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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 PDB0516 3-339 -18.400 12  4fcy_A mol:protein length:529 Transposase
68-296 -20.600 15  3jca_A mol:protein length:265 Integrase
118-244 -22.700 16  1asu_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE
120-292 -21.200 18  5cz1_A mol:protein length:169 integrase
120-332 -18.800 13  1c0m_A mol:protein length:238 PROTEIN (INTEGRASE)
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 PDB0516 21-227 -15.000 15  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
65-254 -93.900 47  5bq5_A mol:protein length:189 Insertion sequence IS5376 putative ATP-bindin
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 PDB0516 1-130 -60.800 98  1n5b_A mol:protein length:132 YOPE regulator
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 PDB0516 18-85 -18.200 100  1l2w_I mol:protein length:69 Outer membrane virulence protein yopE
90-219 -68.100 100  1hy5_A mol:protein length:136 YERSINIA PESTIS VIRULENCE PROTEIN YOPE
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 PDB0516 30-76 -6.300 2m51_A mol:protein length:62 Ras GTPase-activating protein 1
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 PDB0516 2-94 -62.300 30  3kxe_A mol:protein length:110 Toxin protein parE-1
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 PDB0516 1-80 -46.200 30  3kxe_C mol:protein length:88 Antitoxin protein parD-1
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 PDB0516 1-278 -41.200 19  4umk_A mol:protein length:240 PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB
72-257 -43.200 21  1vz0_A mol:protein length:230 CHROMOSOME PARTITIONING PROTEIN PARB
145-317 -51.300 41  3mky_B mol:protein length:189 Protein sopB
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 PDB0516 1-387 -78.800 21  3ez2_A mol:protein length:398 Plasmid partition protein A
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 PDB0516 2-49 -6.280 15  3phu_A mol:protein length:219 RNA-directed RNA polymerase L
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 PDB0516 1-152 -17.500 13  4fcy_A mol:protein length:529 Transposase
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 PDB0516 9-104 -37.300 20  2jn6_A mol:protein length:97 Protein Cgl2762
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 PDB0516 15-181 -7.670 13  4ubq_A mol:protein length:229 Beta-lactamase
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 PDB0516 122-315 -48.400 13  1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 PDB0516 1-132 -60.000 98  2bho_A mol:protein length:130 CHAPERONE PROTEIN SYCT
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 PDB0516 23-124 -6.310 3jb9_h mol:protein length:265 Pre-mRNA-splicing factor cwf15
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 PDB0516 11-94 -10.200 16  2cpj_A mol:protein length:99 Non-POU domain-containing octamer-binding pro
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 PDB0516 1-409 -75.900 94  1g9u_A mol:protein length:454 OUTER PROTEIN YOPM
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 PDB0516 72-302 -12.500 4e40_A mol:protein length:252 Putative uncharacterized protein
100-297 -14.000 4gkw_A mol:protein length:167 Spindle assembly abnormal protein 6
159-298 -18.400 10  3tul_A mol:protein length:158 Cell invasion protein sipB
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 PDB0516 47-264 -52.100 46  3wxx_B mol:protein length:219 AopB


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.