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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 PDB0516 10-39 -7.340 26  2jxc_B mol:protein length:45 Stonin-2
2 TM0002 TM0002 281883 Purified-2001-08-29 41 PDB0516 8-29 -4.300 31  2cmy_B mol:protein length:34 VERONICA HEDERIFOLIA TRYPSIN INHIBITOR
3 TM0003 TM0003 281884 Purified-2001-12-06 40 PDB0516 1-24 -4.320 12  1vry_A mol:protein length:76 Glycine receptor alpha-1 chain
4 TM0004 TM0004 281885 Purified-2004-07-19 31 PDB0516 4-31 -4.750 10  4kg0_A mol:protein length:169 Protein neuralized
5 TM0005 TM0005 281886 Purified-2001-01-30 650 PDB0516 1-647 -147.000 34  4b3f_X mol:protein length:646 DNA-BINDING PROTEIN SMUBP-2
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 PDB0516 1-345 -115.000 100  2zad_A mol:protein length:345 Muconate cycloisomerase
7 TM0007 TM0007 281888 Purified-2004-07-19 438 PDB0516 10-364 -20.200 11  3kd4_A mol:protein length:506 Putative protease
136-397 -29.400 18  3isr_A mol:protein length:293 Transglutaminase-like enzymes, putative cyste
242-403 -31.500 14  4xz7_A mol:protein length:399 Putative uncharacterized protein
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 PDB0516 1-222 -81.200 23  4cog_A mol:protein length:215 KYNURENINE FORMAMIDASE
9 TM0009 TM0009 281890 Purified-2001-02-14 142 PDB0516 1-141 -57.200 31  1vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate pro
10 TM0010 TM0010 281891 Purified-2005-03-03 607 PDB0516 3-103 -26.800 29  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
103-536 -102.000 45  2fug_1 mol:protein length:438 NADH-quinone oxidoreductase chain 1
540-594 -19.700 25  2vkr_A mol:protein length:103 ZINC-CONTAINING FERREDOXIN
11 TM0011 TM0011 281892 Purified-2004-02-02 128 PDB0516 30-128 -38.400 28  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
12 TM0012 TM0012 281893 Purified-2001-08-29 176 PDB0516 16-174 -79.100 27  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
13 TM0013 TM0013 281894 Purified-2001-08-24 253 PDB0516 1-242 -75.400 14  4fek_A mol:protein length:262 Putative diflavin flavoprotein A 5
14 TM0014 TM0014 281895 Purified-2001-01-30 278 PDB0516 4-277 -52.600 19  2ch7_A mol:protein length:309 METHYL-ACCEPTING CHEMOTAXIS PROTEIN
41-253 -67.100 100  3g67_A mol:protein length:213 Methyl-accepting chemotaxis protein
15 TM0015 TM0015 281896 PDB-2007-09-14 192 PDB0516 1-192 -99.700 100  2raa_A mol:protein length:204 Pyruvate synthase subunit porC
16 TM0016 TM0016 281897 Purified-2001-08-24 101 PDB0516 2-98 -36.900 40  5c4i_B mol:protein length:315 Oxalate oxidoreductase subunit delta
17 TM0017 TM0017 281898 Purified-2003-03-05 394 PDB0516 6-393 -122.000 34  5c4i_A mol:protein length:395 Oxalate oxidoreductase subunit alpha
18 TM0018 TM0018 281899 Purified-2001-08-24 324 PDB0516 6-321 -105.000 39  5c4i_C mol:protein length:314 Oxalate oxidoreductase subunit beta
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 PDB0516 4-256 -97.200 44  3ged_A mol:protein length:247 Short-chain dehydrogenase/reductase SDR
20 TM0020 TM0020 281901 Purified-2001-08-24 127 PDB0516 1-127 -61.400 27  5a40_A mol:protein length:128 PUTATIVE FLUORIDE ION TRANSPORTER CRCB


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.