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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG000851(gi:2576413) (aafA) major fimbrial subunit of aggregative adherence fimbria II AafA [AAFs (VF0214)] [Escherichia coli str. 042] 160 JCSG0516 1-158 -15.400 12  TT7209A NP_744509.1 404835 Selected-2009-08-14
2 VFG000854(gi:4689214) (aafB) invasin homolog AafB [AAFs (VF0214)] [Escherichia coli str. 042] 146 JCSG0516 1-146 -12.600 SP13439A ZP_01961388.1 406999 Purified-2010-09-29
3 VFG000853(gi:4689215) (aafC) aggregative adherence fimbria II usher protein AafC [AAFs (VF0214)] [Escherichia coli str. 042] 856 JCSG0516 54-856 -9.960 10  SP14815A NP_253179.1 413182 Selected-2009-11-12
4 VFG000852(gi:4596718) (aafD) chaperone protein AafD [AAFs (VF0214)] [Escherichia coli str. 042] 241 JCSG0516 8-240 -48.400 15  SP17313A YP_001713378.1 406449 Selected-2009-11-12
5 VFG000865(gi:387604907) (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042] 116 JCSG0516 1-35 -10.400 17  SP16857A ZP_02037157.1 407190 Purified-2010-09-29
1-102 -9.960 14  SP13691H YP_213000.1 407830 Purified-2010-09-29
6 VFG044024(gi:169639785) (ACA60977) alpha-toxin [alpha-toxin (septicum) (VF0416)] [Clostridium septicum str. NH2] 443 JCSG0516 142-324 -35.600 12  SP17047A ZP_02073170.1 409566 Purified-2010-09-29
7 VFG000110(gi:15641470) (ace) accessory cholera enterotoxin [Ace (VF0130)] [Vibrio cholerae O1 biovar El Tor str. N16961] 97 JCSG0516 40-90 -5.640 SP18048A NP_372942.2 413657 Purified-2010-11-20
8 VFG002166(gi:29375675) (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] 674 JCSG0516 26-648 -29.200 SP17586C NP_439153.1 411588 Selected-2009-11-12
9 VFG000103(gi:15640861) (acfA) accessory colonization factor AcfA [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 215 JCSG0516 1-215 -64.200 11  SP19450B YP_096648.1 412277 Purified-2010-09-29
10 VFG000104(gi:15640857) (acfB) accessory colonization factor AcfB [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 626 JCSG0516 1-626 -75.500 21  TM0023 TM0023 281904 Purified-2001-08-24
11 VFG000105(gi:15640858) (acfC) accessory colonization factor AcfC [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 256 JCSG0516 7-256 -97.000 49  SP5482A NP_287515.1 411011 Selected-2009-11-12
12 VFG000106(gi:15640862) (acfD) accessory colonization factor AcfD [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 1520 JCSG0516 1-706 -12.200 SP14267E ZP_02043803.1 406535 Selected-2009-11-12
337-1520 -54.400 12  SP19122A NP_249263.1 413334 Selected-2009-11-12
13 VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] 721 JCSG0516 23-720 -21.300 10  SP17977A NP_373026.1 413581 Selected-2009-11-12
14 VFG005770(gi:22536832) (acpC) acyl carrier protein AcpC [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R] 101 JCSG0516 6-95 -41.800 35  FM11900A YP_298135.1 378261 Purified-2007-07-30
15 VFG011429(gi:17987394) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 93 JCSG0516 1-78 -44.400 32  TM0662 TM0662 282534 Purified-2001-02-22
16 VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 78 JCSG0516 1-78 -50.800 53  TM0662 TM0662 282534 Purified-2001-02-22
17 VFG000068(gi:16802250) (actA) actin-assembly inducing protein precursor [ActA (VF0066)] [Listeria monocytogenes EGD-e] 639 JCSG0516 23-424 -17.800 11  SP17586C NP_439153.1 411588 Selected-2009-11-12
405-639 -9.650 11  EL13177O YP_809644.1 423511 Selected-2011-05-25
479-639 -13.200 SP2600AD YP_794564.1 411897 Selected-2009-11-12
18 VFG002420(gi:21281752) (adsA) Adenosine synthase A [AdsA (VF0422)] [Streptococcus pyogenes MGAS315] 772 JCSG0516 52-378 -10.200 11  SP16761I ZP_02038738.1 407154 Selected-2009-11-12
110-772 -91.000 18  SP18790A YP_001271626.1 411934 Selected-2009-11-12
131-645 -99.200 26  TM1878 TM1878 283730 Purified-2001-12-06
19 VFG042423(gi:218921796) (afaA) fimbrial major subunit AfaA [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 101 JCSG0516 23-78 -8.090 12  TT10262A NP_822594.1 403881 Selected-2009-08-14
20 VFG042441(gi:13236678) (afaA-VIII) AfaA-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 127 JCSG0516 37-95 -7.570 11  TT10262A NP_822594.1 403881 Selected-2009-08-14


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.