: 1801-2100)
HGM_OVER 5-224 -3.080 15  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
JCSG0516 15-177 -6.460 TM1586 TM1586 283443 PDB-2004-06-24
NEW_HUMAN_DOMAINS 165-227 -6.690 15  tr|F2Z350|F2Z350_HUMAN Uncharacterized protein OS=Homo sapiens GN=C13orf16 PE=4 SV=1 (Range: 1-84)
PDB0516 43-227 -7.790 12  2f1x_A mol:protein length:161 HAUSP/USP7
PfamA30U 20-227 -122.000 88  PF05632.9; Q9S092_BORBU/6-213; Borrelia burgdorferi protein of unknown function (DUF792 topsan)
SCOP206 82-204 -7.480 12  d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}
VFDB 23-225 -4.710 10  VFG045598(gi:52843024) (lpg2828) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
17 gi|11497101|ref|NP_051178.1| hypothetical protein (BB_P17) [Borrelia burgdorferi B31] 316 COG0516 26-98 -6.510 21  [S] COG2914 Uncharacterized protein conserved in bacteria
H.sapiens 78-316 -6.260 13  sp|Q7Z6J4|FGD2_HUMAN FYVE, RhoGEF and PH domain-containing protein 2 OS=Homo sapiens GN=FGD2 PE=2 SV=1 (Range: 301-600)
HGM_OVER 59-204 -3.540 13  PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
JCSG0516 26-98 -6.490 23  EC5331A NP_417108.2 358304 Purified-2004-06-01
NEW_HUMAN_DOMAINS 234-315 -4.750 17  tr|E9PMQ3|E9PMQ3_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZFPL1 PE=4 SV=1 (Range: 1-109)
PDB0516 26-98 -6.560 26  2hj1_A mol:protein length:97 Hypothetical protein
PfamA30U 1-311 -136.000 99  PF05113.11; Q9S0F4_BORBU/1-311; Protein of unknown function (DUF693 topsan)
SCOP206 26-87 -5.840 27  d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}
VFDB 35-235 -5.090 12  VFG000420(gi:16082874) (caf1M) putative F1 chaperone protein [F1 antigen (VF0138)] [Yersinia pestis CO92]
18 gi|11497102|ref|NP_051179.1| hypothetical protein (BB_P18) [Borrelia burgdorferi B31] 181 COG0516 34-101 -6.100 17  [S] KOG4147 Uncharacterized conserved protein
H.sapiens 20-153 -7.180 sp|Q9UKA4|AKA11_HUMAN A-kinase anchor protein 11 OS=Homo sapiens GN=AKAP11 PE=1 SV=1 (Range: 1-300)
HGM_OVER 62-159 -3.050 10  HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
JCSG0516 3-178 -83.200 32  PJ05606B NP_045729.1 374248 Crystal|NMR-2007-05-22
NEW_HUMAN_DOMAINS 33-94 -6.780 sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1 (Range: 3588-3727)
PDB0516 20-171 -9.770 11  4ru3_A mol:protein length:221 puncturing protein gp41
PfamA30U 1-181 -107.000 100  PF05606.9; Q9R2V1_BORBU/1-181; Borrelia burgdorferi protein of unknown function (DUF777 topsan)
SCOP206 5-171 -6.650 10  d1qfxa_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Aspergillus niger [TaxId: 5061]}
VFDB 61-179 -7.230 10  VFG002484(gi:53722528) (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
19 gi|11497069|ref|NP_051180.1| hypothetical protein (BB_P19) [Borrelia burgdorferi B31] 110 COG0516 1-109 -26.400 14  [S] COG4381 Mu-like prophage protein gp46
H.sapiens 18-95 -5.220 11  sp|Q52M75|CE027_HUMAN Putative uncharacterized protein C5orf27 OS=Homo sapiens GN=C5orf27 PE=2 SV=2
HGM_OVER 1-92 -3.280 PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;
JCSG0516 2-110 -32.800 18  PE00139C YP_389879.1 367918 Purified-2006-06-19
NEW_HUMAN_DOMAINS 24-105 -6.240 11  sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens GN=CELSR1 PE=1 SV=1 (Range: 1201-1295)
PDB0516 14-110 -21.300 18  4hrz_A mol:protein length:134 Tail lysozyme
PfamA30U 14-99 -23.900 PF10934.6; A5I4A4_CLOBH/29-134; Protein of unknown function (DUF2634 topsan)
SCOP206 16-110 -20.400 13  d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
VFDB 1-110 -13.100 VFG002477(gi:53722521) (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
20 gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31] 291 COG0516 1-269 -5.310 [S] COG4285 Uncharacterized conserved protein
H.sapiens 72-192 -6.000 14  sp|P05230|FGF1_HUMAN Heparin-binding growth factor 1 OS=Homo sapiens GN=FGF1 PE=1 SV=1
HGM_OVER 154-250 -3.400 12  PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)
JCSG0516 2-291 -7.830 11  RH10602A NP_815200.1 416148 Selected-2009-12-04
NEW_HUMAN_DOMAINS 17-92 -6.590 20  sp|Q9UIB8|SLAF5_HUMAN SLAM family member 5 OS=Homo sapiens GN=CD84 PE=1 SV=1 (Range: 247-345)
PDB0516 44-221 -8.190 15  2jeu_A mol:protein length:209 REGULATORY PROTEIN E2
PfamA30U 1-290 -128.000 100  PF03434.11; Q9R331_BORBU/1-290; DUF276 topsan
SCOP206 46-221 -8.110 15  d2jexa_ b.91.1.0 (A:) automated matches {Bovine papillomavirus type 1 [TaxId: 10559]}
VFDB 79-208 -4.780 15  VFG000014(gi:33594641) (ptxE) pertussis toxin subunit 5 precursor [Ptx (VF0026)] [Bordetella pertussis Tohama I]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.