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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG000851(gi:2576413) (aafA) major fimbrial subunit of aggregative adherence fimbria II AafA [AAFs (VF0214)] [Escherichia coli str. 042] 160 VFDB 1-157 -67.500 23  VFG000847(gi:531400) (aggA) fimbrial major subunit [AAFs (VF0214)] [Escherichia coli 17-2]
2 VFG000854(gi:4689214) (aafB) invasin homolog AafB [AAFs (VF0214)] [Escherichia coli str. 042] 146 VFDB 1-143 -73.700 57  VFG000856(gi:22001088) (agg3B) invasin protein [AAFs (VF0214)] [Escherichia coli 55989]
3 VFG000853(gi:4689215) (aafC) aggregative adherence fimbria II usher protein AafC [AAFs (VF0214)] [Escherichia coli str. 042] 856 VFDB 3-856 -203.000 82  VFG042425(gi:218921798) (afaC-I) usher AfaC [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863]
4 VFG000852(gi:4596718) (aafD) chaperone protein AafD [AAFs (VF0214)] [Escherichia coli str. 042] 241 VFDB 6-241 -97.700 26  VFG000455(gi:16766925) (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
5 VFG000865(gi:387604907) (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042] 116 VFDB 1-69 -8.350 18  VFG000435(gi:17233483) (pefA) plasmid-encoded fimbriae major subunit PefA [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
6 VFG044024(gi:169639785) (ACA60977) alpha-toxin [alpha-toxin (septicum) (VF0416)] [Clostridium septicum str. NH2] 443 VFDB 2-420 -37.500 11  VFG002291(gi:209947607) (ext) epsilon-toxin [epsilon-toxin (VF0380)] [Clostridium perfringens str. NCTC 8533B4D]
7 VFG000110(gi:15641470) (ace) accessory cholera enterotoxin [Ace (VF0130)] [Vibrio cholerae O1 biovar El Tor str. N16961] 97 VFDB 4-97 -6.350 VFG041330(gi:52842615) (lem23) Dot/Icm type IV secretion system effector Lem23 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
8 VFG002166(gi:29375675) (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] 674 VFDB 1-672 -42.400 17  VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555]
9 VFG000103(gi:15640861) (acfA) accessory colonization factor AcfA [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 215 VFDB 1-215 -73.500 14  VFG000354(gi:16123096) (ail) attachment invasion locus protein [Ail (VF0132)] [Yersinia pestis CO92]
10 VFG000104(gi:15640857) (acfB) accessory colonization factor AcfB [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 626 VFDB 3-626 -98.400 22  VFG000088(gi:15640842) (tcpI) toxin co-regulated pilus biosynthesis protein I [TCP (VF0126)] [Vibrio cholerae O1 biovar El Tor str. N16961]
11 VFG000105(gi:15640858) (acfC) accessory colonization factor AcfC [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 256 VFDB 7-256 -97.000 49  VFG000839(gi:15801498) (paa) outer membrane adhesin Paa [Paa (VF0194)] [Escherichia coli O157:H7 str. EDL933]
12 VFG000106(gi:15640862) (acfD) accessory colonization factor AcfD [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 1520 VFDB 5-724 -12.900 10  VFG002548(gi:53720398) (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
69-726 -13.900 10  VFG043508(gi:29374740) (fss1) Enterococcus faecalis surface protein Fss1, fibrinogen binding protein [Fibrinogen binding protein (AI271)] [Enterococcus faecalis V583]
13 VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] 721 VFDB 1-711 -70.500 27  VFG001291(gi:21284341) (cna) collagen adhesin precursor [CNA (VF0005)] [Staphylococcus aureus subsp. aureus MW2]
14 VFG005770(gi:22536832) (acpC) acyl carrier protein AcpC [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R] 101 VFDB 14-94 -36.800 28  VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]
15 VFG011429(gi:17987394) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 93 VFDB 1-78 -44.800 32  VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]
16 VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 78 VFDB 1-77 -45.800 23  VFG002445(gi:53722548) (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
17 VFG000068(gi:16802250) (actA) actin-assembly inducing protein precursor [ActA (VF0066)] [Listeria monocytogenes EGD-e] 639 VFDB 23-424 -17.800 11  VFG000337(gi:16272928) (iga1) immunoglobin A1 protease [IgA1 protease (VF0045)] [Haemophilus influenzae Rd KW20]
29-612 -10.600 VFG000261(gi:15676598) (iga) IgA-specific serine endopeptidase [IgA1 protease (VF0080)] [Neisseria meningitidis MC58]
18 VFG002420(gi:21281752) (adsA) Adenosine synthase A [AdsA (VF0422)] [Streptococcus pyogenes MGAS315] 772 VFDB 122-417 -15.100 16  VFG000680(gi:6470207) (capA) CapA, required for Poly-gamma-glutamate transport [Capsule (VF0141)] [Bacillus anthracis]
19 VFG042423(gi:218921796) (afaA) fimbrial major subunit AfaA [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 101 VFDB 1-101 -57.600 99  VFG000942(gi:13241931) (draA) cytoplamic protein DraA [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
20 VFG042441(gi:13236678) (afaA-VIII) AfaA-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 127 VFDB 11-109 -48.900 38  VFG000881 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.