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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16763391|ref|NP_459006.1| thr operon leader peptide (STM0001) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-21) 21 COG0516 1-21 -2.870 42  [D] COG3096 Uncharacterized protein involved in chromosome partitioning
H.sapiens 1-18 -4.960 22  sp|Q9C0D2|K1731_HUMAN Leucine-rich repeat-containing protein KIAA1731 OS=Homo sapiens GN=KIAA1731 PE=2 SV=4 (Range: 1951-2250)
HGM_OVER 1-20 -1.430 15  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
JCSG0516 1-21 -4.440 33  SP2008M YP_193100.1 411825 Purified-2010-09-29
NEW_HUMAN_DOMAINS 2-18 -4.080 29  sp|Q9Y2G3|AT11B_HUMAN Probable phospholipid-transporting ATPase IF OS=Homo sapiens GN=ATP11B PE=1 SV=2 (Range: 1-65)
PDB0516 2-14 -3.030 38  2na6_A mol:protein length:28 Tumor necrosis factor receptor superfamily me
PfamA30U 1-20 -3.150 25  PF12537.6; Q0UJI5_PHANO/200-267; The Golgi pH Regulator (GPHR) Family N-terminal
SCOP206 4-17 -1.680 35  d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 1-17 -3.690 23  VFG000955(gi:19746911) (emm) M18 protein precursor [M protein (VF0242)] [Streptococcus pyogenes MGAS8232]
2 gi|16763392|ref|NP_459007.1| bifunctional aspartokinase I/homoserine dehydrogenase I (STM0002) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-820) 820 COG0516 1-483 -106.000 26  [E] COG0527 Aspartokinases
456-820 -112.000 68  [E] COG0460 Homoserine dehydrogenase
H.sapiens 119-383 -8.270 10  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 (Range: 151-450)
HGM_OVER 434-706 -3.170 PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
JCSG0516 1-477 -87.000 19  MJ8463A YP_957443.1 403171 Crystal|NMR-2009-10-31
465-815 -44.400 22  FN12420A NP_978932.1 379029 Purified-2007-08-28
NEW_HUMAN_DOMAINS 189-272 -5.610 19  sp|Q9BYP7|WNK3_HUMAN Serine/threonine-protein kinase WNK3 OS=Homo sapiens GN=WNK3 PE=1 SV=3 (Range: 1721-1800)
PDB0516 1-465 -110.000 35  3c1m_A mol:protein length:473 Probable aspartokinase
462-817 -98.300 31  1q7g_A mol:protein length:359 Homoserine dehydrogenase
PfamA30U 614-811 -29.600 28  PF00742.17; R5EAW4_9BURK/138-316; Homoserine dehydrogenase
SCOP206 3-300 -80.000 34  d3c1ma1 c.73.1.3 (A:2-303) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
315-381 -28.100 34  d3c1ma3 d.58.18.0 (A:404-470) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
382-477 -35.700 24  d3c1ma2 d.58.18.0 (A:304-403) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
462-635 -58.900 26  d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
614-798 -77.600 34  d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 196-752 -6.200 12  VFG002074(gi:15595286) (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
3 gi|16763393|ref|NP_459008.1| homoserine kinase (STM0003) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-309) 309 COG0516 2-309 -110.000 70  [E] COG0083 Homoserine kinase
H.sapiens 1-286 -21.200 15  sp|Q8N0W3|FUK_HUMAN L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2 (Range: 751-1050)
HGM_OVER 110-303 -2.840 PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]
JCSG0516 2-307 -91.600 26  TM0545 TM0545 282418 Purified-2001-12-06
NEW_HUMAN_DOMAINS 180-263 -6.220 16  tr|E9PFE0|E9PFE0_HUMAN Uncharacterized protein OS=Homo sapiens GN=CIITA PE=4 SV=1 (Range: 286-365)
PDB0516 1-309 -118.000 76  4rpf_A mol:protein length:310 Homoserine kinase
PfamA30U 83-150 -13.100 25  PF00288.24; ISPE_BACSU/86-144; GHMP kinases N terminal domain
SCOP206 2-167 -65.900 31  d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
170-308 -54.200 28  d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
VFDB 1-308 -25.400 16  VFG001953(gi:15792743) (hddA) D-glycero-D-manno-heptose 7-phosphate kinase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
4 gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-428) 428 COG0516 1-427 -104.000 29  [E] COG0498 Threonine synthase
H.sapiens 1-427 -96.700 28  sp|Q86YJ6|THNS2_HUMAN Threonine synthase-like 2 OS=Homo sapiens GN=THNSL2 PE=2 SV=3
HGM_OVER 125-329 -3.740 11  PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF
JCSG0516 63-405 -21.900 23  TM0546 TM0546 282419 Purified-2001-10-17
NEW_HUMAN_DOMAINS 127-215 -4.370 23  sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR2 PE=1 SV=3 (Range: 3741-3827)
PDB0516 1-428 -131.000 93  1vb3_A mol:protein length:428 Threonine synthase
PfamA30U 2-80 -35.800 31  PF14821.4; Q21LF7_SACD2/2-80; Threonine synthase N terminus
SCOP206 1-428 -131.000 93  d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}
VFDB 29-254 -4.510 11  VFG041341(gi:52842733) (lpg2525) Dot/Icm type IV secretion system effector [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
5 gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-257) 257 COG0516 1-257 -128.000 86  [S] COG3022 Uncharacterized protein conserved in bacteria
H.sapiens 26-237 -7.570 sp|O15033|K0317_HUMAN(removed signalp:1-31) Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3 (Range: 301-600)
HGM_OVER 10-203 -5.070 13  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
JCSG0516 23-218 -6.410 14  PS05988 NP_519234.1 376593 Purified-2007-11-08
NEW_HUMAN_DOMAINS 115-236 -6.820 21  sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2 (Range: 877-1043)
PDB0516 1-257 -125.000 86  5caj_A mol:protein length:278 UPF0246 protein YaaA
PfamA30U 1-243 -124.000 58  PF03883.12; D4ZH13_SHEVD/1-244; Peroxide stress protein YaaA
SCOP206 112-220 -7.330 18  d2ofca_ b.97.1.2 (A:) automated matches {Athelia rolfsii [TaxId: 39291]}
VFDB 110-218 -5.740 13  VFG002423(gi:151222088) (scn) complement inhibitor SCIN [SCIN (VF0425)] [Staphylococcus aureus subsp. aureus str. Newman]
6 gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476) 476 COG0516 1-471 -134.000 43  [E] COG1115 Na+/alanine symporter
H.sapiens 52-437 -10.100 12  sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2
HGM_OVER 16-344 -3.170 PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]
JCSG0516 16-428 -6.210 14  SP19117A NP_251051.1 413324 Selected-2009-11-12
NEW_HUMAN_DOMAINS 77-125 -6.840 16  sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5 (Range: 1-60)
PDB0516 52-432 -13.000 15  3gi8_C mol:protein length:444 Uncharacterized protein MJ0609
PfamA30U 47-453 -119.000 47  PF01235.15; C5DAE3_GEOSW/49-446; Sodium:alanine symporter family
SCOP206 59-427 -8.610 13  d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
VFDB 16-286 -4.540 13  VFG001850(gi:52842892) (dotA) Dot/Icm type IV secretion system protein DotA [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
7 gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-317) 317 COG0516 1-317 -152.000 87  [G] COG0176 Transaldolase
H.sapiens 1-317 -145.000 59  sp|P37837|TALDO_HUMAN Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2
HGM_OVER 89-194 -2.880 14  PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;
JCSG0516 1-317 -145.000 59  MA0295A 13435797 399843 Cloned-2009-01-23
NEW_HUMAN_DOMAINS 137-235 -7.330 sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo sapiens GN=ADNP PE=1 SV=1 (Range: 446-529)
PDB0516 1-317 -150.000 94  3cwn_A mol:protein length:337 Transaldolase B
PfamA30U 14-313 -144.000 58  PF00923.17; Q966C7_CAEEL/13-315; Transaldolase/Fructose-6-phosphate aldolase
SCOP206 2-317 -152.000 94  d3cwna_ c.1.10.1 (A:) automated matches {Escherichia coli [TaxId: 562]}
VFDB 20-251 -8.060 12  VFG043390(gi:15646189) (pdxJ) pyridoxine 5`-phosphate synthase [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
8 gi|16763398|ref|NP_459013.1| molybdenum cofactor biosynthesis protein MogA (STM0008) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-196) 196 COG0516 2-191 -101.000 74  [H] COG0521 Molybdopterin biosynthesis enzymes
H.sapiens 2-195 -78.200 32  sp|Q9NQX3|GEPH_HUMAN Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1 (Range: 1-300)
HGM_OVER 3-61 -2.490 13  PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;
JCSG0516 1-142 -13.500 23  GE7651A YP_001088583.1 396890 Crystal|NMR-2009-07-18
NEW_HUMAN_DOMAINS 79-164 -4.790 15  sp|P86479|PR20C_HUMAN Proline-rich protein 20C OS=Homo sapiens GN=PRR20C PE=4 SV=1 (Range: 134-221)
PDB0516 1-194 -102.000 90  1di6_A mol:protein length:195 MOLYBDENUM COFACTOR BIOSYNTHETIC ENZYME
PfamA30U 8-144 -17.300 21  PF00994.22; CINAL_DESPS/4-169; Probable molybdopterin binding domain
SCOP206 2-191 -101.000 92  d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
VFDB 46-146 -6.170 15  VFG002532(gi:53720917) (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
9 gi|16763399|ref|NP_459014.1| hypothetical protein (STM0009) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-188) 188 COG0516 3-184 -96.200 65  [S] COG1584 Predicted membrane protein
H.sapiens 19-184 -9.760 13  sp|Q8TF62|AT8B4_HUMAN Probable phospholipid-transporting ATPase IM OS=Homo sapiens GN=ATP8B4 PE=2 SV=3 (Range: 901-1192)
HGM_OVER 19-74 -6.550 16  PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
JCSG0516 8-130 -7.300 14  TM1341 TM1341 283203 Purified-2001-12-19
NEW_HUMAN_DOMAINS 12-63 -5.860 21  sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3 (Range: 3759-3871)
PDB0516 14-123 -6.550 10  3pjs_K mol:protein length:166 Voltage-gated potassium channel
PfamA30U 3-187 -88.900 31  PF01184.17; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family
SCOP206 2-84 -7.320 22  d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
VFDB 45-188 -5.790 13  VFG002151(gi:15605597) (copB2) Type III secretion system translocator CopB2 [TTSS (VF0344)] [Chlamydia trachomatis D/UW-3/CX]
10 gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-237) 237 COG0516 1-237 -81.000 87  [S] COG4735 Uncharacterized protein conserved in bacteria
H.sapiens 78-128 -8.000 18  sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1
HGM_OVER 15-124 -5.170 11  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
JCSG0516 3-142 -8.080 15  MG8793B YP_413069.1 391079 Purified-2008-09-03
NEW_HUMAN_DOMAINS 8-141 -5.360 sp|Q6UX73|CP089_HUMAN UPF0764 protein C16orf89 OS=Homo sapiens GN=C16orf89 PE=2 SV=2 (Range: 103-292)
PDB0516 73-128 -7.840 20  1rm1_C mol:protein length:286 Transcription initiation factor IIA large cha
PfamA30U 5-38 -9.960 32  PF13099.4; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)
SCOP206 2-93 -5.980 14  d2mhra_ a.24.4.1 (A:) Myohemerythin {Sipunculan worm (Themiste zostericola) [TaxId: 6437]}
VFDB 1-166 -5.930 13  VFG006592(gi:15645645) (fliM) flagellar motor switch protein FliM [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
11 gi|16763401|ref|NP_459016.1|(removed signalp:1-23) hypothetical protein (STM0011) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-134) 111 COG0516 30-97 -5.480 19  [R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion
H.sapiens 15-111 -7.010 13  sp|Q8IWT3|CUL9_HUMAN Cullin-9 OS=Homo sapiens GN=CUL9 PE=1 SV=2 (Range: 1201-1500)
HGM_OVER 14-111 -5.700 HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;
JCSG0516 1-111 -55.100 80  GS13914A YP_001333704.1 384834 Purified-2010-04-01
NEW_HUMAN_DOMAINS 30-110 -6.530 sp|Q6ZTI6|F101A_HUMAN Protein FAM101A OS=Homo sapiens GN=FAM101A PE=2 SV=3 (Range: 73-216)
PDB0516 36-111 -8.050 11  4za1_A mol:protein length:151 NosA
PfamA30U 1-109 -53.600 79  PF10807.6; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan)
SCOP206 30-107 -7.130 15  d1ueya1 b.1.2.1 (A:8-121) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}
VFDB 28-97 -5.220 10  VFG000951(gi:21910837) (spea) streptococcal exotoxin A precursor - phage associated [Spes (VF0248)] [Streptococcus pyogenes MGAS315]
12 gi|16763402|ref|NP_459017.1| molecular chaperone DnaK (STM0012) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-638) 638 COG0516 1-638 -193.000 56  [O] COG0443 Molecular chaperone
H.sapiens 4-505 -125.000 31  sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1
255-553 -123.000 63  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 301-600)
405-630 -88.000 48  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 451-679)
HGM_OVER 115-495 -4.420 12  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
JCSG0516 1-614 -191.000 52  TM0373 TM0373 282248 Purified-2001-03-14
NEW_HUMAN_DOMAINS 382-502 -6.810 18  sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2 (Range: 520-675)
PDB0516 1-605 -211.000 97  2kho_A mol:protein length:605 Heat shock protein 70
1-638 -117.000 25  3d2e_A mol:protein length:675 Heat shock protein homolog SSE1
PfamA30U 4-604 -202.000 62  PF00012.18; HSP7E_DROME/54-653; Hsp70 protein
SCOP206 4-180 -73.400 35  d4gnia1 c.55.1.0 (A:13-196) automated matches {Chaetomium thermophilum [TaxId: 759272]}
183-382 -63.800 45  d3i33a2 c.55.1.1 (A:190-384) automated matches {Human (Homo sapiens) [TaxId: 9606]}
389-506 -75.100 97  d4f01a1 b.130.1.1 (A:389-506) automated matches {Escherichia coli K-12 [TaxId: 83333]}
507-602 -40.200 96  d4f01a2 a.8.4.1 (A:507-602) automated matches {Escherichia coli K-12 [TaxId: 83333]}
VFDB 3-404 -9.100 14  VFG010479(gi:52841162) (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-379) 379 COG0516 1-375 -139.000 58  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
H.sapiens 1-376 -125.000 33  sp|Q96EY1|DNJA3_HUMAN(removed signalp:1-21) DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2
HGM_OVER 294-379 -5.470 16  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
JCSG0516 1-356 -128.000 40  TM0849 TM0849 282719 Selected-2001-10-12
NEW_HUMAN_DOMAINS 111-203 -6.390 20  sp|Q5T197|DCST1_HUMAN DC-STAMP domain-containing protein 1 OS=Homo sapiens GN=DCST1 PE=2 SV=1 (Range: 596-684)
PDB0516 1-363 -83.900 40  3lz8_A mol:protein length:329 Putative chaperone DnaJ
PfamA30U 5-67 -39.200 55  PF00226.29; Q22028_CAEEL/17-79; DnaJ domain
120-333 -84.700 34  PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
SCOP206 1-80 -46.100 40  d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}
2-114 -34.200 18  d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
134-212 -44.500 96  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
190-257 -13.700 27  d2q2ga1 b.4.1.0 (A:4-86) automated matches {Cryptosporidium parvum [TaxId: 353152]}
258-347 -20.500 25  d3agxa2 b.4.1.0 (A:246-340) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 4-339 -4.730 15  VFG001218(gi:15600233) (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
14 gi|16763404|ref|NP_459019.1| transcriptional regulator (STM0014) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-315) 315 COG0516 8-313 -28.300 14  [K] COG0583 Transcriptional regulator
H.sapiens 2-85 -7.520 16  sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo sapiens GN=DZIP3 PE=1 SV=2 (Range: 451-750)
HGM_OVER 16-109 -5.130 16  PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;
JCSG0516 4-315 -89.100 19  MJ15872A YP_269805.1 402763 Purified-2009-10-17
NEW_HUMAN_DOMAINS 7-85 -5.570 14  sp|Q8TC57|CB065_HUMAN Uncharacterized protein C2orf65 OS=Homo sapiens GN=C2orf65 PE=2 SV=1 (Range: 305-454)
PDB0516 3-313 -88.800 19  1utb_A mol:protein length:315 LYSR-TYPE REGULATORY PROTEIN
PfamA30U 16-70 -11.100 20  PF00126.25; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
SCOP206 6-96 -44.000 26  d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
94-313 -55.000 17  d2y7pa1 c.94.1.1 (A:90-301) automated matches {Burkholderia sp. [TaxId: 233098]}
VFDB 7-314 -40.600 11  VFG000441(gi:17233493) (spvR) Salmonella plasmid virulence: regulation of spv operon, lysR family [Spv (VF0107)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
15 gi|16763405|ref|NP_459020.1| bacteriophage protein (STM0015) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-114) 114 COG0516 18-94 -10.800 13  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
H.sapiens 17-114 -9.100 sp|Q6PRD1|GP179_HUMAN(removed signalp:1-25) Probable G-protein coupled receptor 179 OS=Homo sapiens GN=GPR179 PE=2 SV=2 (Range: 451-750)
HGM_OVER 30-108 -4.090 11  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
JCSG0516 15-94 -9.580 24  TM0020 TM0020 281901 Purified-2001-08-24
NEW_HUMAN_DOMAINS 25-112 -6.150 19  sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2 (Range: 2319-2428)
PDB0516 17-94 -9.060 16  5a40_A mol:protein length:128 PUTATIVE FLUORIDE ION TRANSPORTER CRCB
PfamA30U 5-107 -17.500 PF05106.10; A6VNP3_ACTSZ/5-105; Phage holin family (Lysis protein S)
SCOP206 81-102 -5.680 18  d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
VFDB 3-114 -5.560 13  VFG041010(gi:15595268) (tagQ) type VI secretiona ssociated protein TagQ, outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
16 gi|16763406|ref|NP_459021.1| hypothetical protein (STM0016) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-177) 177 COG0516 1-175 -72.900 25  [R] COG3926 Putative secretion activating protein
H.sapiens 1-175 -7.130 12  sp|Q8WUM4|PDC6I_HUMAN Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1 (Range: 1-300)
HGM_OVER 77-173 -5.280 17  HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;
JCSG0516 90-142 -8.430 20  CM7980A NPUN_22DEC03_CONTIG1_REVISED_GENENPR5246 368885 Crystal|NMR-2006-11-18
NEW_HUMAN_DOMAINS 43-177 -6.360 10  sp|P42695|CNDD3_HUMAN Condensin-2 complex subunit D3 OS=Homo sapiens GN=NCAPD3 PE=1 SV=2 (Range: 1-147)
PDB0516 1-175 -82.600 34  2ikb_A mol:protein length:167 Hypothetical protein NMB1012
PfamA30U 5-88 -50.100 38  PF05838.10; S5YCL9_PARAH/8-97; Glycosyl hydrolase 108
91-176 -34.000 23  PF09374.8; Q8EDS2_SHEON/119-186; Predicted Peptidoglycan domain
SCOP206 1-175 -81.700 34  d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria meningitidis [TaxId: 487]}
VFDB 3-121 -6.450 15  VFG000823(gi:15804240) (etgA) T3SS-associated peptidoglycan lytic enzyme [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
17 gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-147) 147 COG0516 2-138 -42.700 15  [K] COG3710 DNA-binding winged-HTH domains
H.sapiens 8-78 -7.990 sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 (Range: 3751-4050)
HGM_OVER 19-88 -3.840 19  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
JCSG0516 1-138 -29.300 14  TT0126A NP_418557.1 403990 Purified-2009-11-06
NEW_HUMAN_DOMAINS 1-98 -6.830 11  sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2 (Range: 151-468)
PDB0516 8-120 -22.400 15  2m1b_A mol:protein length:122 Transcriptional regulatory protein, C termina
24-105 -23.300 15  5dcl_A mol:protein length:243 PhoB family transcriptional regulator
PfamA30U 25-102 -22.900 14  PF00486.26; I0DPC2_PROSM/145-220; Transcriptional regulatory protein, C terminal
SCOP206 1-106 -23.000 15  d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
VFDB 1-133 -42.000 16  VFG002471(gi:53722574) (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
18 gi|16763408|ref|NP_459023.1| exochitinase (STM0018) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-699) 699 COG0516 1-505 -137.000 100  [G] COG3325 Chitinase
188-699 -22.300 12  [R] COG3979 Uncharacterized protein contain chitin-binding domain type 3
H.sapiens 12-473 -27.200 16  sp|Q9BWS9|CHID1_HUMAN(removed signalp:1-19) Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1
53-518 -65.300 21  sp|Q9BZP6|CHIA_HUMAN(removed signalp:1-21) Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1
429-666 -14.800 11  sp|Q12889|OVGP1_HUMAN(removed signalp:1-21) Oviduct-specific glycoprotein OS=Homo sapiens GN=OVGP1 PE=2 SV=1 (Range: 301-600)
HGM_OVER 172-276 -2.960 21  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
JCSG0516 10-588 -14.600 10  SP16664C ZP_02071203.1 409191 Selected-2009-11-12
28-485 -48.800 17  GS13820A NP_810545.1 384117 Crystal|NMR-2009-01-09
NEW_HUMAN_DOMAINS 192-273 -6.020 sp|Q6UXT9|ABH15_HUMAN Abhydrolase domain-containing protein 15 OS=Homo sapiens GN=ABHD15 PE=2 SV=2 (Range: 96-180)
PDB0516 2-509 -117.000 41  4dws_A mol:protein length:546 Chi2
28-689 -98.300 15  4txg_A mol:protein length:793 Chitinase
PfamA30U 54-465 -92.500 27  PF00704.26; Q9WFU7_9ABAC/160-544; Glycosyl hydrolases family 18
651-693 -16.600 20  PF02839.12; Q2SNL2_HAHCH/28-71; Carbohydrate binding domain
SCOP206 28-421 -79.200 24  d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]}
42-396 -81.300 24  d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]}
49-502 -79.000 23  d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]}
651-696 -16.000 20  d1goia1 b.72.2.1 (A:447-498) Chitinase B, C-terminal domain {Serratia marcescens [TaxId: 615]}
VFDB 173-598 -6.380 12  VFG000434(gi:17233482) (pefC) plasmid-encoded fimbriae usher protein PefC [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
19 gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-998) 998 COG0516 634-985 -8.250 13  [G] COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A)
H.sapiens 684-905 -7.160 13  sp|Q16832|DDR2_HUMAN(removed signalp:1-23) Discoidin domain-containing receptor 2 OS=Homo sapiens GN=DDR2 PE=1 SV=2 (Range: 601-832)
HGM_OVER 800-993 -3.800 PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF
JCSG0516 2-480 -10.500 EL17883F YP_012959.1 423525 Selected-2011-05-25
NEW_HUMAN_DOMAINS 1-459 -9.070 10  sp|A6NHR9|SMHD1_HUMAN Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Homo sapiens GN=SMCHD1 PE=1 SV=2 (Range: 471-1300)
PDB0516 633-892 -8.340 14  1tml_A mol:protein length:286 ENDO-1,4-BETA-D-GLUCANASE
PfamA30U 1-429 -8.440 10  PF05895.10; Q56S85_9CAUD/1-634; Siphovirus protein of unknown function (DUF859 topsan)
SCOP206 633-892 -8.330 13  d2bogx_ c.6.1.1 (X:) Cellulase E2 {Thermobifida fusca YX [TaxId: 269800]}
VFDB 4-527 -9.200 12  VFG001280(gi:21282246) (sdrD) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2]
20 gi|16763410|ref|NP_459025.1| cytoplasmic protein (STM0020) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-234) 234 COG0516 6-233 -14.600 [T] KOG1113 cAMP-dependent protein kinase types I and II, regulatory subunit
44-228 -27.900 13  [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
H.sapiens 5-228 -31.500 13  sp|Q8IY17|PLPL6_HUMAN Neuropathy target esterase OS=Homo sapiens GN=PNPLA6 PE=1 SV=2 (Range: 151-450)
HGM_OVER 123-223 -5.400 14  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
JCSG0516 9-228 -44.900 12  MG10881C DHAF_12NOV03_CONTIG1084_REVISED_GENE3186 390770 Crystal|NMR-2008-08-09
NEW_HUMAN_DOMAINS 191-234 -6.750 15  tr|F8W9Q8|F8W9Q8_HUMAN Uncharacterized protein OS=Homo sapiens GN=ADCK1 PE=4 SV=1 (Range: 1-128)
PDB0516 1-229 -46.700 14  3kcc_A mol:protein length:260 Catabolite gene activator
34-229 -48.700 14  2oz6_A mol:protein length:207 Virulence Factor Regulator
PfamA30U 1-159 -20.800 PF04831.11; T1HCS8_RHOPR/40-266; Popeye protein conserved region
165-232 -32.200 38  PF15977.3; A6TEJ1_KLEP7/139-207; Winged helix-turn-helix DNA binding
SCOP206 1-151 -21.700 d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}
32-163 -28.700 14  d3rypa1 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}
164-228 -17.100 20  d3rypa2 a.4.5.4 (A:138-207) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 2-225 -24.600 VFG045595(gi:52842925) (legN) Dot/Icm type IV secretion system effector LegN [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
40-228 -40.500 11  VFG000072(gi:16802246) (prfA) listeriolysin positive regulatory protein [PrfA (VF0062)] [Listeria monocytogenes EGD-e]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.