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Results: 1-20 of 1693next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31] 407 COG0614 2-407 -86.700 13  [S] COG3567 Uncharacterized protein conserved in bacteria
H.sapiens 326-405 -7.420 14  sp|Q8NHS0|DNJB8_HUMAN DnaJ homolog subfamily B member 8 OS=Homo sapiens GN=DNAJB8 PE=1 SV=1
HGM_OVER 223-317 -3.490 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 277-389 -5.540 sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900 OS=Homo sapiens PE=1 SV=2 (Range: 411-510)
PDB0614 24-403 -8.370 2jes_A mol:protein length:503 PORTAL PROTEIN
PfamA27U 10-385 -82.100 14  PF06381.6; Q11J16_MESSB/35-393; Protein of unknown function (DUF1073 topsan)
SCOP175 264-398 -6.330 10  d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
VFDB 222-386 -5.510 13  VFG2083 (gi:15600886) vasF - hypothetical protein [Vibrio cholerae N16961] (VF0335)
2 gi|11497091|ref|NP_051163.1| hypothetical protein (BB_P02) [Borrelia burgdorferi B31] 230 COG0614 60-143 -6.080 16  [N] COG1334 Uncharacterized flagellar protein FlaG
H.sapiens 88-135 -7.460 31  sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2 (Range: 751-906)
HGM_OVER 21-150 -4.040 11  PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
NEW_HUMAN_DOMAINS 33-137 -5.540 10  tr|E5RG91|E5RG91_HUMAN Uncharacterized protein OS=Homo sapiens GN=VPS37A PE=4 SV=1 (Range: 130-317)
PDB0614 2-216 -6.280 13  4f0d_A mol:protein length:277 Poly [ADP-ribose] polymerase 16
PfamA27U 1-223 -111.000 95  PF07094.6; Q9S056_BORBU/1-223; Protein of unknown function (DUF1357 topsan)
SCOP175 1-151 -6.300 13  d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]}
VFDB 65-143 -6.070 VFG1908 (gi:15791908) flaG - possible flagellar protein [Campylobacter jejuni NCTC 11168] (VF0114)
3 gi|11497092|ref|NP_051164.1| hypothetical protein (BB_P03) [Borrelia burgdorferi B31] 185 COG0614 12-158 -9.130 16  [O] KOG0417 Ubiquitin-protein ligase
H.sapiens 4-128 -9.760 12  sp|Q96B02|UBE2W_HUMAN Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1
HGM_OVER 104-180 -4.400 10  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
NEW_HUMAN_DOMAINS 73-168 -7.700 21  sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3 (Range: 543-652)
PDB0614 1-159 -9.880 12  2bep_A mol:protein length:159 UBIQUITIN-CONJUGATING ENZYME E2-25 KDA
5-128 -10.100 12  2fo3_A mol:protein length:125 Ubiquitin-conjugating enzyme
PfamA27U 1-184 -98.000 57  PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function
SCOP175 12-157 -9.880 12  d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}
VFDB 61-185 -7.030 16  VFG1432 (gi:442376) cssA - CS6 structural subunit A [Escherichia coli] (VF0213)
4 gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31] 254 COG0614 18-174 -7.330 15  [O] KOG0421 Ubiquitin-protein ligase
H.sapiens 28-186 -8.350 sp|Q9Y3C8|UFC1_HUMAN Ubiquitin-fold modifier-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 PE=1 SV=3
HGM_OVER 140-220 -4.600 12  PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;
NEW_HUMAN_DOMAINS 109-209 -7.470 14  tr|Q49A14|Q49A14_HUMAN CCDC108 protein OS=Homo sapiens GN=CCDC108 PE=2 SV=1 (Range: 1-123)
PDB0614 28-186 -8.390 2z6o_A mol:protein length:172 Ufm1-conjugating enzyme 1
PfamA27U 46-247 -88.200 36  PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function
SCOP175 29-191 -8.300 d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 124-241 -4.940 15  VFG1531 (gi:24528060) z5092 - Z5092 protein [Escherichia coli 536]
5 gi|11497094|ref|NP_051166.1| hypothetical protein (BB_P05) [Borrelia burgdorferi B31] 190 COG0614 12-132 -6.360 20  [O] KOG0421 Ubiquitin-protein ligase
H.sapiens 61-190 -7.980 16  sp|Q9UBL3|ASH2L_HUMAN Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo sapiens GN=ASH2L PE=1 SV=1 (Range: 451-628)
HGM_OVER 106-184 -4.740 13  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
NEW_HUMAN_DOMAINS 101-188 -6.260 17  sp|Q96AQ9|F131C_HUMAN Protein FAM131C OS=Homo sapiens GN=FAM131C PE=2 SV=2 (Range: 1-119)
PDB0614 12-145 -10.400 13  3we5_A mol:protein length:173 Ubiquitin conjugating enzyme
PfamA27U 1-189 -107.000 78  PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function
SCOP175 70-183 -8.570 13  d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
VFDB 70-183 -7.870 21  VFG0478 (gi:16764063) fur - transcriptional repressor of iron-responsive genes (Fur family) (ferric uptake regulator) [Salmonella enterica (serovar typhimurium) LT2] (VF0113)
6 gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31] 324 COG0614 13-320 -6.380 11  [S] COG4834 Uncharacterized protein conserved in bacteria
H.sapiens 67-259 -6.810 15  sp|Q6ZMJ4|IL34_HUMAN(removed signalp:1-20) Interleukin-34 OS=Homo sapiens GN=IL34 PE=1 SV=1
HGM_OVER 33-166 -3.290 13  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]
NEW_HUMAN_DOMAINS 67-237 -6.080 17  sp|Q6ZMJ4|IL34_HUMAN Interleukin-34 OS=Homo sapiens GN=IL34 PE=1 SV=1 (Range: 21-190)
PDB0614 113-266 -6.160 2ewr_A mol:protein length:170 hypothetical protein TM1012
PfamA27U 96-320 -8.530 13  PF09950.4; Q46YM7_CUPPJ/97-345; Uncharacterized protein conserved in bacteria (DUF2184 topsan)
SCOP175 169-317 -5.580 12  d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
VFDB 63-279 -4.350 12  VFG2347 (gi:123442783) flgF - flagellar basal-body rod protein FlgF [Yersinia enterocolitica 8081] (VF0394)
7 gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31] 153 COG0614 38-141 -6.260 10  [S] COG1895 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN
H.sapiens 20-104 -8.000 16  sp|Q9P144|CY014_HUMAN Putative uncharacterized protein NCRNA00185 OS=Homo sapiens GN=NCRNA00185 PE=5 SV=1
HGM_OVER 8-61 -5.260 20  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
NEW_HUMAN_DOMAINS 23-92 -6.110 18  sp|Q16206|ENOX2_HUMAN Ecto-NOX disulfide-thiol exchanger 2 OS=Homo sapiens GN=ENOX2 PE=1 SV=2 (Range: 535-610)
PDB0614 36-141 -6.240 10  2hsb_A mol:protein length:126 Hypothetical UPF0332 protein AF0298
PfamA27U 16-78 -36.000 31  PF13029.1; Q6YI80_BORHE/1-68; Domain of unknown function (DUF3890 topsan)
SCOP175 40-107 -5.730 17  d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}
VFDB 21-129 -4.580 15  VFG0305 (gi:15645172) cag25 - cag pathogenicity island protein (cag25) [Helicobacter pylori 26695] (VF0060)
8 gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31] 133 COG0614 10-130 -24.400 [R] COG5614 Bacteriophage head-tail adaptor
H.sapiens 31-129 -7.400 12  sp|P05198|IF2A_HUMAN Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3
HGM_OVER 1-32 -3.410 15  PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;
NEW_HUMAN_DOMAINS 1-97 -7.110 17  sp|Q9Y561|LRP12_HUMAN Low-density lipoprotein receptor-related protein 12 OS=Homo sapiens GN=LRP12 PE=1 SV=1 (Range: 496-615)
PDB0614 32-130 -26.700 2kz4_A mol:protein length:112 Putative head-tail adaptor
PfamA27U 7-133 -90.800 97  PF07405.6; Q9R384_BORBU/1-127; Protein of unknown function (DUF1506 topsan)
SCOP175 97-128 -7.010 18  d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
VFDB 7-129 -4.450 11  VFG0147 (gi:15599036) exoS - exoenzyme S [Pseudomonas aeruginosa PAO1] (VF0096)
9 gi|11497067|ref|NP_051170.1| hypothetical protein (BB_P09) [Borrelia burgdorferi B31] 129 COG0614 41-129 -9.830 [R] COG5005 Mu-like prophage protein gpG
H.sapiens 1-123 -6.410 12  sp|Q96MZ4|CD039_HUMAN Uncharacterized protein C4orf39 OS=Homo sapiens GN=C4orf39 PE=2 SV=1
HGM_OVER 6-129 -6.460 PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
NEW_HUMAN_DOMAINS 1-48 -6.040 16  tr|F5GXK0|F5GXK0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ANK3 PE=4 SV=1 (Range: 101-205)
PDB0614 11-129 -6.030 12  4k6l_F mol:protein length:255 Cytolethal distending toxin subunit B homolog
PfamA27U 1-46 -12.000 21  PF05069.8; Q9ZXL2_9CAUD/3-151; Phage virion morphogenesis family
SCOP175 29-129 -7.300 10  d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]}
VFDB 11-123 -5.470 10  VFG0462 (gi:16764495) csgG - putative transcriptional regulator in curly assembly/transport, 2nd curli operon [Salmonella enterica (serovar typhimurium) LT2] (VF0103)
10 gi|11497068|ref|NP_051171.1| hypothetical protein (BB_P10) [Borrelia burgdorferi B31] 188 COG0614 35-186 -5.820 [S] KOG4448 Uncharacterized conserved protein, contains phosphotyrosine interaction (PI) domain
H.sapiens 1-176 -6.500 sp|Q8N157|AHI1_HUMAN Jouberin OS=Homo sapiens GN=AHI1 PE=1 SV=1 (Range: 301-600)
HGM_OVER 29-117 -4.510 15  PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]
NEW_HUMAN_DOMAINS 1-177 -5.860 sp|Q8N157|AHI1_HUMAN Jouberin OS=Homo sapiens GN=AHI1 PE=1 SV=1 (Range: 339-555)
PDB0614 81-188 -7.930 12  3f3h_A mol:protein length:111 Immunomodulatory protein Ling Zhi-8
PfamA27U 1-181 -112.000 80  PF05561.6; Q0SLB2_BORAP/1-182; Borrelia burgdorferi protein of unknown function (DUF764 topsan)
SCOP175 12-54 -6.510 11  d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
VFDB 20-188 -5.100 13  VFG1577 (gi:23954260) orf43 - hypothetical protein [Escherichia coli 536]
11 gi|11497095|ref|NP_051172.1| hypothetical protein (BB_P11) [Borrelia burgdorferi B31] 370 COG0614 191-305 -5.660 13  [K] KOG1168 Transcription factor ACJ6/BRN-3, contains POU and HOX domains
H.sapiens 145-369 -6.370 19  sp|Q9UK61|CC063_HUMAN Uncharacterized protein C3orf63 OS=Homo sapiens GN=C3orf63 PE=1 SV=3 (Range: 1201-1500)
HGM_OVER 199-367 -2.630 14  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
NEW_HUMAN_DOMAINS 145-369 -6.240 19  sp|Q9UK61|CC063_HUMAN Uncharacterized protein C3orf63 OS=Homo sapiens GN=C3orf63 PE=1 SV=3 (Range: 1205-1474)
PDB0614 162-324 -6.930 11  2xgr_A mol:protein length:252 SPD1 NUCLEASE
PfamA27U 1-361 -136.000 95  PF05619.6; Q9S003_BORBU/1-362; Borrelia burgdorferi protein of unknown function (DUF787 topsan)
SCOP175 167-258 -5.490 11  d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 162-324 -6.930 11  VFG0970 (gi:15674770) mf2 - putative DNase (similar to mitogenic factor), phage associated [Streptococcus pyogenes SF370] (VF0252)
12 gi|11497096|ref|NP_051173.1| hypothetical protein (BB_P12) [Borrelia burgdorferi B31] 142 COG0614 10-131 -5.760 13  [S] COG3358 Uncharacterized conserved protein
H.sapiens 1-141 -6.770 19  sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo sapiens GN=BOP1 PE=1 SV=2 (Range: 1-300)
HGM_OVER 11-124 -3.720 12  PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
NEW_HUMAN_DOMAINS 49-132 -8.590 14  sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A OS=Homo sapiens GN=BAZ2A PE=1 SV=4 (Range: 911-1016)
PDB0614 14-140 -7.420 14  2lf8_A mol:protein length:128 Transcription factor ETV6
PfamA27U 1-140 -109.000 99  PF07316.6; Q9S002_BORBU/1-140; Protein of unknown function (DUF1463 topsan)
SCOP175 6-132 -5.690 18  d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-127 -5.050 17  VFG0561 (gi:16766206) invH - invasion protein [Salmonella enterica (serovar typhimurium) LT2] (VF0116)
13 gi|11497097|ref|NP_051174.1| hypothetical protein (BB_P13) [Borrelia burgdorferi B31] 151 COG0614 1-151 -6.830 10  [U] KOG1688 Golgi proteins involved in ER retention (RER)
H.sapiens 3-125 -6.600 13  sp|O94952|FBX21_HUMAN F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2 (Range: 301-600)
HGM_OVER 2-128 -4.700 10  PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
NEW_HUMAN_DOMAINS 8-73 -6.370 13  sp|Q8NA66|CNBD1_HUMAN Cyclic nucleotide-binding domain-containing protein 1 OS=Homo sapiens GN=CNBD1 PE=2 SV=1 (Range: 1-82)
PDB0614 43-88 -6.860 2qtx_A mol:protein length:71 Uncharacterized protein MJ1435
PfamA27U 3-147 -94.300 44  PF07341.6; Q6ASH9_BORGA/1-163; Protein of unknown function (DUF1473 topsan)
SCOP175 27-88 -7.090 19  d1u3em1 d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
VFDB 23-90 -5.450 16  VFG1727 (gi:26249441) c3606 - Hypothetical protein [Escherichia coli CFT073]
14 gi|11497098|ref|NP_051175.1| hypothetical protein (BB_P14) [Borrelia burgdorferi B31] 78 COG0614 2-71 -6.380 21  [S] COG3195 Uncharacterized protein conserved in bacteria
H.sapiens 27-78 -6.650 18  sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1 (Range: 301-600)
HGM_OVER 42-77 -3.050 PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;
NEW_HUMAN_DOMAINS 16-73 -7.090 17  sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2 (Range: 1385-1445)
PDB0614 2-73 -6.680 20  2o8i_A mol:protein length:165 Hypothetical protein Atu2327
PfamA27U 1-78 -61.800 92  PF07032.6; O87309_BORBG/1-78; Protein of unknown function (DUF1322 topsan)
SCOP175 2-73 -6.680 20  d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]}
VFDB 37-63 -7.140 33  VFG0020 (gi:33594647) ptlI - putative bacterial secretion system protein [Bordetella pertussis Tohama I] (VF0026)
15 gi|11497099|ref|NP_051176.1| hypothetical protein (BB_P15) [Borrelia burgdorferi B31] 424 COG0614 1-416 -21.300 12  [S] COG5280 Phage-related minor tail protein
H.sapiens 9-346 -15.000 12  sp|Q8N1N0|CLC4F_HUMAN C-type lectin domain family 4 member F OS=Homo sapiens GN=CLEC4F PE=2 SV=2
14-401 -12.800 sp|Q9Y250|LZTS1_HUMAN Leucine zipper putative tumor suppressor 1 OS=Homo sapiens GN=LZTS1 PE=1 SV=3
HGM_OVER 18-147 -6.780 11  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
NEW_HUMAN_DOMAINS 2-128 -11.100 16  sp|Q68CZ6|HAUS3_HUMAN HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1 SV=1 (Range: 442-603)
PDB0614 8-131 -11.200 10  1mql_B mol:protein length:221 Hemagglutinin HA2 chain
10-345 -9.680 10  2bsg_A mol:protein length:487 FIBRITIN
16-279 -10.900 4m0m_A mol:protein length:756 Putative uncharacterized protein
PfamA27U 1-421 -41.100 54  PF05537.6; Q5XYW7_BORGA/1-431; Borrelia burgdorferi protein of unknown function (DUF759 topsan)
SCOP175 14-132 -8.350 d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
VFDB 14-401 -13.900 VFG1097 (gi:15641767) VC1764 - hypothetical protein [Vibrio cholerae N16961]
16 gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31] 227 COG0614 181-227 -5.810 23  [R] COG2351 Transthyretin-like protein
H.sapiens 46-219 -6.460 11  sp|Q3SXY7|LRIT3_HUMAN Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3 OS=Homo sapiens GN=LRIT3 PE=2 SV=2 (Range: 1-300)
HGM_OVER 6-224 -3.450 15  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
NEW_HUMAN_DOMAINS 165-227 -6.740 15  tr|F2Z350|F2Z350_HUMAN Uncharacterized protein OS=Homo sapiens GN=C13orf16 PE=4 SV=1 (Range: 1-84)
PDB0614 125-227 -8.230 17  2h0e_A mol:protein length:121 Transthyretin-like protein pucM
PfamA27U 15-227 -124.000 90  PF05632.6; Q5XYW8_BORGA/15-227; Borrelia burgdorferi protein of unknown function (DUF792 topsan)
SCOP175 82-204 -6.890 12  d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}
VFDB 50-217 -4.410 11  VFG2131 (gi:15605291) yscR - type III secretion protein [Chlamydia trachomatis D/UW-3/CX] (VF0344)
17 gi|11497101|ref|NP_051178.1| hypothetical protein (BB_P17) [Borrelia burgdorferi B31] 316 COG0614 26-98 -6.550 21  [S] COG2914 Uncharacterized protein conserved in bacteria
H.sapiens 33-275 -5.870 12  sp|Q02846|GUC2D_HUMAN(removed signalp:1-51) Retinal guanylyl cyclase 1 OS=Homo sapiens GN=GUCY2D PE=1 SV=2 (Range: 451-750)
HGM_OVER 74-204 -3.370 14  PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
NEW_HUMAN_DOMAINS 25-178 -4.560 sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4 (Range: 1-174)
PDB0614 26-98 -6.400 26  2hj1_A mol:protein length:97 Hypothetical protein
PfamA27U 1-314 -136.000 87  PF05113.8; Q5XZ60_BORGA/9-322; Protein of unknown function (DUF693 topsan)
SCOP175 26-87 -5.570 27  d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}
VFDB 35-235 -4.920 12  VFG0420 (gi:16082874) caf1M - putative F1 chaperone protein [Yersinia pestis CO92] (VF0138)
18 gi|11497102|ref|NP_051179.1| hypothetical protein (BB_P18) [Borrelia burgdorferi B31] 181 COG0614 41-160 -6.290 12  [S] COG5375 Uncharacterized protein conserved in bacteria
H.sapiens 32-144 -6.810 13  sp|Q9UBC5|MYO1A_HUMAN Myosin-Ia OS=Homo sapiens GN=MYO1A PE=1 SV=1 (Range: 751-1043)
HGM_OVER 17-113 -3.470 10  PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;
NEW_HUMAN_DOMAINS 46-98 -7.410 17  sp|A6H8M9|CDHR4_HUMAN Cadherin-related family member 4 OS=Homo sapiens GN=CDHR4 PE=2 SV=1 (Range: 17-129)
PDB0614 60-146 -7.290 10  4g2s_A mol:protein length:111 Protein prgH
PfamA27U 1-181 -105.000 96  PF05606.6; Q5XYX0_BORGA/1-181; Borrelia burgdorferi protein of unknown function (DUF777 topsan)
SCOP175 5-178 -6.320 11  d1qfxa_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Aspergillus niger [TaxId: 5061]}
VFDB 61-153 -5.750 14  VFG0591 (gi:16764448) pipC - Pathogenicity island encoded protein: homologous to ipgE of Shigella [Salmonella enterica (serovar typhimurium) LT2]
19 gi|11497069|ref|NP_051180.1| hypothetical protein (BB_P19) [Borrelia burgdorferi B31] 110 COG0614 8-110 -29.500 12  [S] COG4381 Mu-like prophage protein gp46
H.sapiens 1-64 -6.900 11  sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A OS=Homo sapiens GN=BAZ2A PE=1 SV=4 (Range: 1-300)
HGM_OVER 9-107 -3.430 13  PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;
NEW_HUMAN_DOMAINS 1-47 -5.650 17  sp|Q9HA90|CCD48_HUMAN Coiled-coil domain-containing protein 48 OS=Homo sapiens GN=CCDC48 PE=2 SV=2 (Range: 26-90)
PDB0614 1-110 -22.400 14  2ia7_A mol:protein length:134 Tail lysozyme, putative
PfamA27U 1-110 -52.400 81  PF07115.6; Q5XZ58_BORGA/1-110; Protein of unknown function (DUF1371 topsan)
SCOP175 17-110 -20.800 13  d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
VFDB 1-110 -13.900 12  VFG2094 (gi:15600880) VCA0109 - hypothetical protein [Vibrio cholerae N16961] (VF0335)
20 gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31] 291 COG0614 1-140 -5.230 10  [S] COG4382 Mu-like prophage protein gp16
H.sapiens 10-153 -6.900 13  sp|P46020|KPB1_HUMAN Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform OS=Homo sapiens GN=PHKA1 PE=1 SV=2 (Range: 901-1200)
HGM_OVER 154-250 -2.970 12  PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)
NEW_HUMAN_DOMAINS 2-121 -6.110 11  sp|O60244|MED14_HUMAN Mediator of RNA polymerase II transcription subunit 14 OS=Homo sapiens GN=MED14 PE=1 SV=2 (Range: 1215-1394)
PDB0614 44-221 -7.780 15  2jeu_A mol:protein length:209 REGULATORY PROTEIN E2
PfamA27U 1-290 -126.000 90  PF03434.8; Q0SLC5_BORAP/1-291; DUF276 topsan
SCOP175 44-236 -6.320 13  d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain {Human papillomavirus type 16 [TaxId: 333760]}
VFDB 32-239 -5.050 VFG0364 (gi:16122160) ybtA - transcriptional regulator YbtA [Yersinia pestis CO92] (VF0136)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.