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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1693next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31] 407 COG0113 2-407 -72.100 14  [S] COG3567 Uncharacterized protein conserved in bacteria
PDB0113 24-403 -11.100 2jes_A mol:protein length:503 PORTAL PROTEIN
PfamA26U 9-385 -73.900 14  PF06381.6; Q11J16_MESSB/35-393; Protein of unknown function (DUF1073 topsan)
SCOP175 190-353 -5.340 11  d1xg0c_ a.1.1.3 (C:) Phycoerythrin beta subunit {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]}
2 gi|11497091|ref|NP_051163.1| hypothetical protein (BB_P02) [Borrelia burgdorferi B31] 230 COG0113 1-131 -7.670 14  [K] KOG4479 Transcription factor e(y)2
PDB0113 95-211 -7.020 11  3s0t_A mol:protein length:184 CFA/III pilin
PfamA26U 39-221 -84.500 29  PF07094.6; O50932_BORBU/6-195; Protein of unknown function (DUF1357 topsan)
SCOP175 1-151 -5.980 13  d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]}
3 gi|11497092|ref|NP_051164.1| hypothetical protein (BB_P03) [Borrelia burgdorferi B31] 185 COG0113 15-158 -8.460 16  [O] KOG0417 Ubiquitin-protein ligase
PDB0113 1-148 -9.130 15  2e2c_A mol:protein length:156 UBIQUITIN CONJUGATING ENZYME
PfamA26U 1-184 -98.900 57  PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function
SCOP175 15-157 -8.830 12  d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}
4 gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31] 254 COG0113 10-249 -7.710 10  [R] KOG4591 Uncharacterized conserved protein, contains BTB/POZ domain
PDB0113 142-226 -6.510 18  1f80_A mol:protein length:120 HOLO-(ACYL CARRIER PROTEIN) SYNTHASE
PfamA26U 45-247 -86.900 36  PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function
SCOP175 30-190 -5.850 d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}
5 gi|11497094|ref|NP_051166.1| hypothetical protein (BB_P05) [Borrelia burgdorferi B31] 190 COG0113 63-136 -6.570 12  [S] COG5634 Uncharacterized conserved protein
PDB0113 110-180 -7.960 19  2ejm_A mol:protein length:99 Methylcrotonoyl-CoA carboxylase subunit alpha
PfamA26U 1-189 -108.000 78  PF02989.9; Q5XZ91_BORGA/1-188; Lyme disease proteins of unknown function
SCOP175 117-180 -7.520 17  d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
6 gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31] 324 COG0113 34-320 -7.160 11  [S] COG4834 Uncharacterized protein conserved in bacteria
PDB0113 124-253 -6.580 10  1c2y_A mol:protein length:156 PROTEIN (LUMAZINE SYNTHASE)
PfamA26U 63-320 -9.630 13  PF09950.4; Q46YM7_CUPPJ/97-345; Uncharacterized protein conserved in bacteria (DUF2184 topsan)
SCOP175 49-202 -5.370 13  d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]}
7 gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31] 153 COG0113 46-112 -5.630 19  [U] COG5073 Vacuolar import and degradation protein
PDB0113 9-153 -5.910 14  3odp_A mol:protein length:393 putative tagatose-6-phosphate ketose/aldose i
PfamA26U 16-78 -30.600 31  PF13029.1; Q6YI80_BORHE/1-68; Domain of unknown function (DUF3890 topsan)
SCOP175 94-148 -5.880 d1icfi_ g.28.1.1 (I:) Class II MHC associated p41 invariant chain fragment {Human (Homo sapiens) [TaxId: 9606]}
8 gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31] 133 COG0113 67-129 -5.870 14  [J] KOG2916 Translation initiation factor 2, alpha subunit (eIF-2alpha)
PDB0113 35-126 -8.580 12  1rj7_A mol:protein length:163 Ectodysplasin A
PfamA26U 1-133 -103.000 97  PF07405.6; Q9R384_BORBU/1-133; Protein of unknown function (DUF1506 topsan)
SCOP175 21-128 -7.320 10  d1k0ha_ b.106.1.2 (A:) Tail attachment protein gpF3 {Bacteriophage lambda [TaxId: 10710]}
9 gi|11497067|ref|NP_051170.1| hypothetical protein (BB_P09) [Borrelia burgdorferi B31] 129 COG0113 1-60 -11.100 13  [R] COG5005 Mu-like prophage protein gpG
PDB0113 4-129 -6.190 12  2z0z_A mol:protein length:194 Putative uncharacterized protein TTHA1799
PfamA26U 16-51 -13.400 13  PF04883.7; Q0AG21_NITEC/10-156; Bacteriophage protein of unknown function (DUF646 topsan)
SCOP175 1-41 -6.480 d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}
10 gi|11497068|ref|NP_051171.1| hypothetical protein (BB_P10) [Borrelia burgdorferi B31] 188 COG0113 1-188 -5.160 [S] KOG2490 Predicted membrane protein
PDB0113 114-186 -6.940 12  2doq_D mol:protein length:94 SFI1p
PfamA26U 1-181 -116.000 80  PF05561.6; Q0SLB2_BORAP/1-182; Borrelia burgdorferi protein of unknown function (DUF764 topsan)
SCOP175 107-151 -6.190 15  d2jn9a1 b.45.3.1 (A:2-97) Uncharacterized protein YkvR {Bacillus subtilis [TaxId: 1423]}
11 gi|11497095|ref|NP_051172.1| hypothetical protein (BB_P11) [Borrelia burgdorferi B31] 370 COG0113 203-370 -5.380 12  [O] COG3175 Cytochrome oxidase assembly factor
PDB0113 192-264 -6.600 11  1cc5_A mol:protein length:83 CYTOCHROME C5
PfamA26U 1-361 -145.000 95  PF05619.6; Q9S003_BORBU/1-362; Borrelia burgdorferi protein of unknown function (DUF787 topsan)
SCOP175 192-264 -6.600 11  d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}
12 gi|11497096|ref|NP_051173.1| hypothetical protein (BB_P12) [Borrelia burgdorferi B31] 142 COG0113 10-131 -5.920 13  [S] COG3358 Uncharacterized conserved protein
PDB0113 49-106 -7.450 31  2k89_A mol:protein length:80 Phospholipase A-2-activating protein
PfamA26U 1-140 -112.000 99  PF07316.6; Q9S002_BORBU/8-147; Protein of unknown function (DUF1463 topsan)
SCOP175 8-141 -5.470 10  d1b35b_ b.121.4.1 (B:) Insect picorna-like virus coat proteins {Cricket paralysis virus [TaxId: 12136]}
13 gi|11497097|ref|NP_051174.1| hypothetical protein (BB_P13) [Borrelia burgdorferi B31] 151 COG0113 1-151 -7.050 10  [U] KOG1688 Golgi proteins involved in ER retention (RER)
PDB0113 49-151 -6.280 17  2lez_A mol:protein length:145 Secreted effector protein pipB2
PfamA26U 3-149 -97.900 44  PF07341.6; Q6ASH9_BORGA/1-163; Protein of unknown function (DUF1473 topsan)
SCOP175 27-88 -5.600 19  d1u3em1 d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
14 gi|11497098|ref|NP_051175.1| hypothetical protein (BB_P14) [Borrelia burgdorferi B31] 78 COG0113 2-75 -5.310 11  [E] KOG0564 5,10-methylenetetrahydrofolate reductase
PDB0113 26-74 -5.790 14  2wsc_E mol:protein length:143 PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, C
PfamA26U 1-78 -66.900 92  PF07032.6; O87309_BORBU/1-78; Protein of unknown function (DUF1322 topsan)
SCOP175 26-62 -5.830 10  d1jb0e_ b.34.4.2 (E:) Photosystem I accessory protein E (PsaE) {Synechococcus elongatus [TaxId: 32046]}
15 gi|11497099|ref|NP_051176.1| hypothetical protein (BB_P15) [Borrelia burgdorferi B31] 424 COG0113 1-315 -14.300 [D] KOG4438 Centromere-associated protein NUF2
1-408 -11.400 10  [S] COG5280 Phage-related minor tail protein
13-364 -13.600 12  [S] KOG4687 Uncharacterized coiled-coil protein
PDB0113 1-263 -11.100 1jch_A mol:protein length:551 COLICIN E3
1-380 -10.300 2bsg_A mol:protein length:487 FIBRITIN
6-305 -10.700 10  1y1u_A mol:protein length:585 Signal transducer and activator of transcript
PfamA26U 1-422 -41.700 57  PF05537.6; Q5XYW7_BORGA/1-431; Borrelia burgdorferi protein of unknown function (DUF759 topsan)
SCOP175 1-111 -6.370 13  d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
16 gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31] 227 COG0113 180-227 -5.260 22  [R] COG2351 Transthyretin-like protein
PDB0113 19-227 -7.100 2f1x_A mol:protein length:161 HAUSP/USP7
PfamA26U 15-227 -132.000 90  PF05632.6; Q5XYW8_BORGA/15-227; Borrelia burgdorferi protein of unknown function (DUF792 topsan)
SCOP175 45-210 -5.340 15  d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
17 gi|11497101|ref|NP_051178.1| hypothetical protein (BB_P17) [Borrelia burgdorferi B31] 316 COG0113 4-305 -5.380 11  [F] KOG1567 Ribonucleotide reductase, beta subunit
PDB0113 151-305 -6.350 11  1rqc_A mol:protein length:185 formylmethionine deformylase
PfamA26U 1-312 -125.000 72  PF05113.8; Q5XYW9_BORGA/1-313; Protein of unknown function (DUF693 topsan)
SCOP175 151-296 -6.090 12  d1rl4a_ d.167.1.1 (A:) Peptide deformylase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
18 gi|11497102|ref|NP_051179.1| hypothetical protein (BB_P18) [Borrelia burgdorferi B31] 181 COG0113 67-160 -5.430 13  [S] COG5375 Uncharacterized protein conserved in bacteria
PDB0113 5-178 -6.800 10  1qfx_A mol:protein length:460 PROTEIN (PH 2.5 ACID PHOSPHATASE)
PfamA26U 3-171 -87.400 32  PF05606.6; O50948_BORBU/2-181; Borrelia burgdorferi protein of unknown function (DUF777 topsan)
SCOP175 5-178 -7.160 11  d1qfxa_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Aspergillus niger [TaxId: 5061]}
19 gi|11497069|ref|NP_051180.1| hypothetical protein (BB_P19) [Borrelia burgdorferi B31] 110 COG0113 1-110 -13.000 16  [S] COG4381 Mu-like prophage protein gp46
PDB0113 1-110 -9.550 11  2ia7_A mol:protein length:134 Tail lysozyme, putative
PfamA26U 1-110 -39.000 81  PF07115.6; Q5XZ58_BORGA/1-110; Protein of unknown function (DUF1371 topsan)
SCOP175 17-110 -8.890 13  d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
20 gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31] 291 COG0113 3-142 -5.930 17  [C] COG1017 Hemoglobin-like flavoprotein
PDB0113 44-221 -7.760 15  2jeu_A mol:protein length:209 REGULATORY PROTEIN E2
PfamA26U 1-291 -134.000 90  PF03434.8; Q0SLC5_BORAP/1-291; DUF276 topsan
SCOP175 44-235 -6.500 13  d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain {Human papillomavirus type 16 [TaxId: 333760]}


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.