current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 2581< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 VFG042424(gi:218921797) (afaB-I) chaperone AfaB [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 247 VFDB 1-247 -99.300 98  VFG000943(gi:13241932) (draB) chaperone protein DraB [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
22 VFG042442(gi:13236679) (afaB-VIII) chaperone protein AfaB-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 255 VFDB 1-254 -95.700 59  VFG000850(gi:531397) (aggD) chaperone [AAFs (VF0214)] [Escherichia coli 17-2]
23 VFG042432(gi:639969) (afaC-III) AFA-III usher protein [Afimbrial adhesin, AFA-III (AI012)] [Escherichia coli str. A30] 859 VFDB 1-859 -215.000 99  VFG000944(gi:13241933) (draC) usher protein DraC [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
24 VFG042425(gi:218921798) (afaC-I) usher AfaC [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 860 VFDB 1-860 -208.000 98  VFG000944(gi:13241933) (draC) usher protein DraC [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
25 VFG042436(gi:5685850) (afaC-VII) AfaC-VII usher protein [Afimbrial adhesin, AFA-VII (AI014)] [Escherichia coli str. 239 KH 89] 838 VFDB 2-838 -202.000 75  VFG000944(gi:13241933) (draC) usher protein DraC [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
26 VFG042443(gi:5685862) (afaC-VIII) AfaC-VIII usher protein [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 861 VFDB 12-861 -198.000 70  VFG000853(gi:4689215) (aafC) aggregative adherence fimbria II usher protein AafC [AAFs (VF0214)] [Escherichia coli str. 042]
27 VFG042426(gi:218921799) (afaD) AfaD [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 147 VFDB 1-147 -85.300 99  VFG000945(gi:13241934) (draD) DraD, periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
28 VFG042437(gi:5523848) (afaD-VII) AfaD-VII [Afimbrial adhesin, AFA-VII (AI014)] [Escherichia coli str. 239 KH 89] 150 VFDB 1-143 -76.700 48  VFG042444(gi:5523844) (afaD-VIII) AfaD-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89]
29 VFG042444(gi:5523844) (afaD-VIII) AfaD-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 139 VFDB 1-138 -76.700 48  VFG042437(gi:5523848) (afaD-VII) AfaD-VII [Afimbrial adhesin, AFA-VII (AI014)] [Escherichia coli str. 239 KH 89]
30 VFG001426(gi:218921800) (afaE-I) AFA-I adhesin [Afa/Dr family (VF0212)] [Escherichia coli O25b:H4 str. FV9863] 161 VFDB 1-161 -97.300 38  VFG001425(gi:639970) (afaE-III) AFA-III adhesin [Afa/Dr family (VF0212)] [Escherichia coli str. A30]
31 VFG042428(gi:2196861) (afaE-II) afimbrial adhesin AfaE-II protein [Afimbrial adhesin, AFA-II, chloramphenicol-resistant adhesin (AI011)] [Escherichia coli str. A22] 164 VFDB 1-164 -87.900 31  VFG001425(gi:639970) (afaE-III) AFA-III adhesin [Afa/Dr family (VF0212)] [Escherichia coli str. A30]
32 VFG001425(gi:639970) (afaE-III) AFA-III adhesin [Afa/Dr family (VF0212)] [Escherichia coli str. A30] 160 VFDB 1-160 -108.000 98  VFG001428(gi:13241936) (draE) adhesin protein DraE [Afa/Dr family (VF0212)] [Escherichia coli O75:K5:H- str. IH11128]
33 VFG042435(gi:2196863) (afaE-V) AfaE-V adhesin [Afimbrial adhesin, AFA-V (AI013)] [Escherichia coli str. AL 851] 160 VFDB 1-160 -105.000 51  VFG001425(gi:639970) (afaE-III) AFA-III adhesin [Afa/Dr family (VF0212)] [Escherichia coli str. A30]
34 VFG042439(gi:5523850) (afaE-VII) adhesin AfaE-VII [Afimbrial adhesin, AFA-VII (AI014)] [Escherichia coli str. 239 KH 89] 177 VFDB 10-153 -9.760 13  VFG000851(gi:2576413) (aafA) major fimbrial subunit of aggregative adherence fimbria II AafA [AAFs (VF0214)] [Escherichia coli str. 042]
35 VFG042445(gi:5523845) (afaE-VIII) AfaE-VIII adhesin [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 170 VFDB 2-166 -10.400 16  VFG000418(gi:16082876) (caf1) putative F1 capsule antigen [F1 antigen (VF0138)] [Yersinia pestis CO92]
36 VFG042429(gi:639968) (afaF-III) AfaF-III [Afimbrial adhesin, AFA-III (AI012)] [Escherichia coli str. A30] 85 VFDB 1-75 -36.200 90  VFG042447(gi:145699) (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
37 VFG042440(gi:13236677) (afaF-VII) AfaF-VII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 62 VFDB 2-61 -27.500 68  VFG042447(gi:145699) (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
38 VFG042438(gi:5523849) (afaG-VII) AfaG-VII [Afimbrial adhesin, AFA-VII (AI014)] [Escherichia coli str. 239 KH 89] 138 VFDB 28-131 -6.260 15  VFG002443(gi:53722546) (bopE) Type III secretion system secreted effector, G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
39 VFG000855(gi:22001089) (agg3A) adhesin protein [AAFs (VF0214)] [Escherichia coli 55989] 165 VFDB 1-164 -66.200 20  VFG000851(gi:2576413) (aafA) major fimbrial subunit of aggregative adherence fimbria II AafA [AAFs (VF0214)] [Escherichia coli str. 042]
40 VFG000856(gi:22001088) (agg3B) invasin protein [AAFs (VF0214)] [Escherichia coli 55989] 146 VFDB 2-143 -73.700 57  VFG000854(gi:4689214) (aafB) invasin homolog AafB [AAFs (VF0214)] [Escherichia coli str. 042]


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;