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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 13760next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]} 116 VFDB 10-116 -4.440 VFG045601(gi:52843069) (lpg2874) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
2 d2gkma_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]} 127 VFDB 3-123 -4.340 14  VFG000808(gi:15804225) (espH) Type III secretion system effector EspH, RhoGEF Inhibitor [EspH (VF0197)] [Escherichia coli O157:H7 str. EDL933]
3 d2qrwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]} 126 VFDB 57-119 -4.790 17  VFG042070(gi:33593233) (btrU/bspR) Bordetella Bsc type III secretion system secreted regulator [T3SS (SS038)] [Bordetella pertussis Tohama I]
4 d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]} 128 VFDB 11-126 -4.860 14  VFG000160(gi:15597593) (pvdE) pyoverdine biosynthesis protein PvdE [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
5 d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]} 123 VFDB 20-120 -5.890 VFG045565(gi:52842561) (mavF) Dot/Icm type IV secretion system effector MavF [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
6 d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]} 147 VFDB 1-133 -7.420 VFG000272(gi:15644700) (ureE) urease accessory protein (ureE) [Urease (VF0050)] [Helicobacter pylori 26695]
7 d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]} 172 VFDB 17-151 -5.890 11  VFG002055(gi:82778259) (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
8 d4hsxa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]} 137 VFDB 1-137 -5.040 VFG000985(gi:31983586) (ipaD) type III secretion system hydrophilic translocator, needle tip protein IpaD [TTSS (VF0118)] [Shigella flexneri 2a str. 301]
9 d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]} 136 VFDB 54-136 -4.850 11  VFG041281(gi:52841721) (lem9) Dot/Icm type IV secretion system effector Lem9 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
10 d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 140 VFDB 32-140 -6.080 10  VFG010471(gi:52841164) (pilO) type IV pilus inner membrane platform protein PilO [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
11 d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 149 VFDB 3-145 -6.460 VFG002080(gi:15600883) (vasC) type VI secretion system protein VasC [T6SS (VF0335)] [Vibrio cholerae O1 biovar El Tor str. N16961]
12 d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} 150 VFDB 2-138 -5.550 14  VFG000700(gi:30962648) (bsc1) bifunctional; ribulose 5-phosphate reductase; CDP-ribitol pyrophosphorylase [Capsule (VF0043)] [Haemophilus influenzae str. 1007]
13 d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]} 147 VFDB 45-147 -5.770 10  VFG045530(gi:52841882) (lpg1654) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
14 d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]} 146 VFDB 5-114 -6.160 14  VFG041308(gi:52842183) (pieD/lirF) Dot/Icm type IV secretion system effector PieD/LirF [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
15 d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]} 169 VFDB 42-169 -5.360 VFG000386(gi:16082724) (yscX) type III secretion system protein YscX [TTSS (VF0140)] [Yersinia pestis CO92]
16 d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]} 141 VFDB 2-111 -6.160 14  VFG000053(gi:33593249) (bcr4) Bordetella Bsc type III secretion system protein Bcr4 [TTSS (VF0035)] [Bordetella pertussis Tohama I]
17 d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} 146 VFDB 37-145 -5.710 VFG010471(gi:52841164) (pilO) type IV pilus inner membrane platform protein PilO [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
18 d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]} 142 VFDB 53-142 -5.230 12  VFG041281(gi:52841721) (lem9) Dot/Icm type IV secretion system effector Lem9 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
19 d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]} 140 VFDB 26-133 -5.570 12  VFG000441(gi:17233493) (spvR) Salmonella plasmid virulence: regulation of spv operon, lysR family [Spv (VF0107)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
20 d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} 146 VFDB 13-120 -4.890 VFG000441(gi:17233493) (spvR) Salmonella plasmid virulence: regulation of spv operon, lysR family [Spv (VF0107)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.