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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 55674next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1 338 PfamA26U 1-179 -97.800 79  PF00129.13; 1A01_SAGOE/25-203; Class I Histocompatibility antigen, domains alpha 1 and 2
43-311 -15.100 13  PF02124.10; Q8JMQ7_9ALPH/202-414; Marek`s disease glycoprotein A
190-271 -32.000 25  PF07654.10; IGHG3_MOUSE/234-320; Immunoglobulin C1-set domain
2 sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3 422 PfamA26U 38-418 -31.300 11  PF10321.4; Q9N526_CAEEL/3-311; Serpentine type 7TM GPCR chemoreceptor Srt
53-400 -94.900 36  PF00001.16; HRH2_CANFA/35-288; 7 transmembrane receptor (rhodopsin family)
3 sp|Q15758|AAAT_HUMAN Neutral amino acid transporter B(0) OS=Homo sapiens GN=SLC1A5 PE=1 SV=2 541 PfamA26U 54-485 -68.900 17  PF00375.13; A4CFF6_9GAMM/3-377; Sodium:dicarboxylate symporter family
4 sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 599 PfamA26U 7-37 -9.720 77  PF04068.10; A3FQC8_CRYPV/19-50; Possible Fer4-like domain in RNase L inhibitor, RLI
70-525 -14.500 PF13175.1; A9A6W0_METM6/4-391; AAA ATPase domain
94-597 -14.200 PF07088.6; GVPD1_HALSA/23-536; GvpD gas vesicle protein
117-245 -24.700 15  PF00005.22; YTFR_ECOLI/49-174; ABC transporter
117-542 -23.000 10  PF09818.4; Q2C6W1_9GAMM/1-438; Predicted ATPase of the ABC class
5 sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2 87 PfamA26U 3-86 -58.100 46  PF00887.14; ACBP6_ARATH/3-87; Acyl CoA binding protein
6 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 1-300) 300 PfamA26U 33-274 -20.400 PF11794.3; A3K7D3_9RHOB/13-275; 4-hydroxyphenylacetate 3-hydroxylase N terminal
7 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 151-450) 300 PfamA26U 1-124 -16.100 12  PF11794.3; A3K7D3_9RHOB/13-275; 4-hydroxyphenylacetate 3-hydroxylase N terminal
144-300 -29.300 17  PF00441.19; O33331_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
8 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 301-600) 300 PfamA26U 1-166 -34.200 19  PF00441.19; O33331_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
210-300 -21.900 15  PF01756.14; O62140_CAEEL/484-669; Acyl-CoA oxidase
9 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 451-700) 250 PfamA26U 60-246 -69.400 18  PF01756.14; O62140_CAEEL/484-669; Acyl-CoA oxidase
10 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 1-300) 300 PfamA26U 2-137 -51.700 23  PF01562.14; ATS3_HUMAN/42-201; Reprolysin family propeptide
185-300 -55.800 24  PF01421.14; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
11 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 151-450) 300 PfamA26U 35-233 -78.900 24  PF01421.14; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
250-300 -23.000 45  PF00200.18; ADA32_HUMAN/400-477; Disintegrin
12 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 301-600) 300 PfamA26U 1-83 -29.600 22  PF01421.14; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
100-175 -30.300 42  PF00200.18; ADA32_HUMAN/400-477; Disintegrin
177-294 -37.300 25  PF08516.7; ADAM2_MACFA/473-589; ADAM cysteine-rich
13 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 451-750) 300 PfamA26U 1-254 -11.600 15  PF07243.6; GP_PTPV/282-808; Phlebovirus glycoprotein G1
27-142 -26.400 25  PF08516.7; ADAM2_MACFA/473-589; ADAM cysteine-rich
38-241 -13.200 12  PF06247.6; Q968Z9_9APIC/23-221; Plasmodium ookinete surface protein Pvs28
137-300 -11.600 16  PF13908.1; Q6DC69_DANRE/23-231; Wnt and FGF inhibitory regulator
152-206 -13.900 21  PF01414.14; JAG2_RAT/132-194; Delta serrate ligand
14 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 601-900) 300 PfamA26U 4-48 -11.600 20  PF04885.8; Q40579_TOBAC/7-146; Stigma-specific protein, Stig1
31-299 -11.000 10  PF00513.13; VL2_HPV56/5-455; Late Protein L2
82-300 -14.100 PF05934.6; CLCC1_HUMAN/3-551; Mid-1-related chloride channel (MCLC)
15 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 751-930) 180 PfamA26U 1-180 -18.200 PF11725.3; A8E3E7_PSEVI/1-1719; Pathogenicity factor
16 sp|P11766|ADHX_HUMAN Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4 374 PfamA26U 32-160 -35.300 23  PF08240.7; Q92UI4_RHIME/24-130; Alcohol dehydrogenase GroES-like domain
202-333 -27.400 21  PF00107.21; ADH_SULSO/182-311; Zinc-binding dehydrogenase
17 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300) 300 PfamA26U 1-207 -13.600 11  PF05782.6; ECM1_HUMAN/1-540; Extracellular matrix protein 1 (ECM1)
2-300 -13.300 PF03344.10; A7KII2_SALSA/6-727; Daxx Family
18 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 151-450) 300 PfamA26U 5-295 -11.400 12  PF11725.3; A8E3E7_PSEVI/1-1719; Pathogenicity factor
9-213 -11.800 PF05782.6; ECM1_HUMAN/1-540; Extracellular matrix protein 1 (ECM1)
19 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600) 300 PfamA26U 62-274 -16.100 10  PF05783.6; Q561T1_DANRE/5-493; Dynein light intermediate chain (DLIC)
108-268 -54.400 28  PF00071.17; RAB9A_CANFA/9-174; Ras family
20 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 451-750) 300 PfamA26U 1-118 -44.600 25  PF00071.17; RAB9A_CANFA/9-174; Ras family
183-284 -9.890 10  PF00373.13; Q4T8R8_TETNG/88-414; FERM central domain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.